Commit message (Collapse) | Author | Age | Files | Lines | |
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* | initial implementation of dblp release importer (in progress) | Bryan Newbold | 2020-12-17 | 2 | -0/+445 |
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* | add 'lxml' mode for large XML file import, and multi-tags | Bryan Newbold | 2020-12-17 | 1 | -15/+28 |
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* | add dblp as an ingest source and identifier | Bryan Newbold | 2020-12-17 | 1 | -1/+2 |
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* | ingest: allow doaj ingest responses | Bryan Newbold | 2020-12-17 | 1 | -1/+2 |
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* | update fuzzy helper to pass 'reason' through to import code | Bryan Newbold | 2020-12-17 | 1 | -3/+3 |
| | | | | | The motivation for this change is to enable passing the 'reason' through to edit extra metadata, in cases where we merge or cluster releases. | ||||
* | add fuzzy match filtering to DOAJ importer | Bryan Newbold | 2020-12-16 | 1 | -2/+9 |
| | | | | | | | | | | | In this default configuration, any entities with a fuzzy match (even "ambiguous") will be skipped at import time, to prevent creating duplicates. This is conservative towards not creating new/duplicate entities. In the future, as we get more confidence in fuzzy match/verification, we can start to ignore AMBIGUOUS, handle EXACT as same release, and merge STRONG (and WEAK?) matches under the same work entity. | ||||
* | add fuzzy matching helper to importer base class | Bryan Newbold | 2020-12-16 | 1 | -2/+62 |
| | | | | Using fuzzycat. Add basic test coverage. | ||||
* | html ingest: small fixes to try_update() code path | Bryan Newbold | 2020-12-15 | 1 | -5/+5 |
| | | | | | Don't currently have test coverage for most try_update() code; run the inserts manually in testing. | ||||
* | crossref+datacite: remove confusing early update bail | Bryan Newbold | 2020-11-20 | 2 | -4/+0 |
| | | | | | Easy to miss that we skip updates *twice*, and with this early bailout were not updating counts correctly. | ||||
* | doaj: fix update code path (getattr not __dict__) | Bryan Newbold | 2020-11-20 | 1 | -4/+3 |
| | | | | Also add missing code coverage for update path (disabled by default). | ||||
* | DOAJ: handle empty identifier 'id' case | Bryan Newbold | 2020-11-20 | 1 | -0/+2 |
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* | tweak DOAJ importer class args and default for do_updates | Bryan Newbold | 2020-11-19 | 1 | -2/+2 |
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* | implement remainder of DOAJ article importer | Bryan Newbold | 2020-11-19 | 1 | -57/+125 |
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* | more python normalizers, and move from importer common | Bryan Newbold | 2020-11-19 | 1 | -154/+4 |
| | | | | | | | | | | | | Moved several normalizer helpers out of fatcat_tools.importers.common to fatcat_tools.normal. Copied language name and country name parser helpers from chocula repository (built on existing pycountry helper library). Have not gone through and refactored other importers to point to these helpers yet; that should be a separate PR when this branch is merged. Current changes are backwards compatible via re-imports. | ||||
* | initial implementation of DOAJ importer | Bryan Newbold | 2020-11-19 | 2 | -0/+290 |
| | | | | Several things to finish implementing and polish. | ||||
* | html ingest: actual xhtml mimetype | Bryan Newbold | 2020-11-16 | 1 | -2/+2 |
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* | html ingest: remaining implementation | Bryan Newbold | 2020-11-06 | 1 | -22/+19 |
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* | ingest: progress on HTML ingest | Bryan Newbold | 2020-11-05 | 1 | -14/+30 |
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* | ingest: initial 'web' worker implementation | Bryan Newbold | 2020-11-05 | 2 | -67/+259 |
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* | refactor: white/black -> allow/block | Bryan Newbold | 2020-11-05 | 1 | -4/+4 |
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* | ingest: whitelist -> allowlist | Bryan Newbold | 2020-11-05 | 1 | -3/+3 |
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* | ingest: basic checks for ingest_type | Bryan Newbold | 2020-11-05 | 1 | -3/+29 |
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* | chocula importer: small tweaks to update behavior | Bryan Newbold | 2020-10-08 | 1 | -8/+6 |
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* | address spammy datacite titles | Martin Czygan | 2020-09-23 | 1 | -0/+19 |
| | | | | | | | | | seemingly from zenodo: * https://fatcat.wiki/release/rzcpjwukobd4pj36ipla22cnoi * https://doi.org/10.5281/zenodo.4041777 About 3400 records with "FULL MOVIE" in title, currently. | ||||
* | datacite: handle case of empty-string version | Bryan Newbold | 2020-09-10 | 1 | -1/+1 |
| | | | | | Includes a tiny tweak to the datacite import sample file to test this code path. | ||||
* | remove spurious print statement | Bryan Newbold | 2020-09-03 | 1 | -1/+0 |
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* | generic file entity clean-ups as part of file_meta importer | Bryan Newbold | 2020-09-02 | 2 | -0/+50 |
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* | fix comment typo (thanks martin) | Bryan Newbold | 2020-08-27 | 1 | -1/+1 |
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* | fixes and test coverage for file_meta importer | Bryan Newbold | 2020-08-21 | 1 | -5/+10 |
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* | initial implementation of file_meta importer | Bryan Newbold | 2020-08-21 | 2 | -0/+71 |
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* | datacite import: figshare-specific hacks | Bryan Newbold | 2020-08-11 | 1 | -3/+3 |
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* | datacite import: refactor release_type detection into static method | Bryan Newbold | 2020-08-11 | 1 | -14/+51 |
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* | datacite import: refactor publisher-specific hacks into static method | Bryan Newbold | 2020-08-11 | 1 | -15/+29 |
| | | | | Also tweak title/publisher detection to use DOI prefixes | ||||
* | chocula import update tweaks | Bryan Newbold | 2020-08-04 | 1 | -10/+14 |
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* | more update keys and cases for chocula importer | Bryan Newbold | 2020-08-04 | 1 | -5/+11 |
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* | fix key name mismatch in chocula importer | Bryan Newbold | 2020-08-04 | 1 | -1/+1 |
| | | | | chocula 'export-fatcat' uses 'ident', not 'fatcat_ident' | ||||
* | fix issnl typo in pubmed | Bryan Newbold | 2020-07-23 | 1 | -1/+1 |
| | | | | | | | | | | Oh no! This bug may actually have had significant negative impact on metadata in fatcat, in terms of missing container_id associations with pubmed entities. There are about 500k release entities with a PMID but no container_id. Of those, 89k have at least a container_name. Unclear how many would have matched to ISSN-L and thus to a container. | ||||
* | remove isascii() work around definition in importers/datacite.py | Bryan Newbold | 2020-07-23 | 1 | -7/+1 |
| | | | | We are python3.7 now, so this isn't needed. | ||||
* | simple lint (flake8) fixes over python codebase | Bryan Newbold | 2020-07-23 | 5 | -17/+16 |
| | | | | | | These should not have any behavior changes, though a number of exception catches are now more general, and there may be long-tail exceptions getting thrown in these statements. | ||||
* | Merge branch 'martin-datacite-duplicated-author-gh-59' into 'master' | bnewbold | 2020-07-11 | 1 | -6/+60 |
|\ | | | | | | | | | datacite: address duplicated contributor issue See merge request webgroup/fatcat!65 | ||||
| * | datacite: resolve formatting issues in tests | Martin Czygan | 2020-07-10 | 16 | -72/+28 |
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| * | | datacite: there should be no index gaps | Martin Czygan | 2020-07-10 | 1 | -2/+8 |
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| * | | datacite: document contributor types | Martin Czygan | 2020-07-10 | 1 | -0/+25 |
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| * | | wip: contrib, GH59 | Martin Czygan | 2020-07-10 | 1 | -16/+22 |
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| * | | datacite: address duplicated contributor issue | Martin Czygan | 2020-07-07 | 1 | -0/+16 |
| | | | | | | | | | | | | | | | | | | | | | Use string comparison. * https://fatcat.wiki/release/spjysmrnsrgyzgq6ise5o44rlu/contribs * https://api.datacite.org/dois/10.25940/roper-31098406 | ||||
* | | | datacite: mitigate sentry #44035 | Martin Czygan | 2020-07-10 | 1 | -0/+4 |
| |/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | According to sentry, running `c.get('nameIdentifiers', []) or []` on a c with value: ``` {'affiliation': [], 'familyName': 'Guidon', 'givenName': 'Manuel', 'nameIdentifiers': {'nameIdentifier': 'https://orcid.org/0000-0003-3543-6683', 'nameIdentifierScheme': 'ORCID', 'schemeUri': 'https://orcid.org'}, 'nameType': 'Personal'} ``` results in a string, which I cannot reproduce. The document in question at: https://api.datacite.org/dois/10.26275/kuw1-fdls seems fine, too. | ||||
* | | datacite: fix attribute error | Martin Czygan | 2020-07-07 | 1 | -1/+1 |
| | | | | | | | | refs: #44035 | ||||
* | | lint (flake8) tool python files | Bryan Newbold | 2020-07-01 | 16 | -72/+27 |
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* | add new license mappings | Bryan Newbold | 2020-06-30 | 2 | -0/+27 |
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* | datacite: improve license mapping | Martin Czygan | 2020-06-30 | 1 | -9/+15 |
| | | | | via "missed potential license", refs #58 |