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* entity updater: es['publisher_type'] not always setBryan Newbold2020-08-141-1/+1
| | | | This is a small bugfix for a production issue.
* Merge branch 'bnewbold-ingest-improvements' into 'master'Martin Czygan2020-08-138-38/+120
|\ | | | | | | | | ingest behavior changes; some datacite metadata tweaks See merge request webgroup/fatcat!78
| * entity update: change big5 ingest behaviorBryan Newbold2020-08-111-9/+15
| | | | | | | | | | | | | | | | | | In addition to changing the OA default, this was the main intended behavior change in this group of commits: want to ingest fewer attempts that we *expect* to fail, but default to ingest/crawl attempt if we are uncertain. This is because there is a long tail of journals that register DOIs and are defacto OA (fulltext is available), but we don't have metadata indicating them as such.
| * datacite importer: update test cases for 'Additional file' as component, not ↵Bryan Newbold2020-08-115-5/+5
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| * entity update: default to ingest non-OA worksBryan Newbold2020-08-111-9/+10
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| * entity update: skip ingest of figshare+zenodo 'group' DOIsBryan Newbold2020-08-111-0/+15
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| * datacite import: figshare-specific hacksBryan Newbold2020-08-112-3/+4
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| * datacite import: refactor release_type detection into static methodBryan Newbold2020-08-111-14/+51
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| * datacite import: refactor publisher-specific hacks into static methodBryan Newbold2020-08-111-15/+29
| | | | | | | | Also tweak title/publisher detection to use DOI prefixes
| * update crawl blocklist for SPNv2 requests which mostly failBryan Newbold2020-08-101-2/+10
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* | Merge branch 'martin-datacite-json-decode-err-sentry-38625' into 'master'bnewbold2020-08-101-1/+8
|\ \ | |/ |/| | | | | harvest: datacite API yields HTTP 200 with broken JSON See merge request webgroup/fatcat!77
| * harvest: datacite API yields HTTP 200 with broken JSONMartin Czygan2020-08-101-1/+8
|/ | | | As a first step: log response body for debugging.
* release ES transform tweaksBryan Newbold2020-08-071-3/+5
| | | | | | | | pass-through publisher_type from container extra metadata (ES field already existed; this is from newer chocula metadata) count arxiv and PMCID papers which haven't been crawled (by IA) as "dark", not "bright"
* Merge branch 'bnewbold-work-dumps' into 'master'bnewbold2020-08-056-19/+237
|\ | | | | | | | | release dumps grouped by work_id See merge request webgroup/fatcat!75
| * fatcat export: flush after batch, not per-lineBryan Newbold2020-08-051-1/+1
| | | | | | | | Good catch, thanks Martin
| * proposal for work groupingBryan Newbold2020-08-041-0/+60
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| * include releases_by_work in ident tarballBryan Newbold2020-08-041-1/+2
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| * update SQL dump docs with group-by-work command (by default)Bryan Newbold2020-08-041-1/+1
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| * group-by-work mode for fatcat-exportBryan Newbold2020-08-041-15/+157
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| * rust Makefile: fix test commandBryan Newbold2020-08-041-2/+1
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| * WIP: sorted release ident dumpsBryan Newbold2020-08-041-0/+16
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* | Merge branch 'bnewbold-chocula-import-tweaks' into 'master'bnewbold2020-08-051-12/+22
|\ \ | |/ |/| | | | | chocula import tweaks See merge request webgroup/fatcat!74
| * chocula import update tweaksBryan Newbold2020-08-041-10/+14
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| * more update keys and cases for chocula importerBryan Newbold2020-08-041-5/+11
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| * fix key name mismatch in chocula importerBryan Newbold2020-08-041-1/+1
|/ | | | chocula 'export-fatcat' uses 'ident', not 'fatcat_ident'
* Merge branch 'bnewbold-editing' into 'master'bnewbold2020-08-0329-404/+1368
|\ | | | | | | | | editing improvements See merge request webgroup/fatcat!73
| * web: add links to deletion pages from edit pagesBryan Newbold2020-07-314-0/+13
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| * update top-level README (checklist done)Bryan Newbold2020-07-311-1/+1
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| * editing: withdrawn_status, release_yearBryan Newbold2020-07-312-24/+44
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| * release form validators and tweak labelsBryan Newbold2020-07-311-8/+37
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| * fix typo bug resulting in lost/bad ext_id web editsBryan Newbold2020-07-312-2/+16
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| * implement webface entity deletionBryan Newbold2020-07-313-27/+308
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| * routes: handle case of viewing deleted entity in editgroup contextBryan Newbold2020-07-304-8/+35
| | | | | | | | | | | | Eg, consider deleting an entity. When viewing the editgroup, want to be able to click the deleted entity and see the "deleted entity" page instead of a generic 404.
| * TOML editing proposalBryan Newbold2020-07-301-0/+43
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| * remove some meta-fields from TOML form (all entities)Bryan Newbold2020-07-301-1/+5
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| * fix search redirect codes in new testsBryan Newbold2020-07-301-4/+4
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| * wire up new TOML viewsBryan Newbold2020-07-3014-83/+256
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| * generic HTML views for TOML editingBryan Newbold2020-07-304-0/+80
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| * editing: more 'raise' status instead of 'abort()'Bryan Newbold2020-07-301-1/+1
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| * generic helpers for TOML editing routesBryan Newbold2020-07-302-10/+201
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| * basic toml transform helperBryan Newbold2020-07-303-4/+42
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| * pipenv: lock pycountry to 19.10 versionBryan Newbold2020-07-302-7/+7
| | | | | | | | datacite importer had errors otherwise
| * pipenv: add toml library (and update lock)Bryan Newbold2020-07-302-276/+327
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| * lock loginpass version to prevent conflicting authlib versionBryan Newbold2020-07-301-1/+1
| | | | | | | | | | May be possible to upgrade both of these libraries together, but that isn't the purpose of current development.
* | fix search redirect codes in new testsBryan Newbold2020-07-311-4/+4
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* simple search route increased coverageBryan Newbold2020-07-301-0/+27
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* comments documenting tuple/dict types in graphics.pyBryan Newbold2020-07-301-0/+11
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* minor lint fixesBryan Newbold2020-07-302-3/+1
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* control shadow preservation display with a flagBryan Newbold2020-07-305-19/+80
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* coverage search: 'recent' endpoint test (minimal)Bryan Newbold2020-07-301-1/+32
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