fatcat - [no description]

	Commit message (Collapse)	Author	Age	Files	Lines
*	lint (flake8) tool python files	Bryan Newbold	2020-07-01	1	-4/+2
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*	importers: clarify handling of ApiException	Bryan Newbold	2020-05-22	1	-0/+1
\| \| \| \| \| \| \| \|	One of these (in ingest importer pipeline) is an actual bug, the others are just changing the syntax to be more explicit/conservative. The ingest importer bug seems to have resulted in some bad file match imports; scale of impact is unknown.
*	pubmed: use untranslated title if translated not available	Bryan Newbold	2020-04-01	1	-0/+6
\| \| \| \| \| \| \|	The primary motivation for this change is that fatcat requires a non-empty title for each release entity. Pubmed/Medline occasionally indexes just a VenacularTitle with no ArticleTitle for foreign publications, and currently those records don't end up in fatcat at all.
*	importers: replace newlines in get_text() strings	Bryan Newbold	2020-04-01	1	-5/+7
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*	pubmed: bunch of .get_text() instead of .string	Bryan Newbold	2020-03-28	1	-12/+12
\| \| \| \| \| \| \| \| \| \| \|	Yikes! Apparently when a tag has child tags, .string will return None instead of all the strings. .get_text() returns all of it: https://www.crummy.com/software/BeautifulSoup/bs4/doc/#get-text https://www.crummy.com/software/BeautifulSoup/bs4/doc/#string I've things like identifiers as .string, when we expect only a single string inside.
*	pubmed: handle multiple ReferenceList	Bryan Newbold	2020-03-20	1	-1/+4
\| \| \| \| \| \| \|	This resolves a situation noticed in prod where we were only importing/updating a single reference per article. Includes a regression test.
*	pubmed: update many more metadata fields	Bryan Newbold	2020-03-19	1	-0/+22
\| \| \| \| \| \| \|	In particular, with daily updates in most cases the DOI will be registered first, then the entity updated with PMID when that is available. Often the pubmed metadata will be more complete, with abstracts etc, and we'll want those improvements.
*	importers: control update behavior with more-standard flag	Bryan Newbold	2020-01-06	1	-0/+4
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*	pubmed: if doing update, also do subtitle schema update	Bryan Newbold	2019-12-23	1	-1/+9
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*	pubmed: improve warning and stderr formatting	Bryan Newbold	2019-12-23	1	-5/+6
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*	pubmed: use standard identifier cleaners	Bryan Newbold	2019-12-23	1	-17/+14
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*	pubmed: remove unused extid mapping code	Bryan Newbold	2019-12-23	1	-29/+0
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*	pubmed: do reference lookups by default	Bryan Newbold	2019-12-23	1	-1/+1
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*	pubmed: null doi parsing check	Bryan Newbold	2019-12-23	1	-1/+1
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*	add basic MedlineDate year parsing	Bryan Newbold	2019-12-23	1	-0/+11
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*	refactor all python source for client lib name	Bryan Newbold	2019-09-05	1	-16/+16
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*	more pubmed importer fixes	Bryan Newbold	2019-06-03	1	-6/+13
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*	yet another pubmed weird DOI corner case	Bryan Newbold	2019-05-29	1	-1/+1
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*	handle pubmed CollectiveName null-ness	Bryan Newbold	2019-05-29	1	-1/+1
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*	handle empty retraction_of.PMID in pubmed importer	Bryan Newbold	2019-05-29	1	-2/+4
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*	more MARC languages, and less verbose reporting	Bryan Newbold	2019-05-24	1	-1/+1
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*	pubmed DOIs need strip()	Bryan Newbold	2019-05-22	1	-1/+1
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*	pubmed: try to work around multi-edits	Bryan Newbold	2019-05-22	1	-3/+13
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*	more strict pubmed DOI handling	Bryan Newbold	2019-05-22	1	-1/+3
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*	more pubmed checks; handle PMID/DOI mismatch differently	Bryan Newbold	2019-05-22	1	-2/+7
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*	all new importers need to set contrib index (order)	Bryan Newbold	2019-05-22	1	-0/+4
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*	pubmed importer command and tweaks	Bryan Newbold	2019-05-22	1	-9/+227
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*	importers: create containers by default	Bryan Newbold	2019-05-21	1	-1/+2
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*	updates to pubmed importer	Bryan Newbold	2019-05-21	1	-32/+60
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*	fix lint issue in pubmed importer	Bryan Newbold	2019-05-21	1	-1/+1
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*	tweaks to new imports/tests	Bryan Newbold	2019-05-21	1	-6/+4
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*	initial pubmed importer	Bryan Newbold	2019-05-21	1	-0/+512