diff options
Diffstat (limited to 'python')
-rw-r--r-- | python/Pipfile | 2 | ||||
-rw-r--r-- | python/Pipfile.lock | 384 | ||||
-rw-r--r-- | python/fatcat/changelog_workers.py | 122 | ||||
-rw-r--r-- | python/fatcat/elastic_workers.py | 47 | ||||
-rw-r--r-- | python/fatcat/entity_helpers.py | 100 | ||||
-rw-r--r-- | python/fatcat/worker_common.py | 25 | ||||
-rwxr-xr-x | python/fatcat_worker.py | 62 | ||||
-rw-r--r-- | python/tests/entity_helpers.py | 15 |
8 files changed, 597 insertions, 160 deletions
diff --git a/python/Pipfile b/python/Pipfile index 86091c56..be62c111 100644 --- a/python/Pipfile +++ b/python/Pipfile @@ -24,6 +24,8 @@ flask-marshmallow = "*" flask-uuid = "*" "psycopg2" = "*" flask-debugtoolbar = "*" +pykafka = "*" +python-dateutil = "*" [requires] python_version = "3.5" diff --git a/python/Pipfile.lock b/python/Pipfile.lock index 83b7ebca..da96a24f 100644 --- a/python/Pipfile.lock +++ b/python/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "ab1ff8d09f4d9f779b1662e16feacadb82f179a76466efca078997b02cb64724" + "sha256": "c99945057fc87c7a825a76cfe4d1abdcb99d0e70dc71db770cf259b761c6835c" }, "pipfile-spec": 6, "requires": { @@ -24,10 +24,10 @@ }, "certifi": { "hashes": [ - "sha256:13e698f54293db9f89122b0581843a782ad0934a4fe0172d2a980ba77fc61bb7", - "sha256:9fa520c1bacfb634fa7af20a76bcbd3d5fb390481724c597da32c719a7dca4b0" + "sha256:339dc09518b07e2fa7eda5450740925974815557727d6bd35d319c1524a04a4c", + "sha256:6d58c986d22b038c8c0df30d639f23a3e6d172a05c3583e766f4c0b785c0986a" ], - "version": "==2018.4.16" + "version": "==2018.10.15" }, "chardet": { "hashes": [ @@ -38,10 +38,10 @@ }, "click": { "hashes": [ - "sha256:29f99fc6125fbc931b758dc053b3114e55c77a6e4c6c3a2674a2dc986016381d", - "sha256:f15516df478d5a56180fbf80e68f206010e6d160fc39fa508b65e035fd75130b" + "sha256:2335065e6395b9e67ca716de5f7526736bfa6ceead690adf616d925bdc622b13", + "sha256:5b94b49521f6456670fdb30cd82a4eca9412788a93fa6dd6df72c94d5a8ff2d7" ], - "version": "==6.7" + "version": "==7.0" }, "flask": { "hashes": [ @@ -84,16 +84,17 @@ }, "idna": { "hashes": [ - "sha256:2c6a5de3089009e3da7c5dde64a141dbc8551d5b7f6cf4ed7c2568d0cc520a8f", - "sha256:8c7309c718f94b3a625cb648ace320157ad16ff131ae0af362c9f21b80ef6ec4" + "sha256:156a6814fb5ac1fc6850fb002e0852d56c0c8d2531923a51032d1b70760e186e", + "sha256:684a38a6f903c1d71d6d5fac066b58d7768af4de2b832e426ec79c30daa94a16" ], - "version": "==2.6" + "version": "==2.7" }, "itsdangerous": { "hashes": [ - "sha256:cbb3fcf8d3e33df861709ecaf89d9e6629cff0a217bc2848f1b41cd30d360519" + "sha256:321b033d07f2a4136d3ec762eac9f16a10ccd60f53c0c91af90217ace7ba1f19", + "sha256:b12271b2047cb23eeb98c8b5622e2e5c5e9abd9784a153e9d8ef9cb4dd09d749" ], - "version": "==0.24" + "version": "==1.1.0" }, "jinja2": { "hashes": [ @@ -102,6 +103,13 @@ ], "version": "==2.10" }, + "kazoo": { + "hashes": [ + "sha256:8db774f7bdece7d0dc7decb21539ff0852e42c2ffe1c28d7f1ff6f9292a1c3a4", + "sha256:a5fa2e400c5068cfee9e86b35cf0dab8232b574152d8e3590d823b3e2426ab5e" + ], + "version": "==2.5.0" + }, "markupsafe": { "hashes": [ "sha256:a6be69091dac236ea9c6bc7d012beab42010fa914c459791d627dad4910eb665" @@ -110,51 +118,70 @@ }, "marshmallow": { "hashes": [ - "sha256:171f409d48b44786b7df2793cbd7f1a9062f0fe2c14d547da536b5010f671ade", - "sha256:c231784b5a5d2b26e50c90f3038004a3552ec27658cde6e0a5a7279d0c5a8e26" + "sha256:a2052f62b18f6dad520f465e437f63ab8812423975d48b9ebd30a735466e782a", + "sha256:e1b79eb3b815b49918c64114dda691b8767b48a1f66dd1d8c0cd5842b74257c2" ], - "version": "==2.15.3" + "version": "==2.16.3" }, "marshmallow-sqlalchemy": { "hashes": [ - "sha256:32ff19350a8892b3e8dc954eeeac796576bb89356512f9e1ccd33da63f856930", - "sha256:755b16b64c0273fd8083dbe1e938dff0d49359c76d6238898c9082e3fc55368d" + "sha256:a42cdbd6b623059fca601e1b572cab28f00d4acf36e2cef38094c88424b3dcf1", + "sha256:aacb0a7e0f6b5d489cdb3c10d1ab420f74c21538838026337738e4c6e8848fd8" ], "index": "pypi", - "version": "==0.14.0" + "version": "==0.14.1" }, "psycopg2": { "hashes": [ - "sha256:027ae518d0e3b8fff41990e598bc7774c3d08a3a20e9ecc0b59fb2aaaf152f7f", - "sha256:092a80da1b052a181b6e6c765849c9b32d46c5dac3b81bf8c9b83e697f3cdbe8", - "sha256:0b9851e798bae024ed1a2a6377a8dab4b8a128a56ed406f572f9f06194e4b275", - "sha256:179c52eb870110a8c1b460c86d4f696d58510ea025602cd3f81453746fccb94f", - "sha256:19983b77ec1fc2a210092aa0333ee48811fd9fb5f194c6cd5b927ed409aea5f8", - "sha256:1d90379d01d0dc50ae9b40c863933d87ff82d51dd7d52cea5d1cb7019afd72cd", - "sha256:27467fd5af1dcc0a82d72927113b8f92da8f44b2efbdb8906bd76face95b596d", - "sha256:32702e3bd8bfe12b36226ba9846ed9e22336fc4bd710039d594b36bd432ae255", - "sha256:33f9e1032095e1436fa9ec424abcbd4c170da934fb70e391c5d78275d0307c75", - "sha256:36030ca7f4b4519ee4f52a74edc4ec73c75abfb6ea1d80ac7480953d1c0aa3c3", - "sha256:363fbbf4189722fc46779be1fad2597e2c40b3f577dc618f353a46391cf5d235", - "sha256:6f302c486132f8dd11f143e919e236ea4467d53bf18c451cac577e6988ecbd05", - "sha256:733166464598c239323142c071fa4c9b91c14359176e5ae7e202db6bcc1d2eb5", - "sha256:7cbc3b21ce2f681ca9ad2d8c0901090b23a30c955e980ebf1006d41f37068a95", - "sha256:888bba7841116e529f407f15c6d28fe3ef0760df8c45257442ec2f14f161c871", - "sha256:8966829cb0d21a08a3c5ac971a2eb67c3927ae27c247300a8476554cc0ce2ae8", - "sha256:8bf51191d60f6987482ef0cfe8511bbf4877a5aa7f313d7b488b53189cf26209", - "sha256:8eb94c0625c529215b53c08fb4e461546e2f3fc96a49c13d5474b5ad7aeab6cf", - "sha256:8ebba5314c609a05c6955e5773c7e0e57b8dd817e4f751f30de729be58fa5e78", - "sha256:932a4c101af007cb3132b1f8a9ffef23386acc53dad46536dc5ba43a3235ae02", - "sha256:ad75fe10bea19ad2188c5cb5fc4cdf53ee808d9b44578c94a3cd1e9fc2beb656", - "sha256:aeaba399254ca79c299d9fe6aa811d3c3eac61458dee10270de7f4e71c624998", - "sha256:b178e0923c93393e16646155794521e063ec17b7cc9f943f15b7d4b39776ea2c", - "sha256:b68e89bb086a9476fa85298caab43f92d0a6af135a5f433d1f6b6d82cafa7b55", - "sha256:d74cf9234ba76426add5e123449be08993a9b13ff434c6efa3a07caa305a619f", - "sha256:f3d3a88128f0c219bdc5b2d9ccd496517199660cea021c560a3252116df91cbd", - "sha256:fe6a7f87356116f5ea840c65b032af17deef0e1a5c34013a2962dd6f99b860dd" + "sha256:0b9e48a1c1505699a64ac58815ca99104aacace8321e455072cee4f7fe7b2698", + "sha256:0f4c784e1b5a320efb434c66a50b8dd7e30a7dc047e8f45c0a8d2694bfe72781", + "sha256:0fdbaa32c9eb09ef09d425dc154628fca6fa69d2f7c1a33f889abb7e0efb3909", + "sha256:11fbf688d5c953c0a5ba625cc42dea9aeb2321942c7c5ed9341a68f865dc8cb1", + "sha256:19eaac4eb25ab078bd0f28304a0cb08702d120caadfe76bb1e6846ed1f68635e", + "sha256:3232ec1a3bf4dba97fbf9b03ce12e4b6c1d01ea3c85773903a67ced725728232", + "sha256:36f8f9c216fcca048006f6dd60e4d3e6f406afde26cfb99e063f137070139eaf", + "sha256:59c1a0e4f9abe970062ed35d0720935197800a7ef7a62b3a9e3a70588d9ca40b", + "sha256:6506c5ff88750948c28d41852c09c5d2a49f51f28c6d90cbf1b6808e18c64e88", + "sha256:6bc3e68ee16f571681b8c0b6d5c0a77bef3c589012352b3f0cf5520e674e9d01", + "sha256:6dbbd7aabbc861eec6b910522534894d9dbb507d5819bc982032c3ea2e974f51", + "sha256:6e737915de826650d1a5f7ff4ac6cf888a26f021a647390ca7bafdba0e85462b", + "sha256:6ed9b2cfe85abc720e8943c1808eeffd41daa73e18b7c1e1a228b0b91f768ccc", + "sha256:711ec617ba453fdfc66616db2520db3a6d9a891e3bf62ef9aba4c95bb4e61230", + "sha256:844dacdf7530c5c612718cf12bc001f59b2d9329d35b495f1ff25045161aa6af", + "sha256:86b52e146da13c896e50c5a3341a9448151f1092b1a4153e425d1e8b62fec508", + "sha256:985c06c2a0f227131733ae58d6a541a5bc8b665e7305494782bebdb74202b793", + "sha256:a86dfe45f4f9c55b1a2312ff20a59b30da8d39c0e8821d00018372a2a177098f", + "sha256:aa3cd07f7f7e3183b63d48300666f920828a9dbd7d7ec53d450df2c4953687a9", + "sha256:b1964ed645ef8317806d615d9ff006c0dadc09dfc54b99ae67f9ba7a1ec9d5d2", + "sha256:b2abbff9e4141484bb89b96eb8eae186d77bc6d5ffbec6b01783ee5c3c467351", + "sha256:cc33c3a90492e21713260095f02b12bee02b8d1f2c03a221d763ce04fa90e2e9", + "sha256:d7de3bf0986d777807611c36e809b77a13bf1888f5c8db0ebf24b47a52d10726", + "sha256:db5e3c52576cc5b93a959a03ccc3b02cb8f0af1fbbdc80645f7a215f0b864f3a", + "sha256:e168aa795ffbb11379c942cf95bf813c7db9aa55538eb61de8c6815e092416f5", + "sha256:e9ca911f8e2d3117e5241d5fa9aaa991cb22fb0792627eeada47425d706b5ec8", + "sha256:eccf962d41ca46e6326b97c8fe0a6687b58dfc1a5f6540ed071ff1474cea749e", + "sha256:efa19deae6b9e504a74347fe5e25c2cb9343766c489c2ae921b05f37338b18d1", + "sha256:f4b0460a21f784abe17b496f66e74157a6c36116fa86da8bf6aa028b9e8ad5fe", + "sha256:f93d508ca64d924d478fb11e272e09524698f0c581d9032e68958cfbdd41faef" + ], + "index": "pypi", + "version": "==2.7.5" + }, + "pykafka": { + "hashes": [ + "sha256:6b075909a52cb0c95325bc16ab797bbcdbb37386652ea460705ed4472ce91459", + "sha256:f0bbd394ae6970042a587c99fe4dc0966e67787249d963d4ce2f810dc9490577" ], "index": "pypi", - "version": "==2.7.4" + "version": "==2.8.0" + }, + "python-dateutil": { + "hashes": [ + "sha256:063df5763652e21de43de7d9e00ccf239f953a832941e37be541614732cdfc93", + "sha256:88f9287c0174266bb0d8cedd395cfba9c58e87e5ad86b2ce58859bc11be3cf02" + ], + "index": "pypi", + "version": "==2.7.5" }, "raven": { "hashes": [ @@ -166,11 +193,11 @@ }, "requests": { "hashes": [ - "sha256:6a1b267aa90cac58ac3a765d067950e7dbbf75b1da07e895d1f594193a40a38b", - "sha256:9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e" + "sha256:99dcfdaaeb17caf6e526f32b6a7b780461512ab3f1d992187801694cba42770c", + "sha256:a84b8c9ab6239b578f22d1c21d51b696dcfe004032bb80ea832398d6909d7279" ], "index": "pypi", - "version": "==2.18.4" + "version": "==2.20.0" }, "six": { "hashes": [ @@ -181,17 +208,23 @@ }, "sqlalchemy": { "hashes": [ - "sha256:2d5f08f714a886a1382c18be501e614bce50d362384dc089474019ce0768151c" + "sha256:84412de3794acee05630e7788f25e80e81f78eb4837e7b71d0499129f660486a" ], "index": "pypi", - "version": "==1.2.8" + "version": "==1.2.13" + }, + "tabulate": { + "hashes": [ + "sha256:e4ca13f26d0a6be2a2915428dc21e732f1e44dad7f76d7030b2ef1ec251cf7f2" + ], + "version": "==0.8.2" }, "urllib3": { "hashes": [ - "sha256:06330f386d6e4b195fbfc736b297f58c5a892e4440e54d294d7004e3a9bbea1b", - "sha256:cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f" + "sha256:61bf29cada3fc2fbefad4fdf059ea4bd1b4a86d2b6d15e1c7c0b582b9752fe39", + "sha256:de9529817c93f27c8ccbfead6985011db27bd0ddfcdb2d86f3f663385c6a9c22" ], - "version": "==1.22" + "version": "==1.24.1" }, "werkzeug": { "hashes": [ @@ -204,24 +237,24 @@ "develop": { "astroid": { "hashes": [ - "sha256:032f6e09161e96f417ea7fad46d3fac7a9019c775f202182c22df0e4f714cb1c", - "sha256:dea42ae6e0b789b543f728ddae7ddb6740ba33a49fb52c4a4d9cb7bb4aa6ec09" + "sha256:292fa429e69d60e4161e7612cb7cc8fa3609e2e309f80c224d93a76d5e7b58be", + "sha256:c7013d119ec95eb626f7a2011f0b63d0c9a095df9ad06d8507b37084eada1a8d" ], - "version": "==1.6.4" + "version": "==2.0.4" }, "atomicwrites": { "hashes": [ - "sha256:240831ea22da9ab882b551b31d4225591e5e447a68c5e188db5b89ca1d487585", - "sha256:a24da68318b08ac9c9c45029f4a10371ab5b20e4226738e150e6e7c571630ae6" + "sha256:0312ad34fcad8fac3704d441f7b317e50af620823353ec657a53e981f92920c0", + "sha256:ec9ae8adaae229e4f8446952d204a3e4b5fdd2d099f9be3aaf556120135fb3ee" ], - "version": "==1.1.5" + "version": "==1.2.1" }, "attrs": { "hashes": [ - "sha256:4b90b09eeeb9b88c35bc642cbac057e45a5fd85367b985bd2809c62b7b939265", - "sha256:e0d0eb91441a3b53dab4d9b743eafc1ac44476296a2053b6ca3af0b139faf87b" + "sha256:10cbf6e27dbce8c30807caf056c8eb50917e0eaafe86347671b57254006c3e69", + "sha256:ca4be454458f9dec299268d472aaa5a11f67a4ff70093396e1ceae9c76cf4bbb" ], - "version": "==18.1.0" + "version": "==18.2.0" }, "backcall": { "hashes": [ @@ -232,10 +265,10 @@ }, "certifi": { "hashes": [ - "sha256:13e698f54293db9f89122b0581843a782ad0934a4fe0172d2a980ba77fc61bb7", - "sha256:9fa520c1bacfb634fa7af20a76bcbd3d5fb390481724c597da32c719a7dca4b0" + "sha256:339dc09518b07e2fa7eda5450740925974815557727d6bd35d319c1524a04a4c", + "sha256:6d58c986d22b038c8c0df30d639f23a3e6d172a05c3583e766f4c0b785c0986a" ], - "version": "==2018.4.16" + "version": "==2018.10.15" }, "chardet": { "hashes": [ @@ -244,22 +277,19 @@ ], "version": "==3.0.4" }, - "cookies": { - "hashes": [ - "sha256:15bee753002dff684987b8df8c235288eb8d45f8191ae056254812dfd42c81d3", - 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"sha256:06330f386d6e4b195fbfc736b297f58c5a892e4440e54d294d7004e3a9bbea1b", - "sha256:cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f" + "sha256:61bf29cada3fc2fbefad4fdf059ea4bd1b4a86d2b6d15e1c7c0b582b9752fe39", + "sha256:de9529817c93f27c8ccbfead6985011db27bd0ddfcdb2d86f3f663385c6a9c22" ], - "version": "==1.22" + "version": "==1.24.1" }, "wcwidth": { "hashes": [ diff --git a/python/fatcat/changelog_workers.py b/python/fatcat/changelog_workers.py new file mode 100644 index 00000000..e341ea32 --- /dev/null +++ b/python/fatcat/changelog_workers.py @@ -0,0 +1,122 @@ + +import json +import time +from itertools import islice +from fatcat.worker_common import FatcatWorker +from pykafka.common import OffsetType + + +class FatcatChangelogWorker(FatcatWorker): + """ + Periodically polls the fatcat API looking for new changelogs. When they are + found, fetch them and push (as JSON) into a Kafka topic. + """ + + def __init__(self, api_host_url, kafka_hosts, produce_topic, poll_interval=10.0, offset=None): + # TODO: should be offset=0 + super().__init__(kafka_hosts=kafka_hosts, + produce_topic=produce_topic, + api_host_url=api_host_url) + self.poll_interval = poll_interval + self.offset = offset # the fatcat changelog offset, not the kafka offset + + def most_recent_message(self, topic): + """ + Tries to fetch the most recent message from a given topic. + This only makes sense for single partition topics, though could be + extended with "last N" behavior. + + Following "Consuming the last N messages from a topic" + from https://pykafka.readthedocs.io/en/latest/usage.html#consumer-patterns + """ + consumer = topic.get_simple_consumer( + auto_offset_reset=OffsetType.LATEST, + reset_offset_on_start=True) + offsets = [(p, op.last_offset_consumed - 1) + for p, op in consumer._partitions.items()] + offsets = [(p, (o if o > -1 else -2)) for p, o in offsets] + if -2 in [o for p, o in offsets]: + return None + else: + consumer.reset_offsets(offsets) + msg = islice(consumer, 1) + if msg: + return list(msg)[0].value + else: + return None + + def run(self): + topic = self.kafka.topics[self.produce_topic] + # On start, try to consume the most recent from the topic, and using + # that as the starting offset. Note that this is a single-partition + # topic + if self.offset is None: + print("Checking for most recent changelog offset...") + msg = self.most_recent_message(topic) + if msg: + self.offset = json.loads(msg.decode('utf-8'))['index'] + else: + self.offset = 1 + + with topic.get_sync_producer() as producer: + while True: + latest = int(self.api.get_changelog(limit=1)[0].index) + if latest > self.offset: + print("Fetching changelogs from {} through {}".format( + self.offset+1, latest)) + for i in range(self.offset+1, latest+1): + cle = self.api.get_changelog_entry(i) + obj = self.api.api_client.sanitize_for_serialization(cle) + producer.produce( + message=json.dumps(obj).encode('utf-8'), + partition_key=None, + timestamp=None, + #XXX: timestamp=cle.timestamp, + ) + self.offset = i + print("Sleeping {} seconds...".format(self.poll_interval)) + time.sleep(self.poll_interval) + + +class FatcatEntityUpdatesWorker(FatcatWorker): + """ + Consumes from the changelog topic and publishes expanded entities (fetched + from API) to update topics. + + For now, only release updates are published. + """ + + def __init__(self, api_host_url, kafka_hosts, consume_topic, release_topic): + super().__init__(kafka_hosts=kafka_hosts, + consume_topic=consume_topic, + api_host_url=api_host_url) + self.release_topic = release_topic + self.consumer_group = "entity-updates" + + def run(self): + changelog_topic = self.kafka.topics[self.consume_topic] + release_topic = self.kafka.topics[self.release_topic] + + consumer = changelog_topic.get_balanced_consumer( + consumer_group=self.consumer_group, + managed=True, + auto_offset_reset=OffsetType.LATEST, + reset_offset_on_start=False, + ) + + with release_topic.get_sync_producer() as producer: + for msg in consumer: + cle = json.loads(msg.value.decode('utf-8')) + #print(cle) + release_edits = cle['editgroup']['edits']['releases'] + for re in release_edits: + ident = re['ident'] + release = self.api.get_release(ident, expand="files,container") + release_dict = self.api.api_client.sanitize_for_serialization(release) + producer.produce( + message=json.dumps(release_dict).encode('utf-8'), + partition_key=ident.encode('utf-8'), + timestamp=None, + ) + consumer.commit_offsets() + diff --git a/python/fatcat/elastic_workers.py b/python/fatcat/elastic_workers.py new file mode 100644 index 00000000..3d2e9c39 --- /dev/null +++ b/python/fatcat/elastic_workers.py @@ -0,0 +1,47 @@ + +import json +import time +import requests +from fatcat.worker_common import FatcatWorker +from fatcat_client.models import ReleaseEntity +from fatcat.entity_helpers import * +from pykafka.common import OffsetType + + +class FatcatElasticReleaseWorker(FatcatWorker): + """ + Consumes from release-updates topic and pushes into (presumably local) + elasticsearch. + + Uses a consumer group to manage offset. + """ + + def __init__(self, kafka_hosts, consume_topic, poll_interval=10.0, offset=None, + elastic_backend="http://localhost:9200", elastic_index="fatcat"): + super().__init__(kafka_hosts=kafka_hosts, + consume_topic=consume_topic, + api_host_url=None) + self.consumer_group = "elastic-updates" + self.elastic_backend = elastic_backend + self.elastic_index = elastic_index + + def run(self): + consume_topic = self.kafka.topics[self.consume_topic] + + consumer = consume_topic.get_balanced_consumer( + consumer_group=self.consumer_group, + managed=True, + ) + + for msg in consumer: + json_str = msg.value.decode('utf-8') + release = entity_from_json(json_str, ReleaseEntity) + #print(release) + elastic_endpoint = "{}/{}/release/{}".format( + self.elastic_backend, + self.elastic_index, + release.ident) + print("Updating document: {}".format(elastic_endpoint)) + resp = requests.post(elastic_endpoint, json=release.to_elastic_dict()) + assert resp.status_code in (200, 201) + consumer.commit_offsets() diff --git a/python/fatcat/entity_helpers.py b/python/fatcat/entity_helpers.py new file mode 100644 index 00000000..c454536b --- /dev/null +++ b/python/fatcat/entity_helpers.py @@ -0,0 +1,100 @@ + +import collections +from fatcat_client.models import ReleaseEntity +from fatcat_client.api_client import ApiClient + +def entity_to_json(entity): + ac = ApiClient() + return ac.sanitize_for_serialization(entity) + +def entity_from_json(json_str, entity_type): + """ + Hack to take advantage of the code-generated deserialization code + """ + ac = ApiClient() + thing = collections.namedtuple('Thing', ['data']) + thing.data = json_str + return ac.deserialize(thing, entity_type) + +def release_elastic_dict(release): + """ + Converts from an entity model/schema to elasticsearch oriented schema. + + Returns: dict + """ + + if release.state != 'active': + raise ValueError("Entity is not 'active'") + + # First, the easy ones (direct copy) + t = dict( + ident = release.ident, + revision = release.revision, + title = release.title, + release_type = release.release_type, + release_status = release.release_status, + language = release.language, + doi = release.doi, + pmid = release.pmid, + pmcid = release.pmcid, + isbn13 = release.isbn13, + core_id = release.core_id, + wikidata_qid = release.wikidata_qid + ) + + if release.release_date: + # TODO: resolve why this can be either a string or datetime + if type(release.release_date) == str: + t['release_date'] = release.release_date + else: + t['release_date'] = release.release_date.strftime('%F') + + container = release.container + container_is_kept = False + if container: + t['publisher'] = container.publisher + t['container_name'] = container.name + t['container_issnl'] = container.issnl + container_extra = container.extra + if container_extra: + t['container_is_oa'] = container_extra.get('is_oa') + container_is_kept = container_extra.get('is_kept', False) + t['container_is_longtail_oa'] = container_extra.get('is_longtail_oa') + else: + t['publisher'] = release.publisher + + files = release.files or [] + t['file_count'] = len(files) + in_wa = False + in_ia = False + t['file_pdf_url'] = None + for f in files: + is_pdf = 'pdf' in f.get('mimetype', '') + for url in f.get('urls', []): + if url.get('rel', '') == 'webarchive': + in_wa = True + if '//web.archive.org/' in url['url'] or '//archive.org/' in url['url']: + in_ia = True + if is_pdf: + t['file_pdf_url'] = url['url'] + if not t['file_pdf_url'] and is_pdf: + t['file_pdf_url'] = url['url'] + t['file_in_webarchive'] = in_wa + t['file_in_ia'] = in_ia + + extra = release.extra or dict() + if extra: + t['in_shadow'] = extra.get('in_shadow') + if extra.get('grobid') and extra['grobid'].get('is_longtail_oa'): + t['container_is_longtail_oa'] = True + t['any_abstract'] = bool(release.abstracts) + t['is_kept'] = container_is_kept or extra.get('is_kept', False) + + t['ref_count'] = len(release.refs or []) + t['contrib_count'] = len(release.contribs or []) + contrib_names = [] + for c in (release.contribs or []): + if c.raw_name: + contrib_names.append(c.raw_name) + t['contrib_names'] = contrib_names + return t diff --git a/python/fatcat/worker_common.py b/python/fatcat/worker_common.py new file mode 100644 index 00000000..77ea2c15 --- /dev/null +++ b/python/fatcat/worker_common.py @@ -0,0 +1,25 @@ + +import re +import sys +import csv +import json +import itertools +import fatcat_client +from pykafka import KafkaClient +from fatcat_client.rest import ApiException + + +class FatcatWorker: + """ + Common code for for Kafka producers and consumers. + """ + + def __init__(self, kafka_hosts, produce_topic=None, consume_topic=None, api_host_url=None): + if api_host_url: + conf = fatcat_client.Configuration() + conf.host = api_host_url + self.api = fatcat_client.DefaultApi(fatcat_client.ApiClient(conf)) + self.kafka = KafkaClient(hosts=kafka_hosts, broker_version="1.0.0") + self.produce_topic = produce_topic + self.consume_topic = consume_topic + diff --git a/python/fatcat_worker.py b/python/fatcat_worker.py new file mode 100755 index 00000000..50ff0fb7 --- /dev/null +++ b/python/fatcat_worker.py @@ -0,0 +1,62 @@ +#!/usr/bin/env python3 + +import sys +import argparse +from fatcat.changelog_workers import FatcatChangelogWorker, FatcatEntityUpdatesWorker +from fatcat.elastic_workers import FatcatElasticReleaseWorker + +def run_changelog_worker(args): + topic = "fatcat-{}.changelog".format(args.env) + worker = FatcatChangelogWorker(args.api_host_url, args.kafka_hosts, topic, + args.poll_interval) + worker.run() + +def run_entity_updates_worker(args): + changelog_topic = "fatcat-{}.changelog".format(args.env) + release_topic = "fatcat-{}.release-updates".format(args.env) + worker = FatcatEntityUpdatesWorker(args.api_host_url, args.kafka_hosts, + changelog_topic, release_topic) + worker.run() + +def run_elastic_release_worker(args): + consume_topic = "fatcat-{}.release-updates".format(args.env) + worker = FatcatElasticReleaseWorker(args.kafka_hosts, + consume_topic) + worker.run() + +def main(): + parser = argparse.ArgumentParser() + parser.add_argument('--debug', + action='store_true', + help="enable debug logging") + parser.add_argument('--api-host-url', + default="http://localhost:9411/v0", + help="fatcat API host/port to use") + parser.add_argument('--kafka-hosts', + default="localhost:9092", + help="list of Kafka brokers (host/port) to use") + parser.add_argument('--env', + default="qa", + help="Kafka topic namespace to use (eg, prod, qa)") + subparsers = parser.add_subparsers() + + sub_changelog = subparsers.add_parser('changelog') + sub_changelog.set_defaults(func=run_changelog_worker) + sub_changelog.add_argument('--poll-interval', + help="how long to wait between polling (seconds)", + default=10.0, type=float) + + sub_entity_updates = subparsers.add_parser('entity-updates') + sub_entity_updates.set_defaults(func=run_entity_updates_worker) + + sub_elastic_release = subparsers.add_parser('elastic-release') + sub_elastic_release.set_defaults(func=run_elastic_release_worker) + + args = parser.parse_args() + if not args.__dict__.get("func"): + print("tell me what to do!") + sys.exit(-1) + args.func(args) + +if __name__ == '__main__': + main() diff --git a/python/tests/entity_helpers.py b/python/tests/entity_helpers.py new file mode 100644 index 00000000..dd6fa00a --- /dev/null +++ b/python/tests/entity_helpers.py @@ -0,0 +1,15 @@ + +import json +import pytest +from fatcat.crossref_importer import FatcatCrossrefImporter +from fatcat.entity_helpers import * + +from crossref import crossref_importer + +def test_elastic_convert(crossref_importer): + with open('tests/files/crossref-works.single.json', 'r') as f: + # not a single line + raw = json.loads(f.read()) + (r, c) = crossref_importer.parse_crossref_dict(raw) + r.state = 'active' + release_elastic_dict(r) |