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* bulk edit updatesBryan Newbold2019-12-261-3/+4
* orcid: skip non-person ORCID recordsBryan Newbold2019-12-261-0/+4
* Merge branch 'martin-datacite-daily-harvest' into 'master'Martin Czygan2019-12-263-5/+73
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| * datacite: fix harvest testMartin Czygan2019-12-271-1/+1
| * datacite: add simple test and fixture for datacite api interactionMartin Czygan2019-12-272-0/+46
| * datacite: extend range search queryMartin Czygan2019-12-271-1/+1
| * avoid usage of short linksMartin Czygan2019-12-271-2/+2
| * Datacite API v2 throws 400, we cannot recover from, currently.Martin Czygan2019-12-271-0/+4
| * datacite: update documentation, add links to issuesMartin Czygan2019-12-271-10/+5
| * datacite: use v2 of the API (flaky)Martin Czygan2019-12-271-5/+28
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* transform ingests via pmc/pmcid, not pubmed/pmidBryan Newbold2019-12-241-4/+4
* allow arabesque backfill ingests for some source typesBryan Newbold2019-12-241-0/+5
* make chocula URL updates more conservativeBryan Newbold2019-12-241-5/+5
* pubmed: if doing update, also do subtitle schema updateBryan Newbold2019-12-231-1/+9
* doi parsing fixesBryan Newbold2019-12-231-0/+7
* pubmed bulk import notes (from QA)Bryan Newbold2019-12-231-0/+45
* pubmed: improve warning and stderr formattingBryan Newbold2019-12-231-5/+6
* pubmed: use standard identifier cleanersBryan Newbold2019-12-231-17/+14
* pubmed: remove unused extid mapping codeBryan Newbold2019-12-231-29/+0
* pubmed: do reference lookups by defaultBryan Newbold2019-12-231-1/+1
* normalizers: clean_pmid(), and handle nulls in all other cleanersBryan Newbold2019-12-231-0/+31
* pubmed: null doi parsing checkBryan Newbold2019-12-231-1/+1
* add basic MedlineDate year parsingBryan Newbold2019-12-231-0/+11
* add regression test for medlinedate -> year parsingBryan Newbold2019-12-232-0/+102
* arxiv bulk update notesBryan Newbold2019-12-222-2/+49
* fix spn/ingest importer duplication checkBryan Newbold2019-12-221-6/+8
* DB loads take a long time nowBryan Newbold2019-12-211-1/+1
* Merge branch 'bnewbold-datacite-ui' into 'master'bnewbold2019-12-212-9/+13
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| * datacite release links and metadata expansionBryan Newbold2019-12-202-9/+13
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* add 2019-12-20 statsBryan Newbold2019-12-202-0/+148
* spn: incluce link_source/link_source_id in ingest requestBryan Newbold2019-12-201-0/+2
* Merge branch 'bnewbold-pipenv-20191217' into 'master'bnewbold2019-12-182-286/+413
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| * pipenv: update depsBryan Newbold2019-12-172-11/+55
| * pipenv: restrict pytest<5.0.0Bryan Newbold2019-12-172-5/+13
| * pipenv: update Pipfile and Pipfile.lockBryan Newbold2019-12-172-286/+318
| * pipfile: add langcodes and dateparser dependenciesBryan Newbold2019-12-172-1/+44
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* Merge branch 'martin-guide-entity-release-state-stage' into 'master'bnewbold2019-12-171-2/+2
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| * guide fix: code and db uses release_stageMartin Czygan2019-12-171-2/+2
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* Merge branch 'martin-importers-common-print-stderr' into 'master'bnewbold2019-12-161-2/+2
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| * write diagnostic messages to stderrMartin Czygan2019-12-161-2/+2
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* Merge branch 'martin-importers-common-doc-fix' into 'master'Martin Czygan2019-12-141-13/+10
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| * complete parse_record docstringMartin Czygan2019-12-141-0/+6
| * Update EntityImporter docstring.Martin Czygan2019-12-131-13/+4
* | add ingest import file collision protectionBryan Newbold2019-12-131-0/+6
* | fix spn kafka topic env varBryan Newbold2019-12-131-1/+1
* | update ingest request schemaBryan Newbold2019-12-135-16/+44
* | remove default mimetype from ingest-file importerBryan Newbold2019-12-131-2/+1
* | revert accidentally commited test timingBryan Newbold2019-12-131-2/+2
* | ensure importer description arg isn't clobberedBryan Newbold2019-12-123-5/+5
* | tweaks to ingest-file transformBryan Newbold2019-12-121-13/+7
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