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Diffstat (limited to 'python')
| -rw-r--r-- | python/README_import.md | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/python/README_import.md b/python/README_import.md index 11cb0fd8..60f91cf2 100644 --- a/python/README_import.md +++ b/python/README_import.md @@ -1,6 +1,41 @@ +Run in order: + +- ISSN +- ORCID +- Crossref +- Manifest + +Lots of trouble with encoding; always `export LC_ALL=C.UTF-8` + +## Data Sources + +Download the following; uncompress the sqlite file, but **do not** uncompress +the others: + + https://archive.org/download/crossref_doi_dump_201801/crossref-works.2018-01-21.json.xz + https://archive.org/download/ia_papers_manifest_2018-01-25/index/idents_files_urls.sqlite.gz + https://archive.org/download/ia_journal_metadata_explore_2018-04-05/journal_extra_metadata.csv + https://archive.org/download/issn_issnl_mappings/20180216.ISSN-to-ISSN-L.txt + https://archive.org/download/orcid-dump-2017/public_profiles_API-2.0_2017_10_json.tar.gz + +## ISSN + +From CSV file: + + time ./client.py import-issn /srv/datasets/journal_extra_metadata.csv + ## ORCID +Directly from compressed tarball: + + tar xf /srv/datasets/public_profiles_API-2.0_2017_10_json.tar.gz -O | jq -c . | grep '"person":' | time parallel -j12 --pipe --round-robin ./client.py import-orcid - + +Or, from pre-uncompressed tarball: + + tar xf /srv/datasets/public_profiles_API-2.0_2017_10_json.tar.gz -O | jq -c . | rg '"person":' > /srv/datasets/public_profiles_1_2_json.all.json + time parallel --bar --pipepart -j8 -a /srv/datasets/public_profiles_1_2_json.all.json ./client.py import-orcid - + Does not work: ./client.py import-orcid /data/orcid/partial/public_profiles_API-2.0_2017_10_json/3/0000-0001-5115-8623.json @@ -13,6 +48,7 @@ Or for many files: find /data/orcid/partial/public_profiles_API-2.0_2017_10_json/3 -iname '*.json' | parallel --bar jq -c . {} | rg '"person":' | ./client.py import-orcid - +### ORCID Performance for ~9k files: @@ -29,3 +65,13 @@ for ~9k files: sys 0m0.104s => 203/second + +## Crossref + +From compressed: + + xzcat /srv/datasets/crossref-works.2018-01-21.json.xz | time parallel -j12 --round-robin --pipe ./client.py import-crossref - /srv/datasets/20180216.ISSN-to-ISSN-L.txt + +## Manifest + + time ./client.py import-manifest /srv/datasets/idents_files_urls.sqlite |