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* datacite: skip empty abstractsMartin Czygan2021-10-014-2/+95
| | | | | Do not add abstracts where `clean` results in the empty string - this violates a constraint: `either abstract_sha1 or content is required`
* default ingest request topic now '-daily'; configurable for ingest_tool.pyBryan Newbold2021-09-304-4/+9
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* Merge branch 'martin-pubmed-ftp-extramuros' into 'master'Martin Czygan2021-09-091-24/+21
|\ | | | | | | | | pubmed: workaround a networking issue See merge request webgroup/fatcat!118
| * pubmed: workaround a networking issueMartin Czygan2021-09-091-24/+21
| | | | | | | | | | | | use an http proxy (https://github.com/miku/ftpup) to fetch files from FTP, keep some retry logic; also, hardcoding the proxy path as this should be a temporary workaround
* | trivial blank line lintBryan Newbold2021-09-081-1/+0
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* | Merge branch 'master' of git.archive.org:webgroup/fatcatBryan Newbold2021-09-081-2/+31
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| * Merge branch 'martin-pubmed-use-lftp' into 'master'Martin Czygan2021-09-081-2/+31
| |\ | | | | | | | | | | | | pubmed: add option to ftp download with lftp See merge request webgroup/fatcat!117
| | * pubmed: add option to ftp download with lftpMartin Czygan2021-09-081-2/+31
| |/ | | | | | | | | lftp is a classic command line ftp client, and we hope that its retry capabilities are enough of a workaround for the current networking issue
* / sql_dumps: set collection at upload timeBryan Newbold2021-09-021-2/+5
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* Merge branch 'martin-pubmed-eof-sentry-92151' into 'master'Martin Czygan2021-08-211-8/+21
|\ | | | | | | | | pubmed harvester: add basic retry logic See merge request webgroup/fatcat!116
| * pubmed harvester: add basic retry logicMartin Czygan2021-08-201-8/+21
|/ | | | | | | | Related to a previous issue with seemingly random EOFError from FTP connections, this patch wrap "ftpretr" helper function with a basic retry. Refs: fatcat-workers/issues/92151, fatcat-workers/issues/91102
* guide: remove accidental duplicated background sectionBryan Newbold2021-08-181-9/+0
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* cgraph -> refcatBryan Newbold2021-08-132-2/+2
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* web: fix stats rowspan (oops)Bryan Newbold2021-08-121-1/+1
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* web: remove confusing 'references' row from stats tableBryan Newbold2021-08-121-3/+0
| | | | Now that we have refcat, which is a different number
* Merge branch 'martin-guide-ref-minor-tweaks' into 'master'bnewbold2021-08-091-3/+4
|\ | | | | | | | | guide: reference graph, minor tweaks See merge request webgroup/fatcat!115
| * guide: reference graph, minor tweaksMartin Czygan2021-08-071-3/+4
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* guide: expand on refcatBryan Newbold2021-08-063-31/+160
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* guide: update and rename search index pageBryan Newbold2021-08-063-13/+16
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* guide: update bibliography, blog linksBryan Newbold2021-08-061-11/+11
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* Merge branch 'martin-guide-ref' into 'master'bnewbold2021-08-061-2/+22
|\ | | | | | | | | guide: draft notes on background and mode of operatio See merge request webgroup/fatcat!114
| * guide: draft notes on background and mode of operatioMartin Czygan2021-08-061-2/+22
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* refs: default to *not* consolidating worksBryan Newbold2021-08-061-1/+1
| | | | | | | We don't handle counts for consolidated refs yet, so just don't consolidate. This should fix, eg, "Showing 1-18 of 19" type UX confusion, with the trade-off that some works will be duplicated in inbound ref tables.
* web: update front-page static statsBryan Newbold2021-08-061-3/+3
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* prod stats snapshotBryan Newbold2021-08-064-0/+47
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* Merge branch 'bnewbold-refs-apis'Bryan Newbold2021-08-0624-79/+2313
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| * refs: format (commas) large refs hit countsBryan Newbold2021-08-061-1/+1
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| * refs web: correct URL to refs section of guideBryan Newbold2021-08-041-1/+1
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| * refs: web UI tweaks for iterated CSL schemaBryan Newbold2021-08-032-6/+26
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| * start CHANGELOG for refs workBryan Newbold2021-07-274-0/+45
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| * refs: fix typo preventing CSL from rendering in refs outputBryan Newbold2021-07-271-1/+1
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| * refs: start the most basic/minimal web refs test coverage ('integration' level)Bryan Newbold2021-07-274-0/+1094
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| * refs: revert fatcat-pubmed -> pubmed truncationBryan Newbold2021-07-271-4/+1
| | | | | | | | This was just going to be confusing
| * refs: lint fixesBryan Newbold2021-07-272-2/+3
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| * refs: several small improvements to web UIBryan Newbold2021-07-275-35/+71
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| * refs: slightly better match form (will change)Bryan Newbold2021-07-271-42/+46
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| * refs: show up to 8 authors in summary tablesBryan Newbold2021-07-271-4/+4
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| * refs: support for wikipedia outbound refs, and display in tablesBryan Newbold2021-07-274-8/+69
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| * refs: fix offset/limit bugBryan Newbold2021-07-271-1/+1
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| * refs: generalize web endpoints; JSON content negotiation; openlibrary ↵Bryan Newbold2021-07-234-41/+166
| | | | | | | | inbound view; etc
| * refs: change mind about URL structure againBryan Newbold2021-07-232-7/+7
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| * web: refactor refs table into separate refs_macros fileBryan Newbold2021-07-233-74/+127
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| * refs: small refactors/tweaksBryan Newbold2021-07-231-11/+17
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| * remove unused imports (lint)Bryan Newbold2021-07-233-8/+4
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| * web: always log upstream errors (may be redundant)Bryan Newbold2021-07-231-0/+2
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| * pylint: skip pydantic import check (dynamic/extensions)Bryan Newbold2021-07-232-8/+4
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| * refs: refactor web paths; enrich refs as generic; remove old refs linkBryan Newbold2021-07-235-129/+91
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| * refs fetch: add some hacks; sort hitsBryan Newbold2021-07-231-6/+16
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| * release view: improve biblio metadata display in central columnBryan Newbold2021-07-231-13/+14
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| * match UI: improve form layoutBryan Newbold2021-07-231-13/+16
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