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* lint cleanupsBryan Newbold2020-09-172-3/+0
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* web: route constraints on fcids and UUIDsBryan Newbold2020-09-172-101/+103
| | | | | | | | | | | Instead of accepting any string for these parameters and throwing a 400 error if not the correct type, implement better route matching at the framework level and return more 404s. This resolves several outstanding sentry exceptions. The "flask-uuid" was imported and seems to have been configured for this purpose previously, but I guess I never finished configuring it.
* container view: only show OA indicator when knownBryan Newbold2020-09-171-5/+1
| | | | | The "is_oa:False" could be that we just don't know; aren't actually distinguishing between false and blank.
* web container view: hide preservation when no releasesBryan Newbold2020-09-171-8/+6
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* web toml editing: remove sub-entities from TOMLBryan Newbold2020-09-171-0/+4
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* coverage search: pretty display for ES query errorsBryan Newbold2020-09-172-1/+19
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* coverage: clarify available/accessible terminologyBryan Newbold2020-09-171-1/+1
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* homepage: small grammar tweaks (The/the)Bryan Newbold2020-09-111-3/+3
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* ingest: default to crawl protocols.io DOIsBryan Newbold2020-09-101-0/+2
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* Merge branch 'bnewbold-datacite-not-empty-version' into 'master'bnewbold2020-09-113-2/+3
|\ | | | | | | | | datacite: handle case of empty-string version See merge request webgroup/fatcat!83
| * datacite: handle case of empty-string versionBryan Newbold2020-09-103-2/+3
|/ | | | | Includes a tiny tweak to the datacite import sample file to test this code path.
* file_meta import notesBryan Newbold2020-09-041-0/+75
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* update stats snapshotBryan Newbold2020-09-032-0/+47
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* remove spurious print statementBryan Newbold2020-09-031-1/+0
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* Merge branch 'bnewbold-file-meta-cleanups' into 'master'Martin Czygan2020-09-033-0/+149
|\ | | | | | | | | generic file entity clean-ups as part of file_meta importer See merge request webgroup/fatcat!82
| * generic file entity clean-ups as part of file_meta importerBryan Newbold2020-09-023-0/+149
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* Merge branch 'bnewbold-filemeta'Bryan Newbold2020-08-275-0/+162
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| * fix comment typo (thanks martin)Bryan Newbold2020-08-271-1/+1
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| * fixes and test coverage for file_meta importerBryan Newbold2020-08-214-6/+82
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| * initial implementation of file_meta importerBryan Newbold2020-08-213-0/+86
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* | Merge branch 'bnewbold-meta-tags' into 'master'Martin Czygan2020-08-251-2/+1
|\ \ | |/ |/| | | | | meta tags See merge request webgroup/fatcat!81
| * remove typo (isbn:) from metadata DC.language fieldBryan Newbold2020-08-211-1/+1
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| * remove placeholder description meta tagBryan Newbold2020-08-201-1/+0
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* Merge branch 'bnewbold-sitemap' into 'master'bnewbold2020-08-2010-7/+206
|\ | | | | | | | | basic sitemap setup See merge request webgroup/fatcat!79
| * fix SearchAction nesting in WebSite (schema.org)Bryan Newbold2020-08-201-5/+2
| | | | | | | | | | This is not related to sitemap changes, but I was reminded in google search tools when validating site.
| * sitemap fixes from testingBryan Newbold2020-08-194-9/+20
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| * update robots.txt and sitemap.xmlBryan Newbold2020-08-194-2/+52
| | | | | | | | | | | | - show minimal robots/sitemap if not in prod environment - default to allow all in robots.txt; link to sitemap index files - basic sitemap.xml without entity-level links
| * iterate on sitemap generationBryan Newbold2020-08-196-7/+119
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| * initial sitemap.xml notes/templateBryan Newbold2020-08-192-0/+29
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* bulk edit log: add notes on recent chocula importBryan Newbold2020-08-171-0/+17
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* entity updater: handle doi=None case betterBryan Newbold2020-08-141-1/+1
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* entity updater: es['publisher_type'] not always setBryan Newbold2020-08-141-1/+1
| | | | This is a small bugfix for a production issue.
* Merge branch 'bnewbold-ingest-improvements' into 'master'Martin Czygan2020-08-138-38/+120
|\ | | | | | | | | ingest behavior changes; some datacite metadata tweaks See merge request webgroup/fatcat!78
| * entity update: change big5 ingest behaviorBryan Newbold2020-08-111-9/+15
| | | | | | | | | | | | | | | | | | In addition to changing the OA default, this was the main intended behavior change in this group of commits: want to ingest fewer attempts that we *expect* to fail, but default to ingest/crawl attempt if we are uncertain. This is because there is a long tail of journals that register DOIs and are defacto OA (fulltext is available), but we don't have metadata indicating them as such.
| * datacite importer: update test cases for 'Additional file' as component, not ↵Bryan Newbold2020-08-115-5/+5
| | | | | | | | stub
| * entity update: default to ingest non-OA worksBryan Newbold2020-08-111-9/+10
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| * entity update: skip ingest of figshare+zenodo 'group' DOIsBryan Newbold2020-08-111-0/+15
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| * datacite import: figshare-specific hacksBryan Newbold2020-08-112-3/+4
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| * datacite import: refactor release_type detection into static methodBryan Newbold2020-08-111-14/+51
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| * datacite import: refactor publisher-specific hacks into static methodBryan Newbold2020-08-111-15/+29
| | | | | | | | Also tweak title/publisher detection to use DOI prefixes
| * update crawl blocklist for SPNv2 requests which mostly failBryan Newbold2020-08-101-2/+10
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* | Merge branch 'martin-datacite-json-decode-err-sentry-38625' into 'master'bnewbold2020-08-101-1/+8
|\ \ | |/ |/| | | | | harvest: datacite API yields HTTP 200 with broken JSON See merge request webgroup/fatcat!77
| * harvest: datacite API yields HTTP 200 with broken JSONMartin Czygan2020-08-101-1/+8
|/ | | | As a first step: log response body for debugging.
* release ES transform tweaksBryan Newbold2020-08-071-3/+5
| | | | | | | | pass-through publisher_type from container extra metadata (ES field already existed; this is from newer chocula metadata) count arxiv and PMCID papers which haven't been crawled (by IA) as "dark", not "bright"
* Merge branch 'bnewbold-work-dumps' into 'master'bnewbold2020-08-056-19/+237
|\ | | | | | | | | release dumps grouped by work_id See merge request webgroup/fatcat!75
| * fatcat export: flush after batch, not per-lineBryan Newbold2020-08-051-1/+1
| | | | | | | | Good catch, thanks Martin
| * proposal for work groupingBryan Newbold2020-08-041-0/+60
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| * include releases_by_work in ident tarballBryan Newbold2020-08-041-1/+2
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| * update SQL dump docs with group-by-work command (by default)Bryan Newbold2020-08-041-1/+1
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| * group-by-work mode for fatcat-exportBryan Newbold2020-08-041-15/+157
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