diff options
Diffstat (limited to 'python')
| -rw-r--r-- | python/fatcat_tools/importers/datacite.py | 222 |
1 files changed, 181 insertions, 41 deletions
diff --git a/python/fatcat_tools/importers/datacite.py b/python/fatcat_tools/importers/datacite.py index faa8e2be..e486ba90 100644 --- a/python/fatcat_tools/importers/datacite.py +++ b/python/fatcat_tools/importers/datacite.py @@ -6,6 +6,7 @@ Example doc at: https://gist.github.com/miku/5610a2d64e3fee82d16f5d3f3a295fc8 from .common import EntityImporter import dateparser +import langcodes import datetime import fatcat_openapi_client import json @@ -18,36 +19,132 @@ CONTAINER_TYPE_MAP = { 'Book Series': 'book-series', } +# The docs/guide should be the cannonical home for these mappings; update there +# first. +# +# > select count(*), release_type from release_rev group by release_type order by count(*) desc; +# +# count | release_type +# ----------+------------------- +# 95030004 | article-journal +# 13477878 | chapter +# 5926811 | paper-conference +# 2169642 | article +# 1806415 | dataset +# 1548614 | book +# 1390304 | +# 818351 | report +# 815684 | entry +# 307998 | standard +# 297769 | thesis +# 261426 | letter +# 148093 | post +# 122736 | editorial +# 99225 | stub +# 96219 | review-book +# 22854 | peer_review +# 19078 | interview +# 16278 | article-newspaper +# 3973 | speech +# 3536 | legal_case +# 2264 | abstract +# 1626 | legislation +# 1053 | retraction +# 85 | component +# (25 rows) +# +# Map various datacite type types to CSL-ish types. None means TODO or remove. +DATACITE_TYPE_MAP = { + 'ris': { + 'THES': 'thesis', + 'SOUND': None, + 'CHAP': 'chapter', + 'FIGURE': None, + 'RPRT': 'report', + 'JOUR': 'article-journal', + 'MPCT': None, + 'GEN': None, + 'BOOK': 'book', + 'DATA': 'dataset', + 'COMP': None, + }, + 'schemaOrg': { + 'Dataset': 'dataset', + 'Book': 'book', + 'ScholarlyArticle': 'article', + 'ImageObject': 'graphic', + 'Collection': None, + 'MediaObject': None, + 'Event': None, + 'SoftwareSourceCode': None, + 'Chapter': 'chapter', + 'CreativeWork': None, + 'PublicationIssue': 'article', + 'AudioObject': None, + 'Thesis': 'thesis', + }, + 'citeproc': { + 'dataset': 'dataset', + 'chapter': 'chapter', + 'article-journal': 'article-journal', + 'song': 'song', + 'article': 'article', + 'report': 'report', + 'graphic': 'graphic', + 'thesis': 'thesis', + 'book': 'book', + }, + 'bibtex': { + 'phdthesis': 'thesis', + 'inbook': 'chapter', + 'misc': None, + 'article': 'article-journal', + 'book': 'book', + }, + 'resourceTypeGeneral': { + 'Image': None, + 'Dataset': 'dataset', + 'PhysicalObject': None, + 'Collection': None, + 'Text': None, + 'Sound': None, + 'InteractiveResource': None, + 'Event': None, + 'Software': None, + 'Other': None, + 'Workflow': None, + 'Audiovisual': None, + } +} + + # TODO(martin): merge this with other maps, maybe. LICENSE_SLUG_MAP = { - "//creativecommons.org/licenses/by/2.0": "CC-BY", + "//creativecommons.org/licenses/by/2.0/": "CC-BY", "//creativecommons.org/licenses/by/2.0/uk/legalcode": "CC-BY", - "//creativecommons.org/licenses/by/3.0": "CC-BY", + "//creativecommons.org/licenses/by/3.0/": "CC-BY", "//creativecommons.org/licenses/by/3.0/us": "CC-BY", - "//creativecommons.org/licenses/by/4.0": "CC-BY", - "//creativecommons.org/licenses/by/4.0/deed.de": "CC-BY", - "//creativecommons.org/licenses/by/4.0/deed.en_US": "CC-BY", - "//creativecommons.org/licenses/by/4.0/legalcode": "CC-BY", - "//creativecommons.org/licenses/by-nc/2.0": "CC-BY-NC", - "//creativecommons.org/licenses/by-nc/3.0": "CC-BY-NC", - "//creativecommons.org/licenses/by-nc/4.0": "CC-BY-NC", + "//creativecommons.org/licenses/by/4.0/": "CC-BY", + "//creativecommons.org/licenses/by/4.0/deed.de/": "CC-BY", + "//creativecommons.org/licenses/by/4.0/deed.en_US/": "CC-BY", + "//creativecommons.org/licenses/by/4.0/legalcode/": "CC-BY", + "//creativecommons.org/licenses/by-nc/2.0/": "CC-BY-NC", + "//creativecommons.org/licenses/by-nc/3.0/": "CC-BY-NC", + "//creativecommons.org/licenses/by-nc/4.0/": "CC-BY-NC", "//creativecommons.org/licenses/by-nc/4.0/legalcode": "CC-BY-NC", - "//creativecommons.org/licenses/by-nc-nd/3.0": "CC-BY-NC-ND", + "//creativecommons.org/licenses/by-nc-nd/3.0/": "CC-BY-NC-ND", "//creativecommons.org/licenses/by-nc-nd/3.0/gr": "CC-BY-NC-ND", - "//creativecommons.org/licenses/by-nc-nd/4.0": "CC-BY-NC-ND", - "//creativecommons.org/licenses/by-nc-nd/4.0": "CC-BY-ND", + "//creativecommons.org/licenses/by-nc-nd/4.0/": "CC-BY-ND", "//creativecommons.org/licenses/by-nc-nd/4.0/legalcode": "CC-BY-ND", - "//creativecommons.org/licenses/by-nc-sa/4.0": "CC-BY-NC-SA", - "//creativecommons.org/licenses/by-nc-sa/4.0": "CC-BY-SA", - "//creativecommons.org/licenses/by-nd/4.0": "CC-BY-ND", + "//creativecommons.org/licenses/by-nc-sa/4.0/": "CC-BY-NC-SA", + "//creativecommons.org/licenses/by-nd/4.0/": "CC-BY-ND", "//creativecommons.org/licenses/by-sa/3.0/de": "CC-BY-SA", "//creativecommons.org/licenses/by-sa/3.0/gr": "CC-BY-SA", - "//creativecommons.org/licenses/by-sa/4.0": "CC-BY-SA", + "//creativecommons.org/licenses/by-sa/4.0/": "CC-BY-SA", "//creativecommons.org/licenses/by-sa/4.0/legalcode": "CC-BY-SA", - "//creativecommons.org/licenses/CC-BY/4.0": "CC-BY", - "//creativecommons.org/licenses/publicdomain/zero/1.0": "CC-0", - "//creativecommons.org/publicdomain/zero/1.0": "CC-0", - "//creativecommons.org/publicdomain/zero/1.0": "CC-0", + "//creativecommons.org/licenses/CC-BY/4.0/": "CC-BY", + "//creativecommons.org/licenses/publicdomain/zero/1.0/": "CC-0", + "//creativecommons.org/publicdomain/zero/1.0/": "CC-0", "//creativecommons.org/publicdomain/zero/1.0/legalcode": "CC-0", "//opensource.org/licenses/MIT": "MIT", "//www.elsevier.com/open-access/userlicense/1.0": "ELSEVIER-USER-1.0", @@ -75,6 +172,7 @@ LICENSE_SLUG_MAP = { # "info:eu-repo/semantics/closedAccess": "", # https://wiki.surfnet.nl/display/standards/info-eu-repo/#info-eu-repo-AccessRights # "info:eu-repo/semantics/embargoedAccess": "", # "info:eu-repo/semantics/openAccess": "", + # Note: Some URLs pointing to licensing terms are not in WB yet (but would be nice). } class DataciteImporter(EntityImporter): @@ -302,12 +400,12 @@ class DataciteImporter(EntityImporter): # "identifierType": "ISSN" # }, # - # "attributes.container.type": [ - # "DataRepository", - # "Journal", - # "Series", - # "Book Series" - # ], + # "attributes.container.type": [ + # "DataRepository", + # "Journal", + # "Series", + # "Book Series" + # ], # # "attributes.container.identifierType": [ # "Handle", @@ -318,6 +416,7 @@ class DataciteImporter(EntityImporter): # "URL", # "ISSN" # ], + # container_id = None container = attributes.get('container', {}) or {} @@ -328,17 +427,18 @@ class DataciteImporter(EntityImporter): if len(issn) == 8: issn = issn[:4] + "-" + issn[4:] issnl = self.issn2issnl(issn) - container_id = self.lookup_issnl(issnl) - - if container_id is None and container.get('title'): - ce = fatcat_openapi_client.ContainerEntity( - issnl=issnl, - container_type=container_type, - name=container.get('title'), - ) - ce_edit = self.create_container(ce) - container_id = ce_edit.ident - self._issnl_id_map[issnl] = container_id + if issnl is not None: + container_id = self.lookup_issnl(issnl) + + if container_id is None and container.get('title'): + ce = fatcat_openapi_client.ContainerEntity( + issnl=issnl, + container_type=container_type, + name=container.get('title'), + ) + ce_edit = self.create_container(ce) + container_id = ce_edit.ident + self._issnl_id_map[issnl] = container_id # > License # @@ -376,11 +476,51 @@ class DataciteImporter(EntityImporter): # "Workflow", # "Audiovisual" # ], + # "attributes.types.citeproc": [ + # "dataset", + # "chapter", + # "article-journal", + # "song", + # "article", + # "report", + # "graphic", + # "thesis", + # "book" + # ], + # + # There is RIS, also. + + # attributes.types.resourceType contains too many things for now. + for typeType in ('citeproc', 'resourceTypeGeneral', 'schemaOrg', 'bibtex', 'ris'): + release_type = attributes.get('types', {}).get(typeType) + if release_type is not None: + break + + # TODO(martin): Skip unmapped release_type entirely? + if release_type is None: + print("datacite unmapped type: {}".format(release_type), file=sys.stderr) + + # > Language. + # attributes.language + + language = None + value = attributes.get('language', '') or '' # As it is written. + try: + language = langcodes.find(value).language + except LookupError: + try: + language = langcodes.get(value).language + except langcodes.tag_parser.LanguageTagError: + pass - # > Extra information. + # > Extra information: license, subjects, ... extra, extra_datacite = dict(), dict() if license_extra: - extra_datacite['license'] = license_extra + extra_datacite = { + 'license': license_extra, + } + if attributes.get('subjects'): + extra_datacite['subjects'] = attributes.get('subjects', []) if extra_datacite: extra['datacite'] = extra_datacite @@ -389,7 +529,7 @@ class DataciteImporter(EntityImporter): re = fatcat_openapi_client.ReleaseEntity( work_id=None, container_id=container_id, - release_type=None, + release_type=release_type, release_stage=None, title=title, # attributes.titles, various titleType subtitle=subtitle, @@ -405,7 +545,7 @@ class DataciteImporter(EntityImporter): volume=None, issue=None, pages=None, - language=None, + language=language, abstracts=None, refs=None, extra=extra, |