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:
fatcat
bnewbold-doaj-article-harvest
bnewbold-elastic-extras
bnewbold-openapi-client-generator-v601
bnewbold-pythonclient-types
bnewbold-redoc
bnewbold-rust-gen-v5
bnewbold-sitemap
bnewbold-ubuntu-jammy
cockroach
confluent-kafka
master
preview
x-attic-auth-other-macaroon-lib
x-attic-camp
x-attic-changelog-export
x-attic-chocula
x-attic-cockroach
x-attic-golang
x-attic-more-importers
x-attic-preview
x-attic-python-rust-hacks
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path:
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/
python
/
fatcat_tools
/
importers
/
pubmed.py
Commit message (
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)
Author
Age
Files
Lines
*
refactor importer metadata tables into separate file; move some helpers around
Bryan Newbold
2021-11-10
1
-314
/
+5
*
importers: refactor imports of clean() and other normalization helpers
Bryan Newbold
2021-11-10
1
-4
/
+11
*
typing: relatively simple type check fixes
Bryan Newbold
2021-11-03
1
-17
/
+7
*
typing: initial annotations on importers
Bryan Newbold
2021-11-03
1
-10
/
+17
*
importers: remove unused __main__ routine
Bryan Newbold
2021-11-03
1
-5
/
+0
*
fmt (black): fatcat_tools/
Bryan Newbold
2021-11-02
1
-158
/
+197
*
lint: simple, safe inline lint fixes
Bryan Newbold
2021-11-02
1
-1
/
+1
*
lint/fmt: remove all 'import *'
Bryan Newbold
2021-11-02
1
-5
/
+7
*
python: partial importer utilization of new schema changes
Bryan Newbold
2021-10-13
1
-3
/
+9
*
fix issnl typo in pubmed
Bryan Newbold
2020-07-23
1
-1
/
+1
*
lint (flake8) tool python files
Bryan Newbold
2020-07-01
1
-4
/
+2
*
importers: clarify handling of ApiException
Bryan Newbold
2020-05-22
1
-0
/
+1
*
pubmed: use untranslated title if translated not available
Bryan Newbold
2020-04-01
1
-0
/
+6
*
importers: replace newlines in get_text() strings
Bryan Newbold
2020-04-01
1
-5
/
+7
*
pubmed: bunch of .get_text() instead of .string
Bryan Newbold
2020-03-28
1
-12
/
+12
*
pubmed: handle multiple ReferenceList
Bryan Newbold
2020-03-20
1
-1
/
+4
*
pubmed: update many more metadata fields
Bryan Newbold
2020-03-19
1
-0
/
+22
*
importers: control update behavior with more-standard flag
Bryan Newbold
2020-01-06
1
-0
/
+4
*
pubmed: if doing update, also do subtitle schema update
Bryan Newbold
2019-12-23
1
-1
/
+9
*
pubmed: improve warning and stderr formatting
Bryan Newbold
2019-12-23
1
-5
/
+6
*
pubmed: use standard identifier cleaners
Bryan Newbold
2019-12-23
1
-17
/
+14
*
pubmed: remove unused extid mapping code
Bryan Newbold
2019-12-23
1
-29
/
+0
*
pubmed: do reference lookups by default
Bryan Newbold
2019-12-23
1
-1
/
+1
*
pubmed: null doi parsing check
Bryan Newbold
2019-12-23
1
-1
/
+1
*
add basic MedlineDate year parsing
Bryan Newbold
2019-12-23
1
-0
/
+11
*
refactor all python source for client lib name
Bryan Newbold
2019-09-05
1
-16
/
+16
*
more pubmed importer fixes
Bryan Newbold
2019-06-03
1
-6
/
+13
*
yet another pubmed weird DOI corner case
Bryan Newbold
2019-05-29
1
-1
/
+1
*
handle pubmed CollectiveName null-ness
Bryan Newbold
2019-05-29
1
-1
/
+1
*
handle empty retraction_of.PMID in pubmed importer
Bryan Newbold
2019-05-29
1
-2
/
+4
*
more MARC languages, and less verbose reporting
Bryan Newbold
2019-05-24
1
-1
/
+1
*
pubmed DOIs need strip()
Bryan Newbold
2019-05-22
1
-1
/
+1
*
pubmed: try to work around multi-edits
Bryan Newbold
2019-05-22
1
-3
/
+13
*
more strict pubmed DOI handling
Bryan Newbold
2019-05-22
1
-1
/
+3
*
more pubmed checks; handle PMID/DOI mismatch differently
Bryan Newbold
2019-05-22
1
-2
/
+7
*
all new importers need to set contrib index (order)
Bryan Newbold
2019-05-22
1
-0
/
+4
*
pubmed importer command and tweaks
Bryan Newbold
2019-05-22
1
-9
/
+227
*
importers: create containers by default
Bryan Newbold
2019-05-21
1
-1
/
+2
*
updates to pubmed importer
Bryan Newbold
2019-05-21
1
-32
/
+60
*
fix lint issue in pubmed importer
Bryan Newbold
2019-05-21
1
-1
/
+1
*
tweaks to new imports/tests
Bryan Newbold
2019-05-21
1
-6
/
+4
*
initial pubmed importer
Bryan Newbold
2019-05-21
1
-0
/
+512