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* WIP: start fixing types and lints from openapi annotationsbnewbold-pythonclient-typesBryan Newbold2021-11-234-7/+8
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* WIP: fixes to existing annotationsBryan Newbold2021-11-232-3/+3
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* more WIP on annotating modelsBryan Newbold2021-11-237-158/+163
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* python: fix api annotations (DefaultApi not ApiClient)Bryan Newbold2021-11-2330-71/+71
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* WIP: more python client type annotationsBryan Newbold2021-11-2332-0/+1188
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* python client: start adding type annotation stubsBryan Newbold2021-11-2312-0/+525
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* python client: mark to include type annotationsBryan Newbold2021-11-232-0/+1
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* python_openapi_client: update metadata tags for next uploadBryan Newbold2021-11-231-2/+2
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* commit v0.5.0 deployment notesBryan Newbold2021-11-221-0/+85
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* final CHANGELOG tweak for v0.5.0v0.5.0Bryan Newbold2021-11-221-1/+2
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* Merge branch 'bnewbold-content-scope'Bryan Newbold2021-11-2233-28/+346
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| * update CHANGELOG for v0.5.0Bryan Newbold2021-11-171-1/+18
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| * bump rust code to 0.5.0Bryan Newbold2021-11-175-6/+7
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| * bump python client to 0.5.0Bryan Newbold2021-11-1710-15/+15
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| * because of SQL change, this schema bump does warrent a minor version bump to ↵Bryan Newbold2021-11-171-1/+1
| | | | | | | | v0.5.0 (not v0.4.1)
| * content_scope: include in file ES schema and transformBryan Newbold2021-11-172-0/+2
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| * guide: document content_scope fieldBryan Newbold2021-11-173-1/+49
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| * minimal python test coverage of content_scope fieldsBryan Newbold2021-11-173-0/+6
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| * python code: update python_openapi_client in lockfileBryan Newbold2021-11-171-1/+1
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| * update python client library codegen for content_scopeBryan Newbold2021-11-179-17/+95
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| * rust: bump crate version and lockfileBryan Newbold2021-11-172-3/+3
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| * rust: implement content_scopeBryan Newbold2021-11-175-0/+22
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| * SQL implementation of content_scopeBryan Newbold2021-11-172-0/+36
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| * codegen rust code for content_scopeBryan Newbold2021-11-173-4/+19
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| * schema: add content_scope fields, and bump to 0.4.1Bryan Newbold2021-11-171-1/+10
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| * proposal: content_scope fieldBryan Newbold2021-11-171-0/+84
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* | typo: don't expand containers for release revs (TOML)Bryan Newbold2021-11-191-1/+1
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* | web editgroup diff: don't enrich in TOML diff; fix overlapping breakBryan Newbold2021-11-192-5/+8
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* | web generic entity helpers: make enrichment optionalBryan Newbold2021-11-191-18/+49
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* | polish editgroup diff viewBryan Newbold2021-11-184-92/+83
| | | | | | | | Still not as great as it could be, but useful in this state.
* | initial implementation of editgroup 'diff' for reviewBryan Newbold2021-11-174-6/+183
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* | web: fix API URL link for review pages of entitiesBryan Newbold2021-11-171-2/+2
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* updated notes on possible cleanupsBryan Newbold2021-11-171-4/+27
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* ISSN-L dupes check: output all matchesBryan Newbold2021-11-171-1/+1
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* document cleanups run this weekBryan Newbold2021-11-125-0/+244
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* web: handle ES non-int error codes betterBryan Newbold2021-11-121-9/+12
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* Merge branch 'bnewbold-import-refactors' into 'master'bnewbold2021-11-1127-1599/+874
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | import refactors and deprecations Some of these are from old stale branches (the datacite subject metadata patch), but most are from yesterday and today. Sort of a hodge-podge, but the general theme is getting around to deferred cleanups and refactors specific to importer code before making some behavioral changes. The Datacite-specific stuff could use review here. Remove unused/deprecated/dead code: - cdl_dash_dat and wayback_static importers, which were for specific early example entities and have been superseded by other importers - "extid map" sqlite3 feature from several importers, was only used for initial bulk imports (and maybe should not have been used) Refactors: - moved a number of large datastructures out of importer code and into a dedicated static file (`biblio_lookup_tables.py`). Didn't move all, just the ones that were either generic or very large (making it hard to read code) - shuffled around relative imports and some function names ("clean_str" vs. "clean") Some actual behavioral changes: - remove some Datacite-specific license slugs - stop trying to fix double-slashes in DOIs, that was causing more harm than help (some DOIs do actually have double-slashes!) - remove some excess metadata from datacite 'extra' fields
| * update datacite tests for license slug changesBryan Newbold2021-11-102-8/+7
| | | | | | | | | | Use datacite-specific wrapper function, and remove a couple non-OA/TDM-limited licenses.
| * improve lookup_license_slug helper and lookup tableBryan Newbold2021-11-102-56/+62
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| * refactor importer metadata tables into separate file; move some helpers aroundBryan Newbold2021-11-1010-702/+682
| | | | | | | | | | | | | | - MAX_ABSTRACT_LENGTH set in a single place (importer common) - merge datacite license slug table in to common table, removing some TDM-specific licenses (which do not apply in the context of preserving the full work)
| * importers: refactor imports of clean() and other normalization helpersBryan Newbold2021-11-1012-95/+104
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| * remove cdl_dash_dat and wayback_static importersBryan Newbold2021-11-104-596/+0
| | | | | | | | | | | | | | | | Cleaning out dead code. These importers were used to create demonstration fileset and webcapture entities early in development. They have been replaced by the fileset and webcapture ingest importers.
| * datacite import: store less subject metadataBryan Newbold2021-11-101-1/+7
| | | | | | | | | | | | | | | | Many of these 'subject' objects have the equivalent of several lines of text, with complex URLs that don't compress well. I think it is fine we have included these thus far instead of parsing more deeply, but going forward I don't think this nested 'extra' metadata is worth the database space.
| * add notes about 'double slash in DOI' issueBryan Newbold2021-11-091-0/+46
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| * importers: use clean_doi() in many more (all?) importersBryan Newbold2021-11-096-12/+29
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| * clean_doi: stop mutating double-slash DOIs, except for 10.1037 prefixBryan Newbold2021-11-091-1/+2
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| * remove deprecated extid sqlite3 lookup table feature from importersBryan Newbold2021-11-0910-203/+10
| | | | | | | | | | | | | | | | This was used during initial bulk imports, but is no longer used and could create serious metadata problems if used accidentially. In retrospect, it also made metadata provenance less transparent, and may have done more harm than good overall.
* | Merge branch 'bnewbold-cleanups-nov2021' into 'master'bnewbold2021-11-119-1/+1504
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fatcat metadata cleanups/fixups, November 2021 Three cleanups implemented in this branch: - update non-lowercase DOIs on releases (couple hundred thousand entities) - fix incorrectly imported file/release pairs, on the file entity side (~250k entities) - expand truncated wayback URL timestamps in file entities (up to 10 million entities) Instead of proposals, there are documents for each cleanup in `notes/cleanups/`. Have done spot testing of tens of thousands of entities each in QA, and confident about running in production. Plan is to run updates in the order above. DOI and bugfix updates will go fairly fast; the wayback timestamp updates will go slower, and result in large re-indexing load both in fatcat and scholar, because both release and work entities will get triggered for update when file entities are updated.
| * | wayback ts cleanup: one more filter tweakBryan Newbold2021-11-091-1/+2
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| * | update cleanups notesBryan Newbold2021-11-092-0/+72
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