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first seen in CI (jobs/230137), slightly related:
https://github.com/pytest-dev/pytest/issues/3953
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via: $ pipenv lock
CI complained with a slightly cryptic:
> TypeError: __init__() missing 1 required positional argument: 'self'
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* add missing langdetect
* use entity_to_dict for json debug output
* factor out code for fields in function and add table driven tests
* update citeproc types
* add author as default role
* add raw_affiliation
* include relations from datacite
* remove url (covered by doi already)
Using yapf for python formatting.
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loginpass patches got accepted upstream a while back, so don't need to
pin to a git version
ipython 7.10 seems to have problems installing, so restricting to
earlier 6.x versions
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This prevents a test exception that presents like:
tests/transform_csl.py:46:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
fatcat_tools/transforms/csl.py:204: in citeproc_csl
style_path = get_style_filepath(style)
.venv/lib/python3.5/site-packages/citeproc_styles/__init__.py:74: in get_style_filepath
if resource_exists(__name__, independent_style):
.venv/lib/python3.5/site-packages/pkg_resources/__init__.py:1134: in resource_exists
return get_provider(package_or_requirement).has_resource(resource_name)
.venv/lib/python3.5/site-packages/pkg_resources/__init__.py:1404: in has_resource
return self._has(self._fn(self.module_path, resource_name))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <pkg_resources.NullProvider object at 0x7f4f38c0bb00>
path = '/home/bnewbold/code/fatcat/python/.venv/lib/python3.5/site-packages/citeproc_styles/styles/bibtex.csl'
def _has(self, path):
raise NotImplementedError(
> "Can't perform this operation for unregistered loader type"
)
E NotImplementedError: Can't perform this operation for unregistered loader type
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This is still manually tweaked. I believe i've bifurcated the source of
the CSL/citeproc_style import error to upgrade of the 'pytest' module.
This commit upgrades all packages except pytest.
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These are low-level and high-level (respectively)
client wrappers for elasticsearch
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When pipenv upgraded all dependencies after installing pygal, tests
failed due to errors like:
NotImplementedError: Can't perform this operation for unregistered loader type
coming from citeproc style code, via `pkg_resource`. Still not sure what
the root cause is, as that package itself wasn't upgraded. I tried a bit
of bisecting dependency upgrades but nothing obvious was the cause, and
a full bisection would take forever.
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This is necessary to for build artifacts.
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The style package has 40+ MByte of style info (thousands of files),
which is unforunately large.
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