summaryrefslogtreecommitdiffstats
path: root/python/fatcat_tools
Commit message (Collapse)AuthorAgeFilesLines
* improve lookup_license_slug helper and lookup tableBryan Newbold2021-11-102-56/+62
|
* refactor importer metadata tables into separate file; move some helpers aroundBryan Newbold2021-11-1010-702/+682
| | | | | | | - MAX_ABSTRACT_LENGTH set in a single place (importer common) - merge datacite license slug table in to common table, removing some TDM-specific licenses (which do not apply in the context of preserving the full work)
* importers: refactor imports of clean() and other normalization helpersBryan Newbold2021-11-1012-95/+104
|
* remove cdl_dash_dat and wayback_static importersBryan Newbold2021-11-103-510/+0
| | | | | | | | Cleaning out dead code. These importers were used to create demonstration fileset and webcapture entities early in development. They have been replaced by the fileset and webcapture ingest importers.
* datacite import: store less subject metadataBryan Newbold2021-11-101-1/+7
| | | | | | | | Many of these 'subject' objects have the equivalent of several lines of text, with complex URLs that don't compress well. I think it is fine we have included these thus far instead of parsing more deeply, but going forward I don't think this nested 'extra' metadata is worth the database space.
* importers: use clean_doi() in many more (all?) importersBryan Newbold2021-11-096-12/+29
|
* clean_doi: stop mutating double-slash DOIs, except for 10.1037 prefixBryan Newbold2021-11-091-1/+2
|
* remove deprecated extid sqlite3 lookup table feature from importersBryan Newbold2021-11-093-160/+0
| | | | | | | | This was used during initial bulk imports, but is no longer used and could create serious metadata problems if used accidentially. In retrospect, it also made metadata provenance less transparent, and may have done more harm than good overall.
* cleanups: create a separate JsonLinePusher for cleanup workers (distinct ↵Bryan Newbold2021-11-032-2/+19
| | | | base class)
* datacite importer: remove unused 'year_only' variableBryan Newbold2021-11-031-2/+3
|
* pubmed harvester: remove unused variablesBryan Newbold2021-11-031-2/+2
|
* pubmed harvester: explicit assertions to mark unreachable code pathsBryan Newbold2021-11-031-0/+2
|
* typing: add assertions to fatcat_tool code to make type assumptions explicitBryan Newbold2021-11-033-0/+3
|
* typing: add annotations to remaining fatcat_tools codeBryan Newbold2021-11-039-122/+186
| | | | | Again, these are just annotations, no changes made to get type checks to pass
* datacite: add comment about potential date parsing bugBryan Newbold2021-11-031-0/+1
|
* datacite importer: dateparser.date.DateDataParser()Bryan Newbold2021-11-031-1/+1
| | | | Perhaps this was a change when upgrading 'dateparser'?
* more involved type wrangling and fixes for importersBryan Newbold2021-11-033-12/+14
|
* typing: relatively simple type check fixesBryan Newbold2021-11-0314-87/+82
| | | | | | | These mostly add new variable names so that existing variables aren't overwritten with a new type; delay coercing '{}' or '[]' to 'None' until the last minute; adding is-not-None checks to conditional clauses; and similar small changes.
* typing: initial annotations on importersBryan Newbold2021-11-0322-274/+443
| | | | | This commit just adds the type annotations, doesn't do fixes to code to make type checking pass.
* typing: first batch of python bulk type annotationsBryan Newbold2021-11-039-69/+129
| | | | | | While these changes are more delicate than simple lint changes, this specific batch of edits and annotations was *relatively* simple, and resulted in few code changes other than function signature additions.
* importers: remove unused __main__ routineBryan Newbold2021-11-034-19/+0
| | | | | | These perhaps were used in initial develoment or testing? fatcat_import.py is the correct way to do these imports, even for testing/development.
* lint: resolve existing mypy type errorsBryan Newbold2021-11-028-50/+86
| | | | | | | | | Adds annotations and re-workes dataflow to satisfy existing mypy issues, without adding any additional type annotations to, eg, function signatures. There will probably be many more type errors when annotations are all added.
* re-fix some lint issues after big 'fmt'Bryan Newbold2021-11-022-4/+5
|
* fmt (black): fatcat_tools/Bryan Newbold2021-11-0243-3194/+4020
|
* python: isort everythingBryan Newbold2021-11-0232-71/+116
|
* arabesque import 'hit' field is 1/0, not true/falseBryan Newbold2021-11-021-2/+2
|
* lint: simple, safe inline lint fixesBryan Newbold2021-11-0218-83/+82
| | | | '==' vs 'is'; 'not a in b' vs 'a not in b'; etc
* lint/fmt: remove all 'import *'Bryan Newbold2021-11-025-21/+41
|
* entity transforms: add basic type annotationsBryan Newbold2021-11-021-7/+19
|
* ftfy 'fix_entities' argument has been renamedBryan Newbold2021-11-021-4/+4
|
* hacks to work around new pylint false positivesBryan Newbold2021-11-021-2/+3
|
* cleanup imports after fatcat_tools.transforms changeBryan Newbold2021-11-021-5/+8
|
* re-fmt all the fatcat_tools __init__ files for readabilityBryan Newbold2021-11-025-30/+62
|
* remove 'import *' from fatcat_tools (for transforms)Bryan Newbold2021-11-021-2/+2
|
* small python tweaks for annotations, importsBryan Newbold2021-11-023-3/+7
|
* try some type annotationsBryan Newbold2021-11-024-70/+79
|
* reviewer: add annotations required by mypyBryan Newbold2021-11-021-2/+3
|
* fix missing variable in fileset ingestBryan Newbold2021-11-021-2/+1
|
* Merge branch 'bnewbold-import-fileset'Bryan Newbold2021-11-025-4/+350
|\
| * WIP: more fileset ingestBryan Newbold2021-10-181-13/+21
| |
| * WIP: rel fixesBryan Newbold2021-10-141-6/+6
| |
| * fileset ingest small tweaksBryan Newbold2021-10-141-21/+36
| |
| * initial implementation of fileset ingest importersBryan Newbold2021-10-142-3/+224
| |
| * ingest: handle datasets, components, other ingest typesBryan Newbold2021-10-141-1/+15
| |
| * generic fileset importer class, with test coverageBryan Newbold2021-10-143-0/+88
| |
* | Merge branch 'bnewbold-match-get'Bryan Newbold2021-11-021-3/+9
|\ \
| * | access: populate thumbnail_url for PDFsBryan Newbold2021-10-181-3/+9
| |/
* / pubmed: switch default http site to retrieve update filesMartin Czygan2021-10-151-2/+4
|/ | | | | | | Proxy started to throw: "dial tcp: lookup ftp.ncbi.nlm.nih.gov on [::1]:53: read udp [::1]:45178->[::1]:53: read: connection refused" NIH has a http version on it's own, try to use that.
* dblp import: basic support for handles as identifiersBryan Newbold2021-10-131-1/+5
|
* python: normalization/validation support for handle identifiers (hdl)Bryan Newbold2021-10-131-0/+33
|
generated by cgit v1.2.3 (git 2.39.1) at 2024-12-13 21:02:03 +0000