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guide: link to bulk exports, most recent first
See merge request webgroup/fatcat!70
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web ES search refactor
See merge request webgroup/fatcat!68
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Moved all the request_cache=True param calls to just before ES request
exectuation. The former ordering "just worked", but pylint didn't like
it, and I suspose it was not as idiomatic as it should have been.
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Instead of using 'responses' mock of 'requests' library.
Tried using 'elasticmock' helper but it didn't work.
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Based on fatcat-scholar refactoring.
This doesn't include refactoring of stats, aggregates, or histograms
yet, just the direct queries.
Don't have any test coverage yet; intend to try elasticmock or figuring
out how to ingest mock JSON results directly.
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more lint fixes
See merge request webgroup/fatcat!69
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Oh no!
This bug may actually have had significant negative impact on metadata
in fatcat, in terms of missing container_id associations with pubmed
entities. There are about 500k release entities with a PMID but no
container_id. Of those, 89k have at least a container_name. Unclear how
many would have matched to ISSN-L and thus to a container.
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We are python3.7 now, so this isn't needed.
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These should not have any behavior changes, though a number of exception
catches are now more general, and there may be long-tail exceptions
getting thrown in these statements.
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The pytest fixture syntax interacts weirdly with flake8 tests, so ignore
the "redefinition" and "unused variable" errors more carefully for .py
files under ./tests/
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preservation year offset
See merge request webgroup/fatcat!67
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Thanks @martin
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Frequently when looking at preservation coverage of journals, the
current year shows as "un-preserved" when in fact there is robust KBART
(keepers, eg CLOCKSS/Portico) coverage. This is partially because we
don't update containers with KBART year spans very frequently (which is
on us), and partially because KBART reports are often a bit out of day
(eg, doesn't show coverage for the current year. For that matter, they
probably take a few months to update the previous year as well, but that
is a larger time span to fudge over.
This patch means we will count Portico/LOCKSS/etc coverage for "last
year" to count as coverage of publications dated "this year". Note that
for this to be effective/correct, it is assumed that we will update
containers with coverage year spans at least once a year, and that we
will re-index all releases at least once a year.
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datacite: address duplicated contributor issue
See merge request webgroup/fatcat!65
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Use string comparison.
* https://fatcat.wiki/release/spjysmrnsrgyzgq6ise5o44rlu/contribs
* https://api.datacite.org/dois/10.25940/roper-31098406
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datacite: mitigate sentry #44035
See merge request webgroup/fatcat!66
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According to sentry, running `c.get('nameIdentifiers', []) or []` on a c with value:
```
{'affiliation': [],
'familyName': 'Guidon',
'givenName': 'Manuel',
'nameIdentifiers': {'nameIdentifier': 'https://orcid.org/0000-0003-3543-6683',
'nameIdentifierScheme': 'ORCID',
'schemeUri': 'https://orcid.org'},
'nameType': 'Personal'}
```
results in a string, which I cannot reproduce. The document in question at:
https://api.datacite.org/dois/10.26275/kuw1-fdls seems fine, too.
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arxiv: address 503, "Retry after specified interval" error
See merge request webgroup/fatcat!64
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datacite: fix attribute error
See merge request webgroup/fatcat!63
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refs: #44035
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lint cleanups
See merge request webgroup/fatcat!62
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