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-rw-r--r--python/fatcat_tools/importers/common.py60
-rw-r--r--python/fatcat_tools/importers/grobid_metadata.py18
-rw-r--r--python/fatcat_tools/importers/matched.py17
3 files changed, 66 insertions, 29 deletions
diff --git a/python/fatcat_tools/importers/common.py b/python/fatcat_tools/importers/common.py
index 89203a4f..2856b88e 100644
--- a/python/fatcat_tools/importers/common.py
+++ b/python/fatcat_tools/importers/common.py
@@ -47,6 +47,66 @@ def test_clean():
assert clean('<b>a&amp;b</b>') == '<b>a&amp;b</b>'
assert clean('<b>a&amp;b</b>', force_xml=True) == '<b>a&b</b>'
+DOMAIN_REL_MAP = {
+ "archive.org": "repository",
+ "arxiv.org": "repository",
+ "babel.hathitrust.org": "repository",
+ "cds.cern.ch": "repository",
+ "citeseerx.ist.psu.edu": "repository",
+ "deepblue.lib.umich.edu": "repository",
+ "europepmc.org": "repository",
+ "hal.inria.fr": "repository",
+ "scielo.isciii.es": "repository",
+ "www.dtic.mil": "repository",
+ "www.jstage.jst.go.jp": "repository",
+ "www.jstor.org": "repository",
+ "www.ncbi.nlm.nih.gov": "repository",
+ "www.scielo.br": "repository",
+ "www.scielo.cl": "repository",
+ "www.scielo.org.mx": "repository",
+ "zenodo.org": "repository",
+
+ "academic.oup.com": "publisher",
+ "cdn.elifesciences.org": "publisher",
+ "cell.com": "publisher",
+ "dl.acm.org": "publisher",
+ "downloads.hindawi.com": "publisher",
+ "elifesciences.org": "publisher",
+ "iopscience.iop.org": "publisher",
+ "journals.plos.org": "publisher",
+ "link.springer.com": "publisher",
+ "onlinelibrary.wiley.com": "publisher",
+ "works.bepress.com": "publisher",
+ "www.biomedcentral.com": "publisher",
+ "www.cell.com": "publisher",
+ "www.nature.com": "publisher",
+ "www.pnas.org": "publisher",
+ "www.tandfonline.com": "publisher",
+
+ "www.researchgate.net": "social",
+ "academia.edu": "social",
+
+ "wayback.archive-it.org": "webarchive",
+ "web.archive.org": "webarchive",
+ "archive.is": "webarchive",
+}
+
+def make_rel_url(raw_url, default_link_rel="web"):
+ # this is where we map specific domains to rel types, and also filter out
+ # bad domains, invalid URLs, etc
+ rel = default_link_rel
+ for domain, domain_rel in DOMAIN_REL_MAP.items():
+ if "//{}/".format(domain) in raw_url:
+ rel = domain_rel
+ break
+ return (rel, raw_url)
+
+def test_make_rel_url():
+ assert make_rel_url("http://example.com/thing.pdf")[0] == "web"
+ assert make_rel_url("http://example.com/thing.pdf", default_link_rel="jeans")[0] == "jeans"
+ assert make_rel_url("https://web.archive.org/web/*/http://example.com/thing.pdf")[0] == "webarchive"
+ assert make_rel_url("http://cell.com/thing.pdf")[0] == "publisher"
+
class EntityImporter:
"""
Base class for fatcat entity importers.
diff --git a/python/fatcat_tools/importers/grobid_metadata.py b/python/fatcat_tools/importers/grobid_metadata.py
index 9d95fe0b..25f9fa89 100644
--- a/python/fatcat_tools/importers/grobid_metadata.py
+++ b/python/fatcat_tools/importers/grobid_metadata.py
@@ -5,7 +5,7 @@ import json
import base64
import datetime
import fatcat_client
-from .common import EntityImporter, clean
+from .common import EntityImporter, clean, make_rel_url
MAX_ABSTRACT_BYTES=4096
@@ -157,18 +157,6 @@ class GrobidMetadataImporter(EntityImporter):
extra=extra)
return re
- # TODO: make this a common function somewhere
- def make_url(self, raw):
- rel = self.default_link_rel
- # TODO: this is where we could map specific domains to rel types,
- # and also filter out bad domains, invalid URLs, etc
- if "//archive.org/" in raw or "//arxiv.org/" in raw:
- # TODO: special-case the arxiv.org bulk mirror?
- rel = "repository"
- elif "//web.archive.org/" in raw or "//archive.is/" in raw:
- rel = "webarchive"
- return fatcat_client.FileEntityUrls(url=raw, rel=rel)
-
def parse_file_metadata(self, sha1_key, cdx, mimetype, file_size):
sha1 = base64.b16encode(base64.b32decode(sha1_key.replace('sha1:', ''))).decode('ascii').lower()
@@ -189,9 +177,9 @@ class GrobidMetadataImporter(EntityImporter):
original)
fe.urls.append(
fatcat_client.FileEntityUrls(url=wayback, rel="webarchive"))
- original_url = self.make_url(original)
+ original_url = make_rel_url(original, default_link_rel=self.default_link_rel)
if original_url is not None:
- fe.urls.append(original_url)
+ fe.urls.append(fatcat_client.FileEntityUrls(rel=original_url[0], url=original_url[1]))
return fe
diff --git a/python/fatcat_tools/importers/matched.py b/python/fatcat_tools/importers/matched.py
index 2ec6c95d..aca2cc34 100644
--- a/python/fatcat_tools/importers/matched.py
+++ b/python/fatcat_tools/importers/matched.py
@@ -4,7 +4,7 @@ import json
import sqlite3
import itertools
import fatcat_client
-from .common import EntityImporter, clean
+from .common import EntityImporter, clean, make_rel_url
class MatchedImporter(EntityImporter):
@@ -43,17 +43,6 @@ class MatchedImporter(EntityImporter):
self.default_link_rel = kwargs.get("default_link_rel", "web")
self.default_mime = kwargs.get("default_mime", None)
- def make_url(self, raw):
- rel = self.default_link_rel
- # TODO: this is where we could map specific domains to rel types,
- # and also filter out bad domains, invalid URLs, etc
- if "//archive.org/" in raw or "//arxiv.org/" in raw:
- # TODO: special-case the arxiv.org bulk mirror?
- rel = "repository"
- elif "//web.archive.org/" in raw or "//archive.is/" in raw:
- rel = "webarchive"
- return (rel, raw)
-
def want(self, raw_record):
return True
@@ -80,7 +69,7 @@ class MatchedImporter(EntityImporter):
# parse URLs and CDX
urls = set()
for url in obj.get('url', []):
- url = self.make_url(url)
+ url = make_rel_url(url, default_link_rel=self.default_link_rel)
if url != None:
urls.add(url)
for cdx in obj.get('cdx', []):
@@ -89,7 +78,7 @@ class MatchedImporter(EntityImporter):
cdx['dt'],
original)
urls.add(("webarchive", wayback))
- url = self.make_url(original)
+ url = make_rel_url(original, default_link_rel=self.default_link_rel)
if url != None:
urls.add(url)
urls = [fatcat_client.FileEntityUrls(rel, url) for (rel, url) in urls]