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* datacite: skip non-ascii doi for nowMartin Czygan2019-12-311-0/+4
| | | | | | Example of a non-ascii doi: * https://doi.org/10.13125/américacrítica/3017
* datacite: clean doiMartin Czygan2019-12-311-1/+13
| | | | | | | address issue with EN DASH DOI. > "external identifier doesn't match required pattern for a DOI (expected, eg, '10.1234/aksjdfh'): 10.25513/1812-3996.2017.1.34–42"
* datacite: update docsMartin Czygan2019-12-311-9/+9
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* datacite: perform additional checks on contribMartin Czygan2019-12-301-3/+9
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* datacite: check for empty title after cleanMartin Czygan2019-12-291-2/+5
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* datacite: update docs with observed valuesMartin Czygan2019-12-291-1/+3
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* datacite: page number misses are too commonMartin Czygan2019-12-281-1/+2
| | | | | | Should be a level debug, not info. Examples: E675, n/a, 15D.2.1, 15D.2.1, A.1E.1, A.1E.1, ...
* datacite: suppress debug-like language lookup miss messageMartin Czygan2019-12-281-1/+3
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* datacite: treat untyped names as peopleMartin Czygan2019-12-281-1/+1
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* datacite: include container_name top level key in extraMartin Czygan2019-12-281-7/+21
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* datacite: use clean on field valuesMartin Czygan2019-12-281-2/+28
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* datacite: include doi in error messagesMartin Czygan2019-12-281-8/+8
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* datacite: limit abstract lengthMartin Czygan2019-12-281-0/+6
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* datacite: use iso 639-1 codesMartin Czygan2019-12-281-7/+4
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* address first round of MR14 commentsMartin Czygan2019-12-281-148/+319
| | | | | | | | | | | | | * add missing langdetect * use entity_to_dict for json debug output * factor out code for fields in function and add table driven tests * update citeproc types * add author as default role * add raw_affiliation * include relations from datacite * remove url (covered by doi already) Using yapf for python formatting.
* datacite: move common date patterns out of the loopMartin Czygan2019-12-281-3/+4
| | | | Additionally, try the unspecific (%Y) pattern last.
* improve datacite field mapping and importMartin Czygan2019-12-281-41/+139
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Current version succeeded to import a random sample of 100000 records (0.5%) from datacite. The --debug (write JSON to stdout) and --insert-log-file (log batch before committing to db) flags are temporary added to help debugging. Add few unit tests. Some edge cases: a) Existing keys without value requires a slightly awkward: ``` titles = attributes.get('titles', []) or [] ``` b) There can be 0, 1, or more (first one wins) titles. c) Date handling is probably not ideal. Datacite has a potentiall fine grained list of dates. The test case (tests/files/datacite_sample.jsonl) refers to https://ssl.fao.org/glis/doi/10.18730/8DYM9, which has date (main descriptor) 1986. The datacite record contains: 2017 (publicationYear, probably the year of record creation with reference system), 1978-06-03 (collected, e.g. experimental sample), 1986 ("Accepted"). The online version of the resource knows even one more date (2019-06-05 10:14:43 by WIEWS update).
* datacite: add missing mappings and notesMartin Czygan2019-12-281-266/+175
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* datacite: basic field mappingsMartin Czygan2019-12-281-41/+181
| | | | | | | | | | Currently using two external libraries: * dateparser * langcodes Note: This commit includes lots of wip docs and field stat in comment, which should be removed.
* datacite: importer skeletonMartin Czygan2019-12-281-0/+458
* contributors, title, date, publisher, container, license Field and value analysis via https://github.com/miku/indigo.
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