| Commit message (Collapse) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | pubmed ftp: fix url | Martin Czygan | 2020-02-19 | 1 | -4/+6 |
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| * | pubmed ftp harvest and KafkaBs4XmlPusher | Martin Czygan | 2020-02-19 | 2 | -0/+214 |
| | | | | | | | | * add PubmedFTPWorker * utils are currently stored alongside pubmed (e.g. ftpretr, xmlstream) but may live elsewhere, as they are more generic * add KafkaBs4XmlPusher | ||||
| * | harvest: log state on startup and use stderr for diagnostics | Martin Czygan | 2020-02-14 | 3 | -17/+22 |
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| * | datacite: extend range search query | Martin Czygan | 2019-12-27 | 1 | -1/+1 |
| | | | | | | The bracket syntax is inclusive. See also: https://www.elastic.co/guide/en/elasticsearch/reference/7.5/query-dsl-query-string-query.html#_ranges | ||||
| * | avoid usage of short links | Martin Czygan | 2019-12-27 | 1 | -2/+2 |
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| * | Datacite API v2 throws 400, we cannot recover from, currently. | Martin Czygan | 2019-12-27 | 1 | -0/+4 |
| | | | | | | | | | | | As a first iteration, just mark the daily batch complete and continue. The occasional HTTP 400 issue has been reported as https://github.com/datacite/datacite/issues/897. A possible improvement would be to shrink the window, so losses will be smaller. | ||||
| * | datacite: update documentation, add links to issues | Martin Czygan | 2019-12-27 | 1 | -10/+5 |
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| * | datacite: use v2 of the API (flaky) | Martin Czygan | 2019-12-27 | 1 | -5/+28 |
| | | | | | | | | | | Update parameter update for datacite API v2. Works fine, but there are occasional HTTP 400 responses when using the cursor API (daily updates can exceed the 10000 record limit for search queries). The HTTP 400 issue is not solved yet, but reported to datacite as https://github.com/datacite/datacite/issues/897. | ||||
| * | refactor kafka producer in crossref harvester | Bryan Newbold | 2019-12-06 | 1 | -21/+26 |
| | | | | | | | | | producer creation/configuration should be happening in __init__() time, not 'daily' call. This specific refactor motivated by mocking out the producer in unit tests. | ||||
| * | crossref is_update isn't what I thought | Bryan Newbold | 2019-12-03 | 1 | -6/+2 |
| | | | | | | | | | I thought this would filter for metadata updates to an existing DOI, but actually "updates" are a type of DOI (eg, a retraction). TODO: handle 'updates' field. Should both do a lookup and set work_ident appropriately, and store in crossref-specific metadata. | ||||
| * | review/fix all confluent-kafka produce code | Bryan Newbold | 2019-09-20 | 3 | -14/+49 |
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| * | small fixes to confluent-kafka importers/workers | Bryan Newbold | 2019-09-20 | 2 | -2/+2 |
| | | | | | | | | | - decrease default changelog pipeline to 5.0sec - fix missing KafkaException harvester imports - more confluent-kafka tweaks - updates to kafka consumer configs - bump elastic updates consumergroup (again) | ||||
| * | small kafka tweaks for robustness | Bryan Newbold | 2019-09-20 | 1 | -0/+2 |
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| * | bump max message size to ~20 MBytes | Bryan Newbold | 2019-09-20 | 2 | -0/+2 |
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| * | fixes to confluent-kafka harvesters | Bryan Newbold | 2019-09-20 | 3 | -20/+21 |
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| * | first draft harvesters using confluent-kafka | Bryan Newbold | 2019-09-20 | 3 | -48/+104 |
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| * | increase default harvest window to 14 days | Bryan Newbold | 2019-04-01 | 1 | -2/+2 |
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| * | HACK: force pylint to ignore urllib3 Retry import | Bryan Newbold | 2019-03-15 | 1 | -1/+3 |
| | | | | | | | As the code comment mentions, not sure why pylint throws this error. requests and urllib3 are recent, and this code runs fine in tests and QA, and pylint is running (in CI) within pipenv. | ||||
| * | MEDLINE/Pubmed note | Bryan Newbold | 2019-03-15 | 1 | -2/+6 |
| | | | | | Also, arXivRaw, not arXiv (though see WIP on more-importers branch) | ||||
| * | fix harvester session.get() params | Bryan Newbold | 2019-03-06 | 1 | -5/+8 |
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| * | retry/backoff for Crossref harvester | Bryan Newbold | 2019-03-06 | 2 | -2/+24 |
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| * | bunch of lint/whitespace cleanups | Bryan Newbold | 2019-02-22 | 3 | -9/+6 |
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| * | check request status codes idiomatically | Bryan Newbold | 2018-12-29 | 1 | -2/+2 |
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| * | clean up harvester comments/docs | Bryan Newbold | 2018-11-21 | 3 | -50/+31 |
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| * | use isoformat() to format dates | Bryan Newbold | 2018-11-21 | 2 | -4/+4 |
| | | | | | This shouldn't change behavior; it's just more consistent. | ||||
| * | fix loop_sleep typo | Bryan Newbold | 2018-11-21 | 2 | -2/+2 |
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| * | fix datacite DOI extraction | Bryan Newbold | 2018-11-21 | 1 | -1/+1 |
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| * | fix OAI-PMH name/finished message | Bryan Newbold | 2018-11-21 | 1 | -1/+6 |
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| * | fix oai-pmh issue again | Bryan Newbold | 2018-11-21 | 1 | -13/+14 |
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| * | oaipmh: handle NoRecordsMatch | Bryan Newbold | 2018-11-21 | 1 | -5/+8 |
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| * | initial OAI-PMH harvesters | Bryan Newbold | 2018-11-19 | 3 | -5/+167 |
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| * | better DOI registrar harvesters | Bryan Newbold | 2018-11-19 | 3 | -48/+145 |
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| * | bunch of pylint cleanup | Bryan Newbold | 2018-11-15 | 1 | -7/+12 |
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| * | refactoring harvesters | Bryan Newbold | 2018-11-15 | 5 | -196/+210 |
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| * | initial work on metadata harvest bots | Bryan Newbold | 2018-11-14 | 4 | -0/+197 |
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