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-rw-r--r--python/Pipfile12
-rw-r--r--python/Pipfile.lock687
-rw-r--r--python/fatcat_tools/harvest/doi_registrars.py32
-rw-r--r--python/fatcat_tools/importers/chocula.py10
-rw-r--r--python/fatcat_tools/importers/ingest.py19
-rw-r--r--python/fatcat_tools/importers/orcid.py4
-rw-r--r--python/fatcat_tools/importers/pubmed.py92
-rw-r--r--python/fatcat_tools/normal.py38
-rw-r--r--python/fatcat_tools/transforms/ingest.py8
-rw-r--r--python/fatcat_web/forms.py2
-rw-r--r--python/fatcat_web/templates/entity_macros.html4
-rw-r--r--python/fatcat_web/templates/release_view.html18
-rw-r--r--python/tests/files/datacite_api.json1
-rw-r--r--python/tests/files/pubmed_31393839.xml95
-rw-r--r--python/tests/harvest_datacite.py45
-rw-r--r--python/tests/import_pubmed.py7
16 files changed, 707 insertions, 367 deletions
diff --git a/python/Pipfile b/python/Pipfile
index ae261053..dfb87514 100644
--- a/python/Pipfile
+++ b/python/Pipfile
@@ -8,10 +8,10 @@ verify_ssl = true
name = "pypi"
[dev-packages]
-pytest = ">=4"
+pytest = ">=4,<5.0.0"
pytest-pythonpath = "*"
pytest-pylint = "*"
-ipython = "*"
+ipython = "<7.0.0"
responses = ">=0.10"
pytest-cov = "*"
pylint = "*"
@@ -29,7 +29,7 @@ flask-wtf = "*"
Flask-Misaka = "*"
flask-mwoauth = "*"
WTForms = "*"
-loginpass = {ref = 'ed9e527502bd19be6793f88ed71ca0e1764e9034',git = 'https://github.com/authlib/loginpass.git'}
+loginpass = ">=0.4"
requests = ">=2"
raven = {extras = ['flask'],version = "*"}
pykafka = ">=2"
@@ -39,14 +39,16 @@ sickle = "*"
python-snappy = "*"
pymacaroons = "*"
ftfy = "*"
-citeproc-py = "*"
-citeproc-py-styles = "*"
+citeproc-py = ">=0.4"
+citeproc-py-styles = ">=0.1"
bs4 = "*"
python-magic = "*"
pylatexenc = "*"
pygal = "*"
elasticsearch-dsl = ">=6.0.0,<7.0.0"
elasticsearch = ">=6.0.0,<7.0.0"
+langcodes = ">=1.4"
+dateparser = ">=0.7"
[requires]
# Python 3.5 is the bundled (system) version of python for Ubuntu 16.04
diff --git a/python/Pipfile.lock b/python/Pipfile.lock
index 8ced4d88..b6e066b5 100644
--- a/python/Pipfile.lock
+++ b/python/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "7ef50f1c42fdcd59e1016ca4581bf6ab1fe60cd3133417532eddb107dd402c8d"
+ "sha256": "17edea9781496af462798b03388bcf0c86d3924a761168cb5d324dca5916ce46"
},
"pipfile-spec": 6,
"requires": {
@@ -16,13 +16,20 @@
]
},
"default": {
+ "authlib": {
+ "hashes": [
+ "sha256:401a4a184379a6551b79af30243ce1ad56da0a8da5b4925e0be260f07ee40009",
+ "sha256:e9a6a6c5748109bd9ce9f24e71d293156c43bd0d6595bc4e63dd8f5b9e809149"
+ ],
+ "version": "==0.13"
+ },
"beautifulsoup4": {
"hashes": [
- "sha256:034740f6cb549b4e932ae1ab975581e6103ac8f942200a0e9759065984391858",
- "sha256:945065979fb8529dd2f37dbb58f00b661bdbcbebf954f93b32fdf5263ef35348",
- "sha256:ba6d5c59906a85ac23dadfe5c88deaf3e179ef565f4898671253e50a78680718"
+ "sha256:5279c36b4b2ec2cb4298d723791467e3000e5384a43ea0cdf5d45207c7e97169",
+ "sha256:6135db2ba678168c07950f9a16c4031822c6f4aec75a65e0a97bc5ca09789931",
+ "sha256:dcdef580e18a76d54002088602eba453eec38ebbcafafeaabd8cab12b6155d57"
],
- "version": "==4.7.1"
+ "version": "==4.8.1"
},
"blinker": {
"hashes": [
@@ -39,43 +46,48 @@
},
"certifi": {
"hashes": [
- "sha256:046832c04d4e752f37383b628bc601a7ea7211496b4638f6514d0e5b9acc4939",
- "sha256:945e3ba63a0b9f577b1395204e13c3a231f9bc0223888be653286534e5873695"
+ "sha256:017c25db2a153ce562900032d5bc68e9f191e44e9a0f762f373977de9df1fbb3",
+ "sha256:25b64c7da4cd7479594d035c08c2d809eb4aab3a26e5a990ea98cc450c320f1f"
],
- "version": "==2019.6.16"
+ "version": "==2019.11.28"
},
"cffi": {
"hashes": [
- "sha256:041c81822e9f84b1d9c401182e174996f0bae9991f33725d059b771744290774",
- "sha256:046ef9a22f5d3eed06334d01b1e836977eeef500d9b78e9ef693f9380ad0b83d",
- "sha256:066bc4c7895c91812eff46f4b1c285220947d4aa46fa0a2651ff85f2afae9c90",
- "sha256:066c7ff148ae33040c01058662d6752fd73fbc8e64787229ea8498c7d7f4041b",
- "sha256:2444d0c61f03dcd26dbf7600cf64354376ee579acad77aef459e34efcb438c63",
- "sha256:300832850b8f7967e278870c5d51e3819b9aad8f0a2c8dbe39ab11f119237f45",
- "sha256:34c77afe85b6b9e967bd8154e3855e847b70ca42043db6ad17f26899a3df1b25",
- "sha256:46de5fa00f7ac09f020729148ff632819649b3e05a007d286242c4882f7b1dc3",
- "sha256:4aa8ee7ba27c472d429b980c51e714a24f47ca296d53f4d7868075b175866f4b",
- "sha256:4d0004eb4351e35ed950c14c11e734182591465a33e960a4ab5e8d4f04d72647",
- "sha256:4e3d3f31a1e202b0f5a35ba3bc4eb41e2fc2b11c1eff38b362de710bcffb5016",
- "sha256:50bec6d35e6b1aaeb17f7c4e2b9374ebf95a8975d57863546fa83e8d31bdb8c4",
- "sha256:55cad9a6df1e2a1d62063f79d0881a414a906a6962bc160ac968cc03ed3efcfb",
- "sha256:5662ad4e4e84f1eaa8efce5da695c5d2e229c563f9d5ce5b0113f71321bcf753",
- "sha256:59b4dc008f98fc6ee2bb4fd7fc786a8d70000d058c2bbe2698275bc53a8d3fa7",
- "sha256:73e1ffefe05e4ccd7bcea61af76f36077b914f92b76f95ccf00b0c1b9186f3f9",
- "sha256:a1f0fd46eba2d71ce1589f7e50a9e2ffaeb739fb2c11e8192aa2b45d5f6cc41f",
- "sha256:a2e85dc204556657661051ff4bab75a84e968669765c8a2cd425918699c3d0e8",
- "sha256:a5457d47dfff24882a21492e5815f891c0ca35fefae8aa742c6c263dac16ef1f",
- "sha256:a8dccd61d52a8dae4a825cdbb7735da530179fea472903eb871a5513b5abbfdc",
- "sha256:ae61af521ed676cf16ae94f30fe202781a38d7178b6b4ab622e4eec8cefaff42",
- "sha256:b012a5edb48288f77a63dba0840c92d0504aa215612da4541b7b42d849bc83a3",
- "sha256:d2c5cfa536227f57f97c92ac30c8109688ace8fa4ac086d19d0af47d134e2909",
- "sha256:d42b5796e20aacc9d15e66befb7a345454eef794fdb0737d1af593447c6c8f45",
- "sha256:dee54f5d30d775f525894d67b1495625dd9322945e7fee00731952e0368ff42d",
- "sha256:e070535507bd6aa07124258171be2ee8dfc19119c28ca94c9dfb7efd23564512",
- "sha256:e1ff2748c84d97b065cc95429814cdba39bcbd77c9c85c89344b317dc0d9cbff",
- "sha256:ed851c75d1e0e043cbf5ca9a8e1b13c4c90f3fbd863dacb01c0808e2b5204201"
- ],
- "version": "==1.12.3"
+ "sha256:0b49274afc941c626b605fb59b59c3485c17dc776dc3cc7cc14aca74cc19cc42",
+ "sha256:0e3ea92942cb1168e38c05c1d56b0527ce31f1a370f6117f1d490b8dcd6b3a04",
+ "sha256:135f69aecbf4517d5b3d6429207b2dff49c876be724ac0c8bf8e1ea99df3d7e5",
+ "sha256:19db0cdd6e516f13329cba4903368bff9bb5a9331d3410b1b448daaadc495e54",
+ "sha256:2781e9ad0e9d47173c0093321bb5435a9dfae0ed6a762aabafa13108f5f7b2ba",
+ "sha256:291f7c42e21d72144bb1c1b2e825ec60f46d0a7468f5346841860454c7aa8f57",
+ "sha256:2c5e309ec482556397cb21ede0350c5e82f0eb2621de04b2633588d118da4396",
+ "sha256:2e9c80a8c3344a92cb04661115898a9129c074f7ab82011ef4b612f645939f12",
+ "sha256:32a262e2b90ffcfdd97c7a5e24a6012a43c61f1f5a57789ad80af1d26c6acd97",
+ "sha256:3c9fff570f13480b201e9ab69453108f6d98244a7f495e91b6c654a47486ba43",
+ "sha256:415bdc7ca8c1c634a6d7163d43fb0ea885a07e9618a64bda407e04b04333b7db",
+ "sha256:42194f54c11abc8583417a7cf4eaff544ce0de8187abaf5d29029c91b1725ad3",
+ "sha256:4424e42199e86b21fc4db83bd76909a6fc2a2aefb352cb5414833c030f6ed71b",
+ "sha256:4a43c91840bda5f55249413037b7a9b79c90b1184ed504883b72c4df70778579",
+ "sha256:599a1e8ff057ac530c9ad1778293c665cb81a791421f46922d80a86473c13346",
+ "sha256:5c4fae4e9cdd18c82ba3a134be256e98dc0596af1e7285a3d2602c97dcfa5159",
+ "sha256:5ecfa867dea6fabe2a58f03ac9186ea64da1386af2159196da51c4904e11d652",
+ "sha256:62f2578358d3a92e4ab2d830cd1c2049c9c0d0e6d3c58322993cc341bdeac22e",
+ "sha256:6471a82d5abea994e38d2c2abc77164b4f7fbaaf80261cb98394d5793f11b12a",
+ "sha256:6d4f18483d040e18546108eb13b1dfa1000a089bcf8529e30346116ea6240506",
+ "sha256:71a608532ab3bd26223c8d841dde43f3516aa5d2bf37b50ac410bb5e99053e8f",
+ "sha256:74a1d8c85fb6ff0b30fbfa8ad0ac23cd601a138f7509dc617ebc65ef305bb98d",
+ "sha256:7b93a885bb13073afb0aa73ad82059a4c41f4b7d8eb8368980448b52d4c7dc2c",
+ "sha256:7d4751da932caaec419d514eaa4215eaf14b612cff66398dd51129ac22680b20",
+ "sha256:7f627141a26b551bdebbc4855c1157feeef18241b4b8366ed22a5c7d672ef858",
+ "sha256:8169cf44dd8f9071b2b9248c35fc35e8677451c52f795daa2bb4643f32a540bc",
+ "sha256:aa00d66c0fab27373ae44ae26a66a9e43ff2a678bf63a9c7c1a9a4d61172827a",
+ "sha256:ccb032fda0873254380aa2bfad2582aedc2959186cce61e3a17abc1a55ff89c3",
+ "sha256:d754f39e0d1603b5b24a7f8484b22d2904fa551fe865fd0d4c3332f078d20d4e",
+ "sha256:d75c461e20e29afc0aee7172a0950157c704ff0dd51613506bd7d82b718e7410",
+ "sha256:dcd65317dd15bc0451f3e01c80da2216a31916bdcffd6221ca1202d96584aa25",
+ "sha256:e570d3ab32e2c2861c4ebe6ffcad6a8abf9347432a37608fe1fbd157b3f0036b",
+ "sha256:fd43a88e045cf992ed09fa724b5315b790525f2676883a6ea64e3263bae6549d"
+ ],
+ "version": "==1.13.2"
},
"chardet": {
"hashes": [
@@ -109,35 +121,69 @@
},
"confluent-kafka": {
"hashes": [
- "sha256:13d0146850c046b9e3dabbcb60bd7c4f02c7d4754b693266ee5bb0884faea2c7",
- "sha256:1505de9c652f9b841ba600f35e6a7f4cae2e239e9b8255212433756d17c1aeed",
- "sha256:1832373eee96b0ef246c773ec2613c382bf4577f0d42e2ce688e8d35ca373e69",
- "sha256:3001d09e5efa357eb9f3166ef54703166d7b662eb55841b760a346313ca717ee",
- "sha256:31b934aa821e4d6aff06dd260b14c03ca58a532bb160032acff573e2de0a4467",
- "sha256:359d776fb0381147e4c9981676d3907f9dbd12733597a6fec455e5a516728ae2",
- "sha256:472f63ee352a1464ff40325cc3a86aae2685716985bb2c9cad7e574f4203d664",
- "sha256:53ec15b8b76109489c77c0fe3d2f5ff71398cef2db74053c4818f6667a14471d",
- "sha256:6299420c462b274095d4624cf246dc90e49d6d3c1acd8b7222d39eb407476301",
- "sha256:8a497aee87d01891090c9c59ee760387bc41c718a358dadc926a6cae36dfa4fa",
- "sha256:8bd48e88b2d9ba42b58e8c5c1a266a4a7945757d1ae1c2bad3c0fbdf7b52c5e5",
- "sha256:92684d50215c111025ebb40c813f695fd9df69f763f04e9b25fc4fd67e5c0d06",
- "sha256:957417782592136c91c81d7161be8c6fc334f65d229a672d18c4cc85a0a09532",
- "sha256:a41eda5c84e153e0ec8d854c064ebe242a8a6993f9069f6ae83dfd5f9dda1ac6",
- "sha256:b4e5b7f5f597d4a40e0148e1fe509ab800231542ce7e8765265e8c251e6e3983",
- "sha256:c41d12f4e1deb54e1fa6e40260d95aa7b1c1ebfa4bbddb8a03f06fde3611da71",
- "sha256:c8b75e6e803e1a4346d12f212ead3871f86cf21e4d6b5028e8701f8e9c8f105b",
- "sha256:c8dee478a46a9352224fce1d12756cff6cf50e2684121a118141c7908ae9ed3e",
- "sha256:d072825c0f9dec85ebc5eaa887c324914cb3631c884b35fc3c173663d4222a3a",
- "sha256:d328d11edfe049cbdd6bf0792bcff9a9afce26c25124f198fe0ea1f910b529b3",
- "sha256:d52708474daec030399cf45a6bff55b13d631cdba6cc6546da351f675a901d44",
- "sha256:dd02a60145961957ad293aed30a435de2069024aec134575bea937e50df211b3",
- "sha256:eb900ef15b340a87185412b906cbef2450ab68907b84988a6af7fc8e1b017b6c",
- "sha256:fa5d985e30fbcbccaf8b9b1e52137abfbbe0f913fc1baddb96b9476824013411",
- "sha256:fb8ba7ddf85c80eb4d2e3c2f1b362793b9f5c78950bc1e93f60423241071fd9b",
- "sha256:ff80ceca738f52d9058d146b7b063092a88281362606e6c917af2a9e60087a3d"
+ "sha256:0efd716da4f03f99d45fbb0d1583c5c8bf1eabc258a883588e3cd6ee06c0facb",
+ "sha256:1f52d6dd04fc81cb22e89a6b579cde83634f9c98218af6fcb794e8e924fc5de0",
+ "sha256:4025ccddbc79443a4e2342de0d770f669558eb737fca2e7851558cd45f78ef78",
+ "sha256:413cc9189ba7560bdc1010bbf3cabdcccfb794262f20aa867778e4059e789e88",
+ "sha256:4194c11fdfa47fe749eabe7f2bcd259e921a457b046df5fe82d11dd519412327",
+ "sha256:4d85e900ee59cba6acbe2ed415f6b8b86c86cca4f1cf0782bca24588cb594f52",
+ "sha256:6095b248c457518d3f83ecb981a819512241b3c3fd7f461f3c55405278ab7825",
+ "sha256:63245ea826238f7c41002c6583e44d07a3a25fbcedd320af4902bb22d17a67ec",
+ "sha256:70a2aa7056143ff30a8259d69327b38838f402fabbcc0699cfd8a7de4123825a",
+ "sha256:77f545e9b143b22d2f11609677aacf7d15855b0166a59634fb1b125ac209b7d7",
+ "sha256:81a1f91a82c65bc3d3d77dbb821b2c91e36ec482a5fc1dec8996c00c4c5bbd3b",
+ "sha256:8469a8780a8d6258d4be08dc882b1d2e8114cfb93ae3836c2841ecfc127efc03",
+ "sha256:910cd945e9684c4d1ee8777258e6f3fa6a54e5ff8d361bba65b03275d0e57f18",
+ "sha256:9350101ca2db756cb9ca2c5ef410a0c19b200267add97a76c2ffa167ac59685a",
+ "sha256:98258fbe75c5d67f0e6103eec1763f9bb713e4258dbdac45ecf8805a975fdd5c",
+ "sha256:99d75d06e79ec7d489cd410717d5ad303dee2a632db5d39f5d20f1ec1a40a23e",
+ "sha256:a1925564bb10556686a9857ce22c222f1d6e66079d3379e23edec0bb3c19703b",
+ "sha256:a4600737ed4ceb6c799319d1d2977c46c00966274d868bcdeba66b655558ee26",
+ "sha256:b96882b342b78b082aeedb56ee3c35d137adeadc26a63188ea36ae46ae1d485c",
+ "sha256:c57c58f812a21fa8ad9f8bac88b4cd026dfe5b4f1fc9353d4fc0186c9b6d558e",
+ "sha256:c72c9223a95b6668a805b175ab39e10a1cb2074e1cfa32a7cace758c744c4238",
+ "sha256:ce45cc45b0dd29fb5a297a7f248f98dc5bde0142d48e07a19140f45906296b14",
+ "sha256:e3bcb44595824dd1c78980bb57804a18ff8de16e257e747bd2724db88acfee25",
+ "sha256:f294a3c3115c2b12a8f0dec6165e1bd427f3a4ca6066a9028e13f9a516c9a162",
+ "sha256:f7a8bb7a5e80776a2dd8d4f4edbef1ebd5fdb2f443f87e95e08f6f7c598c33e1",
+ "sha256:fcb975bc7b26611e3c5c32f3c584ed860703f0496b22c096642ebc36d8cb4f12"
],
"index": "pypi",
- "version": "==1.1.0"
+ "version": "==1.3.0"
+ },
+ "cryptography": {
+ "hashes": [
+ "sha256:02079a6addc7b5140ba0825f542c0869ff4df9a69c360e339ecead5baefa843c",
+ "sha256:1df22371fbf2004c6f64e927668734070a8953362cd8370ddd336774d6743595",
+ "sha256:369d2346db5934345787451504853ad9d342d7f721ae82d098083e1f49a582ad",
+ "sha256:3cda1f0ed8747339bbdf71b9f38ca74c7b592f24f65cdb3ab3765e4b02871651",
+ "sha256:44ff04138935882fef7c686878e1c8fd80a723161ad6a98da31e14b7553170c2",
+ "sha256:4b1030728872c59687badcca1e225a9103440e467c17d6d1730ab3d2d64bfeff",
+ "sha256:58363dbd966afb4f89b3b11dfb8ff200058fbc3b947507675c19ceb46104b48d",
+ "sha256:6ec280fb24d27e3d97aa731e16207d58bd8ae94ef6eab97249a2afe4ba643d42",
+ "sha256:7270a6c29199adc1297776937a05b59720e8a782531f1f122f2eb8467f9aab4d",
+ "sha256:73fd30c57fa2d0a1d7a49c561c40c2f79c7d6c374cc7750e9ac7c99176f6428e",
+ "sha256:7f09806ed4fbea8f51585231ba742b58cbcfbfe823ea197d8c89a5e433c7e912",
+ "sha256:90df0cc93e1f8d2fba8365fb59a858f51a11a394d64dbf3ef844f783844cc793",
+ "sha256:971221ed40f058f5662a604bd1ae6e4521d84e6cad0b7b170564cc34169c8f13",
+ "sha256:a518c153a2b5ed6b8cc03f7ae79d5ffad7315ad4569b2d5333a13c38d64bd8d7",
+ "sha256:b0de590a8b0979649ebeef8bb9f54394d3a41f66c5584fff4220901739b6b2f0",
+ "sha256:b43f53f29816ba1db8525f006fa6f49292e9b029554b3eb56a189a70f2a40879",
+ "sha256:d31402aad60ed889c7e57934a03477b572a03af7794fa8fb1780f21ea8f6551f",
+ "sha256:de96157ec73458a7f14e3d26f17f8128c959084931e8997b9e655a39c8fde9f9",
+ "sha256:df6b4dca2e11865e6cfbfb708e800efb18370f5a46fd601d3755bc7f85b3a8a2",
+ "sha256:ecadccc7ba52193963c0475ac9f6fa28ac01e01349a2ca48509667ef41ffd2cf",
+ "sha256:fb81c17e0ebe3358486cd8cc3ad78adbae58af12fc2bf2bc0bb84e8090fa5ce8"
+ ],
+ "version": "==2.8"
+ },
+ "dateparser": {
+ "hashes": [
+ "sha256:983d84b5e3861cb0aa240cad07f12899bb10b62328aae188b9007e04ce37d665",
+ "sha256:e1eac8ef28de69a554d5fcdb60b172d526d61924b1a40afbbb08df459a36006b"
+ ],
+ "index": "pypi",
+ "version": "==0.7.2"
},
"elasticsearch": {
"hashes": [
@@ -160,11 +206,11 @@
},
"flask": {
"hashes": [
- "sha256:ad7c6d841e64296b962296c2c2dabc6543752985727af86a975072dea984b6f3",
- "sha256:e7d32475d1de5facaa55e3958bc4ec66d3762076b074296aa50ef8fdc5b9df61"
+ "sha256:13f9f196f330c7c2c5d7a5cf91af894110ca0215ac051b5844701f2bfd934d52",
+ "sha256:45eb5a6fd193d6cf7e0cf5d8a5b31f83d5faae0293695626f539a823e93b13f6"
],
"index": "pypi",
- "version": "==1.0.3"
+ "version": "==1.1.1"
},
"flask-debugtoolbar": {
"hashes": [
@@ -183,6 +229,7 @@
},
"flask-misaka": {
"hashes": [
+ "sha256:bcfdacc0803ccea75d377737e82c83489b2153d922c9d9f9eabc5148d216ed70",
"sha256:d0cfb0efd9e5afacda76defd4a605a68390f4fb1bef283c71534fd3ce0d3efb5",
"sha256:f423c3beb5502742a57330a272f81d53223f6f99d45cc45b03926e3a3034f589"
],
@@ -191,10 +238,10 @@
},
"flask-mwoauth": {
"hashes": [
- "sha256:9ac2c802a2943798b8e72c13362adf1918f060f3deed3efd2c155e1ad680fccd"
+ "sha256:6df2e2448ea9251c61d4142da1aa2cd529e9ce22b440b577b1197912a8969be9"
],
"index": "pypi",
- "version": "==0.3.70"
+ "version": "==0.4.75"
},
"flask-uuid": {
"hashes": [
@@ -213,17 +260,16 @@
},
"ftfy": {
"hashes": [
- "sha256:84a1614190173bb447ac9d581e50185c6aa35b538754b6bedaba0cc0f83d8e80",
- "sha256:fa74757fb7cb444366fa6a79c2feabd40281a44dfbf6eaed492a804764ee26b2"
+ "sha256:6d7509c45e602dec890f0f6ee0623a8b5f50ec1188ac7ab9535e18e572c99bcc"
],
"index": "pypi",
- "version": "==5.5.1"
+ "version": "==5.6"
},
"future": {
"hashes": [
- "sha256:67045236dcfd6816dc439556d009594abf643e5eb48992e36beac09c2ca659b8"
+ "sha256:b1bead90b70cf6ec3f0710ae53a525360fa360d306a86583adc6bf83a4db537d"
],
- "version": "==0.17.1"
+ "version": "==0.18.2"
},
"idna": {
"hashes": [
@@ -241,10 +287,10 @@
},
"jinja2": {
"hashes": [
- "sha256:065c4f02ebe7f7cf559e49ee5a95fb800a9e4528727aec6f24402a5374c65013",
- "sha256:14dd6caf1527abb21f08f86c784eac40853ba93edb79552aa1e4b8aef1b61c7b"
+ "sha256:74320bb91f31270f9551d46522e33af46a80c3d619f4a4bf42b3164d30b5911f",
+ "sha256:9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de"
],
- "version": "==2.10.1"
+ "version": "==2.10.3"
},
"kazoo": {
"hashes": [
@@ -253,38 +299,58 @@
],
"version": "==2.5.0"
},
+ "langcodes": {
+ "hashes": [
+ "sha256:22cff103b6c0f3c9907d9a51c2d634177a50a189672ad16d959a3e2cd48eadab"
+ ],
+ "index": "pypi",
+ "version": "==1.4.1"
+ },
"loginpass": {
- "git": "https://github.com/authlib/loginpass.git",
- "ref": "ed9e527502bd19be6793f88ed71ca0e1764e9034"
+ "hashes": [
+ "sha256:717c87c1870a7e00547fd9d989aea9b22232b2f48826f552d79c34a47f9618c9",
+ "sha256:9a6e6abef23f2fe9fa9c7999dbdf2f82d9be313e47fa71b7f234fd402acc091e"
+ ],
+ "index": "pypi",
+ "version": "==0.4"
},
"lxml": {
"hashes": [
- "sha256:06c7616601430aa140a69f97e3116308fffe0848f543b639a5ec2e8920ae72fd",
- "sha256:177202792f9842374a8077735c69c41a4282183f7851443d2beb8ee310720819",
- "sha256:19317ad721ceb9e39847d11131903931e2794e447d4751ebb0d9236f1b349ff2",
- "sha256:36d206e62f3e5dbaafd4ec692b67157e271f5da7fd925fda8515da675eace50d",
- "sha256:387115b066c797c85f9861a9613abf50046a15aac16759bc92d04f94acfad082",
- "sha256:3ce1c49d4b4a7bc75fb12acb3a6247bb7a91fe420542e6d671ba9187d12a12c2",
- "sha256:4d2a5a7d6b0dbb8c37dab66a8ce09a8761409c044017721c21718659fa3365a1",
- "sha256:58d0a1b33364d1253a88d18df6c0b2676a1746d27c969dc9e32d143a3701dda5",
- "sha256:62a651c618b846b88fdcae0533ec23f185bb322d6c1845733f3123e8980c1d1b",
- "sha256:69ff21064e7debc9b1b1e2eee8c2d686d042d4257186d70b338206a80c5bc5ea",
- "sha256:7060453eba9ba59d821625c6af6a266bd68277dce6577f754d1eb9116c094266",
- "sha256:7d26b36a9c4bce53b9cfe42e67849ae3c5c23558bc08363e53ffd6d94f4ff4d2",
- "sha256:83b427ad2bfa0b9705e02a83d8d607d2c2f01889eb138168e462a3a052c42368",
- "sha256:923d03c84534078386cf50193057aae98fa94cace8ea7580b74754493fda73ad",
- "sha256:b773715609649a1a180025213f67ffdeb5a4878c784293ada300ee95a1f3257b",
- "sha256:baff149c174e9108d4a2fee192c496711be85534eab63adb122f93e70aa35431",
- "sha256:bca9d118b1014b4c2d19319b10a3ebed508ff649396ce1855e1c96528d9b2fa9",
- "sha256:ce580c28845581535dc6000fc7c35fdadf8bea7ccb57d6321b044508e9ba0685",
- "sha256:d34923a569e70224d88e6682490e24c842907ba2c948c5fd26185413cbe0cd96",
- "sha256:dd9f0e531a049d8b35ec5e6c68a37f1ba6ec3a591415e6804cbdf652793d15d7",
- "sha256:ecb805cbfe9102f3fd3d2ef16dfe5ae9e2d7a7dfbba92f4ff1e16ac9784dbfb0",
- "sha256:ede9aad2197a0202caff35d417b671f5f91a3631477441076082a17c94edd846",
- "sha256:ef2d1fc370400e0aa755aab0b20cf4f1d0e934e7fd5244f3dd4869078e4942b9",
- "sha256:f2fec194a49bfaef42a548ee657362af5c7a640da757f6f452a35da7dd9f923c"
- ],
- "version": "==4.3.4"
+ "sha256:00ac0d64949fef6b3693813fe636a2d56d97a5a49b5bbb86e4cc4cc50ebc9ea2",
+ "sha256:0571e607558665ed42e450d7bf0e2941d542c18e117b1ebbf0ba72f287ad841c",
+ "sha256:0e3f04a7615fdac0be5e18b2406529521d6dbdb0167d2a690ee328bef7807487",
+ "sha256:13cf89be53348d1c17b453867da68704802966c433b2bb4fa1f970daadd2ef70",
+ "sha256:217262fcf6a4c2e1c7cb1efa08bd9ebc432502abc6c255c4abab611e8be0d14d",
+ "sha256:223e544828f1955daaf4cefbb4853bc416b2ec3fd56d4f4204a8b17007c21250",
+ "sha256:277cb61fede2f95b9c61912fefb3d43fbd5f18bf18a14fae4911b67984486f5d",
+ "sha256:3213f753e8ae86c396e0e066866e64c6b04618e85c723b32ecb0909885211f74",
+ "sha256:4690984a4dee1033da0af6df0b7a6bde83f74e1c0c870623797cec77964de34d",
+ "sha256:4fcc472ef87f45c429d3b923b925704aa581f875d65bac80f8ab0c3296a63f78",
+ "sha256:61409bd745a265a742f2693e4600e4dbd45cc1daebe1d5fad6fcb22912d44145",
+ "sha256:678f1963f755c5d9f5f6968dded7b245dd1ece8cf53c1aa9d80e6734a8c7f41d",
+ "sha256:6c6d03549d4e2734133badb9ab1c05d9f0ef4bcd31d83e5d2b4747c85cfa21da",
+ "sha256:6e74d5f4d6ecd6942375c52ffcd35f4318a61a02328f6f1bd79fcb4ffedf969e",
+ "sha256:7b4fc7b1ecc987ca7aaf3f4f0e71bbfbd81aaabf87002558f5bc95da3a865bcd",
+ "sha256:7ed386a40e172ddf44c061ad74881d8622f791d9af0b6f5be20023029129bc85",
+ "sha256:8f54f0924d12c47a382c600c880770b5ebfc96c9fd94cf6f6bdc21caf6163ea7",
+ "sha256:ad9b81351fdc236bda538efa6879315448411a81186c836d4b80d6ca8217cdb9",
+ "sha256:bbd00e21ea17f7bcc58dccd13869d68441b32899e89cf6cfa90d624a9198ce85",
+ "sha256:c3c289762cc09735e2a8f8a49571d0e8b4f57ea831ea11558247b5bdea0ac4db",
+ "sha256:cf4650942de5e5685ad308e22bcafbccfe37c54aa7c0e30cd620c2ee5c93d336",
+ "sha256:cfcbc33c9c59c93776aa41ab02e55c288a042211708b72fdb518221cc803abc8",
+ "sha256:e301055deadfedbd80cf94f2f65ff23126b232b0d1fea28f332ce58137bcdb18",
+ "sha256:ebbfe24df7f7b5c6c7620702496b6419f6a9aa2fd7f005eb731cc80d7b4692b9",
+ "sha256:eff69ddbf3ad86375c344339371168640951c302450c5d3e9936e98d6459db06",
+ "sha256:f6ed60a62c5f1c44e789d2cf14009423cb1646b44a43e40a9cf6a21f077678a1"
+ ],
+ "version": "==4.4.2"
+ },
+ "marisa-trie": {
+ "hashes": [
+ "sha256:4419abb6b603c97e863fad994abe57ed247fb12491f4bbacb2d762bd2e8958b6",
+ "sha256:c73bc25d868e8c4ea7aa7f1e19892db07bba2463351269b05340ccfa06eb2baf"
+ ],
+ "version": "==0.7.5"
},
"markupsafe": {
"hashes": [
@@ -327,17 +393,18 @@
},
"mwoauth": {
"hashes": [
- "sha256:8a57a315732733240e9522d3c4e370cbdf2c045d00fe0dab433d6119fa09038f",
- "sha256:ae0d094bd8817b690af5e8c52a113ae229e689fca59303aae0f0fdfb0ca911d1"
+ "sha256:9e0d70a1fa6f452584de1cb853ae6c11f41233549f7839cfb879f99410f6ad46",
+ "sha256:af4e9dcbf397255dc0a31dea7655a9b9e5de312fcfed816e80622437c5cf072d",
+ "sha256:ef3e86ab965848e71162990cb4e9c580408a098df793fc08511e062d12f068d4"
],
- "version": "==0.3.3"
+ "version": "==0.3.7"
},
"oauthlib": {
"hashes": [
- "sha256:0ce32c5d989a1827e3f1148f98b9085ed2370fc939bf524c9c851d8714797298",
- "sha256:3e1e14f6cde7e5475128d30e97edc3bfb4dc857cb884d8714ec161fdbb3b358e"
+ "sha256:bee41cc35fcca6e988463cacc3bcb8a96224f470ca547e697b604cc697b2f889",
+ "sha256:df884cd6cbe20e32633f1db1072e9356f53638e4361bef4e8b03c9127c9328ea"
],
- "version": "==3.0.1"
+ "version": "==3.1.0"
},
"pycparser": {
"hashes": [
@@ -362,6 +429,7 @@
},
"pykafka": {
"hashes": [
+ "sha256:6b075909a52cb0c95325bc16ab797bbcdbb37386652ea460705ed4472ce91459",
"sha256:f0bbd394ae6970042a587c99fe4dc0966e67787249d963d4ce2f810dc9490577"
],
"index": "pypi",
@@ -369,10 +437,10 @@
},
"pylatexenc": {
"hashes": [
- "sha256:ef2d5260c38e2cb4d2829e8b918914a558557820d4f57cb6588a81e827de2bb3"
+ "sha256:68f6de3921c54d09edb23f2e7625f047d3645cf4f341cc89153e466918411e99"
],
"index": "pypi",
- "version": "==1.5"
+ "version": "==2.1"
},
"pymacaroons": {
"hashes": [
@@ -393,6 +461,7 @@
"sha256:30f36a9c70450c7878053fa1344aca0145fd47d845270b43a7ee9192a051bf39",
"sha256:37aa336a317209f1bb099ad177fef0da45be36a2aa664507c5d72015f956c310",
"sha256:4943decfc5b905748f0756fdd99d4f9498d7064815c4cf3643820c9028b711d1",
+ "sha256:53126cd91356342dcae7e209f840212a58dcf1177ad52c1d938d428eebc9fee5",
"sha256:57ef38a65056e7800859e5ba9e6091053cd06e1038983016effaffe0efcd594a",
"sha256:5bd61e9b44c543016ce1f6aef48606280e45f892a928ca7068fba30021e9b786",
"sha256:6482d3017a0c0327a49dddc8bd1074cc730d45db2ccb09c3bac1f8f32d1eb61b",
@@ -401,6 +470,7 @@
"sha256:a39f54ccbcd2757d1d63b0ec00a00980c0b382c62865b61a505163943624ab20",
"sha256:aabb0c5232910a20eec8563503c153a8e78bbf5459490c49ab31f6adf3f3a415",
"sha256:bd4ecb473a96ad0f90c20acba4f0bf0df91a4e03a1f4dd6a4bdc9ca75aa3a715",
+ "sha256:bf459128feb543cfca16a95f8da31e2e65e4c5257d2f3dfa8c0c1031139c9c92",
"sha256:e2da3c13307eac601f3de04887624939aca8ee3c9488a0bb0eca4fb9401fc6b1",
"sha256:f67814c38162f4deb31f68d590771a29d5ae3b1bd64b75cf232308e5c74777e0"
],
@@ -408,11 +478,11 @@
},
"python-dateutil": {
"hashes": [
- "sha256:7e6584c74aeed623791615e26efd690f29817a27c73085b78e4bad02493df2fb",
- "sha256:c89805f6f4d64db21ed966fda138f8a5ed7a4fdbc1a8ee329ce1b74e3c74da9e"
+ "sha256:73ebfe9dbf22e832286dafa60473e4cd239f8592f699aa5adaf10050e6e1823c",
+ "sha256:75bb3f31ea686f1197762692a9ee6a7550b59fc6ca3a1f4b5d7e32fb98e2da2a"
],
"index": "pypi",
- "version": "==2.8.0"
+ "version": "==2.8.1"
},
"python-dotenv": {
"hashes": [
@@ -438,10 +508,14 @@
"index": "pypi",
"version": "==0.5.4"
},
- "raven": {
- "extras": [
- "flask"
+ "pytz": {
+ "hashes": [
+ "sha256:1c557d7d0e871de1f5ccd5833f60fb2550652da6be2693c1e02300743d21500d",
+ "sha256:b02c06db6cf09c12dd25137e563b31700d3b80fcc4ad23abb7a315f2789819be"
],
+ "version": "==2019.3"
+ },
+ "raven": {
"hashes": [
"sha256:3fa6de6efa2493a7c827472e984ce9b020797d0da16f1db67197bcc23c8fae54",
"sha256:44a13f87670836e153951af9a3c80405d36b43097db869a36e92809673692ce4"
@@ -449,6 +523,32 @@
"index": "pypi",
"version": "==6.10.0"
},
+ "regex": {
+ "hashes": [
+ "sha256:0472acc4b6319801c1bc681d838c88ba1446f9ae199e01f6e41091c701fb3d42",
+ "sha256:16709434c4e2332ee8ba26ae339aceb8ab0b24b8398ebd0f52ebc943f45c4fc2",
+ "sha256:223fb63ec8dcab20b3318e93dcec4aee89e98b062934090bf29ffc374d2000a2",
+ "sha256:23c3ebf05d1cd3adb26723fd598e75724e0cdb7d6a35185ac0caf061cc6edb49",
+ "sha256:2404a50fb48badaf214b700f08822b68d93d79200e0aefd9569d0332d21fbfcb",
+ "sha256:2af3a7a16fed6eff85c25da106effa36f61cbbe801d00ade349b53ce7619eb15",
+ "sha256:37e018d3746baf159aedfc9773c3cafacbd10d354ba15484f5cfc8ed9da5748b",
+ "sha256:3c9c2988d02a9238a1975c70e87c6ce94e6f36dd8e372b66f468990cfe077434",
+ "sha256:47298bc8b89d1c747f0f5974aa528fc0b6b17396f1694136a224d51461279d83",
+ "sha256:4eeb0fe936797ae00a085f99802642bfc722b3b4ea557e9e7849cb621ea10c91",
+ "sha256:6881be0218b47ed76db033f252bab3f912dfe7ed1fe7baa9daebf51de08546a0",
+ "sha256:7ac08cee5055f548eed3889e9aaef15fd00172d037949496f1f0b34acb8a7c3e",
+ "sha256:7c5e2efcf079c35ff266c3f3a6708834f88f9fd04a3c16b855e036b2b7b1b543",
+ "sha256:8355eaa64724a0fdb010a1654b77cb3e375dc08b7f592cc4a1c05ac606aa481c",
+ "sha256:999a885f7f5194464238ad5d74b05982acee54002f3aa775d8e0e8c5fb74c06c",
+ "sha256:9fd2f4813eaa3e421e82819d38e5b634d900faff7ae5a80cd89ccff407175e69",
+ "sha256:a2e1e53df7dd27943da2b512895125b33fb20f81862c9fed7b3bab2a1de684d1",
+ "sha256:ab43bc0836820b7900dfffc025b996784aec26ec87dc1df4f95a40398760223f",
+ "sha256:ba449b56fa419fb19bf2a2438adbd2433f27087a6fe115917eaf9cfca684d5b6",
+ "sha256:d3f632cefad2cf247bd845794002585e3772288bfcb0dbac59fdecd32cd38b67",
+ "sha256:d51311496061863caae2cfe120cf1ef37900019b86c89c2d75f0918e0b4b8bf3"
+ ],
+ "version": "==2019.12.19"
+ },
"requests": {
"hashes": [
"sha256:11e007a8a2aa0323f5a921e9e6a2d7e4e67d9877e85773fba9ba6419025cbeb4",
@@ -459,10 +559,11 @@
},
"requests-oauthlib": {
"hashes": [
- "sha256:bd6533330e8748e94bf0b214775fed487d309b8b8fe823dc45641ebcd9a32f57",
- "sha256:d3ed0c8f2e3bbc6b344fa63d6f933745ab394469da38db16bdddb461c7e25140"
+ "sha256:7f71572defaecd16372f9006f33c2ec8c077c3cfa6f5911a9a90202beb513f3d",
+ "sha256:b4261601a71fd721a8bd6d7aa1cc1d6a8a93b4a9f5e96626f8e4d91e8beeaa6a",
+ "sha256:fa6c47b933f01060936d87ae9327fead68768b69c6c9ea2109c48be30f2d4dbc"
],
- "version": "==1.2.0"
+ "version": "==1.3.0"
},
"sickle": {
"hashes": [
@@ -474,30 +575,37 @@
},
"six": {
"hashes": [
- "sha256:3350809f0555b11f552448330d0b52d5f24c91a322ea4a15ef22629740f3761c",
- "sha256:d16a0141ec1a18405cd4ce8b4613101da75da0e9a7aec5bdd4fa804d0e0eba73"
+ "sha256:1f1b7d42e254082a9db6279deae68afb421ceba6158efa6131de7b3003ee93fd",
+ "sha256:30f610279e8b2578cab6db20741130331735c781b56053c59c4076da27f06b66"
],
- "version": "==1.12.0"
+ "version": "==1.13.0"
},
"soupsieve": {
"hashes": [
- "sha256:6898e82ecb03772a0d82bd0d0a10c0d6dcc342f77e0701d0ec4a8271be465ece",
- "sha256:b20eff5e564529711544066d7dc0f7661df41232ae263619dede5059799cdfca"
+ "sha256:bdb0d917b03a1369ce964056fc195cfdff8819c40de04695a80bc813c3cfa1f5",
+ "sha256:e2c1c5dee4a1c36bcb790e0fabd5492d874b8ebd4617622c4f6a731701060dda"
],
- "version": "==1.9.1"
+ "version": "==1.9.5"
},
"tabulate": {
"hashes": [
- "sha256:8af07a39377cee1103a5c8b3330a421c2d99b9141e9cc5ddd2e3263fea416943"
+ "sha256:5470cc6687a091c7042cee89b2946d9235fe9f6d49c193a4ae2ac7bf386737c8"
+ ],
+ "version": "==0.8.6"
+ },
+ "tzlocal": {
+ "hashes": [
+ "sha256:11c9f16e0a633b4b60e1eede97d8a46340d042e67b670b290ca526576e039048",
+ "sha256:949b9dd5ba4be17190a80c0268167d7e6c92c62b30026cf9764caf3e308e5590"
],
- "version": "==0.8.3"
+ "version": "==2.0.0"
},
"urllib3": {
"hashes": [
- "sha256:b246607a25ac80bedac05c6f282e3cdaf3afb65420fd024ac94435cabe6e18d1",
- "sha256:dbe59173209418ae49d485b87d1681aefa36252ee85884c31346debd19463232"
+ "sha256:a8a318824cc77d1fd4b2bec2ded92646630d7fe8619497b142c84a9e6f5a7293",
+ "sha256:f3c5fd51747d450d4dcf6f923c81f78f811aab8205fda64b0aba34a4e48b0745"
],
- "version": "==1.25.3"
+ "version": "==1.25.7"
},
"wcwidth": {
"hashes": [
@@ -508,10 +616,10 @@
},
"werkzeug": {
"hashes": [
- "sha256:865856ebb55c4dcd0630cdd8f3331a1847a819dda7e8c750d3db6f2aa6c0209c",
- "sha256:a0b915f0815982fb2a09161cb8f31708052d0951c3ba433ccc5e1aa276507ca6"
+ "sha256:7280924747b5733b246fe23972186c6b348f9ae29724135a6dfc1e53cea433e7",
+ "sha256:e5f4a1f98b52b18a93da705a7458e55afb26f32bff83ff5d19189f92462d65c4"
],
- "version": "==0.15.4"
+ "version": "==0.16.0"
},
"wtforms": {
"hashes": [
@@ -525,10 +633,10 @@
"develop": {
"astroid": {
"hashes": [
- "sha256:6560e1e1749f68c64a4b5dee4e091fce798d2f0d84ebe638cf0e0585a343acf4",
- "sha256:b65db1bbaac9f9f4d190199bb8680af6f6f84fd3769a5ea883df8a91fe68b4c4"
+ "sha256:71ea07f44df9568a75d0f354c49143a4575d90645e9fead6dfb52c26a85ed13a",
+ "sha256:840947ebfa8b58f318d42301cf8c0a20fd794a33b61cc4638e28e9e61ba32f42"
],
- "version": "==2.2.5"
+ "version": "==2.3.3"
},
"atomicwrites": {
"hashes": [
@@ -539,10 +647,10 @@
},
"attrs": {
"hashes": [
- "sha256:69c0dbf2ed392de1cb5ec704444b08a5ef81680a61cb899dc08127123af36a79",
- "sha256:f0b870f674851ecbfbbbd364d6b5cbdff9dcedbc7f3f5e18a6891057f21fe399"
+ "sha256:08a96c641c3a74e44eb59afb61a24f2cb9f4d7188748e76ba4bb5edfa3cb7d1c",
+ "sha256:f7b7ce16570fe9965acd6d30101a28f62fb4a7f9e926b3bbc9b61f8b04247e72"
],
- "version": "==19.1.0"
+ "version": "==19.3.0"
},
"backcall": {
"hashes": [
@@ -553,10 +661,10 @@
},
"certifi": {
"hashes": [
- "sha256:046832c04d4e752f37383b628bc601a7ea7211496b4638f6514d0e5b9acc4939",
- "sha256:945e3ba63a0b9f577b1395204e13c3a231f9bc0223888be653286534e5873695"
+ "sha256:017c25db2a153ce562900032d5bc68e9f191e44e9a0f762f373977de9df1fbb3",
+ "sha256:25b64c7da4cd7479594d035c08c2d809eb4aab3a26e5a990ea98cc450c320f1f"
],
- "version": "==2019.6.16"
+ "version": "==2019.11.28"
},
"chardet": {
"hashes": [
@@ -567,46 +675,46 @@
},
"coverage": {
"hashes": [
- "sha256:3684fabf6b87a369017756b551cef29e505cb155ddb892a7a29277b978da88b9",
- "sha256:39e088da9b284f1bd17c750ac672103779f7954ce6125fd4382134ac8d152d74",
- "sha256:3c205bc11cc4fcc57b761c2da73b9b72a59f8d5ca89979afb0c1c6f9e53c7390",
- "sha256:465ce53a8c0f3a7950dfb836438442f833cf6663d407f37d8c52fe7b6e56d7e8",
- "sha256:48020e343fc40f72a442c8a1334284620f81295256a6b6ca6d8aa1350c763bbe",
- "sha256:5296fc86ab612ec12394565c500b412a43b328b3907c0d14358950d06fd83baf",
- "sha256:5f61bed2f7d9b6a9ab935150a6b23d7f84b8055524e7be7715b6513f3328138e",
- "sha256:68a43a9f9f83693ce0414d17e019daee7ab3f7113a70c79a3dd4c2f704e4d741",
- "sha256:6b8033d47fe22506856fe450470ccb1d8ba1ffb8463494a15cfc96392a288c09",
- "sha256:7ad7536066b28863e5835e8cfeaa794b7fe352d99a8cded9f43d1161be8e9fbd",
- "sha256:7bacb89ccf4bedb30b277e96e4cc68cd1369ca6841bde7b005191b54d3dd1034",
- "sha256:839dc7c36501254e14331bcb98b27002aa415e4af7ea039d9009409b9d2d5420",
- "sha256:8f9a95b66969cdea53ec992ecea5406c5bd99c9221f539bca1e8406b200ae98c",
- "sha256:932c03d2d565f75961ba1d3cec41ddde00e162c5b46d03f7423edcb807734eab",
- "sha256:988529edadc49039d205e0aa6ce049c5ccda4acb2d6c3c5c550c17e8c02c05ba",
- "sha256:998d7e73548fe395eeb294495a04d38942edb66d1fa61eb70418871bc621227e",
- "sha256:9de60893fb447d1e797f6bf08fdf0dbcda0c1e34c1b06c92bd3a363c0ea8c609",
- "sha256:9e80d45d0c7fcee54e22771db7f1b0b126fb4a6c0a2e5afa72f66827207ff2f2",
- "sha256:a545a3dfe5082dc8e8c3eb7f8a2cf4f2870902ff1860bd99b6198cfd1f9d1f49",
- "sha256:a5d8f29e5ec661143621a8f4de51adfb300d7a476224156a39a392254f70687b",
- "sha256:aca06bfba4759bbdb09bf52ebb15ae20268ee1f6747417837926fae990ebc41d",
- "sha256:bb23b7a6fd666e551a3094ab896a57809e010059540ad20acbeec03a154224ce",
- "sha256:bfd1d0ae7e292105f29d7deaa9d8f2916ed8553ab9d5f39ec65bcf5deadff3f9",
- "sha256:c62ca0a38958f541a73cf86acdab020c2091631c137bd359c4f5bddde7b75fd4",
- "sha256:c709d8bda72cf4cd348ccec2a4881f2c5848fd72903c185f363d361b2737f773",
- "sha256:c968a6aa7e0b56ecbd28531ddf439c2ec103610d3e2bf3b75b813304f8cb7723",
- "sha256:df785d8cb80539d0b55fd47183264b7002077859028dfe3070cf6359bf8b2d9c",
- "sha256:f406628ca51e0ae90ae76ea8398677a921b36f0bd71aab2099dfed08abd0322f",
- "sha256:f46087bbd95ebae244a0eda01a618aff11ec7a069b15a3ef8f6b520db523dcf1",
- "sha256:f8019c5279eb32360ca03e9fac40a12667715546eed5c5eb59eb381f2f501260",
- "sha256:fc5f4d209733750afd2714e9109816a29500718b32dd9a5db01c0cb3a019b96a"
- ],
- "version": "==4.5.3"
+ "sha256:0cd13a6e98c37b510a2d34c8281d5e1a226aaf9b65b7d770ef03c63169965351",
+ "sha256:1a4b6b6a2a3a6612e6361130c2cc3dc4378d8c221752b96167ccbad94b47f3cd",
+ "sha256:2ee55e6dba516ddf6f484aa83ccabbb0adf45a18892204c23486938d12258cde",
+ "sha256:3be5338a2eb4ef03c57f20917e1d12a1fd10e3853fed060b6d6b677cb3745898",
+ "sha256:44b783b02db03c4777d8cf71bae19eadc171a6f2a96777d916b2c30a1eb3d070",
+ "sha256:475bf7c4252af0a56e1abba9606f1e54127cdf122063095c75ab04f6f99cf45e",
+ "sha256:47c81ee687eafc2f1db7f03fbe99aab81330565ebc62fb3b61edfc2216a550c8",
+ "sha256:4a7f8e72b18f2aca288ff02255ce32cc830bc04d993efbc87abf6beddc9e56c0",
+ "sha256:50197163a22fd17f79086e087a787883b3ec9280a509807daf158dfc2a7ded02",
+ "sha256:56b13000acf891f700f5067512b804d1ec8c301d627486c678b903859d07f798",
+ "sha256:79388ae29c896299b3567965dbcd93255f175c17c6c7bca38614d12718c47466",
+ "sha256:79fd5d3d62238c4f583b75d48d53cdae759fe04d4fb18fe8b371d88ad2b6f8be",
+ "sha256:7fe3e2fde2bf1d7ce25ebcd2d3de3650b8d60d9a73ce6dcef36e20191291613d",
+ "sha256:81042a24f67b96e4287774014fa27220d8a4d91af1043389e4d73892efc89ac6",
+ "sha256:81326f1095c53111f8afc95da281e1414185f4a538609a77ca50bdfa39a6c207",
+ "sha256:8873dc0d8f42142ea9f20c27bbdc485190fff93823c6795be661703369e5877d",
+ "sha256:88d2cbcb0a112f47eef71eb95460b6995da18e6f8ca50c264585abc2c473154b",
+ "sha256:91f2491aeab9599956c45a77c5666d323efdec790bfe23fcceafcd91105d585a",
+ "sha256:979daa8655ae5a51e8e7a24e7d34e250ae8309fd9719490df92cbb2fe2b0422b",
+ "sha256:9c871b006c878a890c6e44a5b2f3c6291335324b298c904dc0402ee92ee1f0be",
+ "sha256:a6d092545e5af53e960465f652e00efbf5357adad177b2630d63978d85e46a72",
+ "sha256:b5ed7837b923d1d71c4f587ae1539ccd96bfd6be9788f507dbe94dab5febbb5d",
+ "sha256:ba259f68250f16d2444cbbfaddaa0bb20e1560a4fdaad50bece25c199e6af864",
+ "sha256:be1d89614c6b6c36d7578496dc8625123bda2ff44f224cf8b1c45b810ee7383f",
+ "sha256:c1b030a79749aa8d1f1486885040114ee56933b15ccfc90049ba266e4aa2139f",
+ "sha256:c95bb147fab76f2ecde332d972d8f4138b8f2daee6c466af4ff3b4f29bd4c19e",
+ "sha256:d52c1c2d7e856cecc05aa0526453cb14574f821b7f413cc279b9514750d795c1",
+ "sha256:d609a6d564ad3d327e9509846c2c47f170456344521462b469e5cb39e48ba31c",
+ "sha256:e1bad043c12fb58e8c7d92b3d7f2f49977dcb80a08a6d1e7a5114a11bf819fca",
+ "sha256:e5a675f6829c53c87d79117a8eb656cc4a5f8918185a32fc93ba09778e90f6db",
+ "sha256:fec32646b98baf4a22fdceb08703965bd16dea09051fbeb31a04b5b6e72b846c"
+ ],
+ "version": "==5.0"
},
"decorator": {
"hashes": [
- "sha256:86156361c50488b84a3f148056ea716ca587df2f0de1d34750d35c21312725de",
- "sha256:f069f3a01830ca754ba5258fde2278454a0b5b79e0d7f5c13b3b97e57d4acff6"
+ "sha256:54c38050039232e1db4ad7375cfce6748d7b41c29e95a081c8a6d2c30364a2ce",
+ "sha256:5d19b92a3c8f7f101c8dd86afd86b0f061a8ce4540ab8cd401fa2542756bce6d"
],
- "version": "==4.4.0"
+ "version": "==4.4.1"
},
"idna": {
"hashes": [
@@ -617,18 +725,19 @@
},
"importlib-metadata": {
"hashes": [
- "sha256:6dfd58dfe281e8d240937776065dd3624ad5469c835248219bd16cf2e12dbeb7",
- "sha256:cb6ee23b46173539939964df59d3d72c3e0c1b5d54b84f1d8a7e912fe43612db"
+ "sha256:073a852570f92da5f744a3472af1b61e28e9f78ccf0c9117658dc32b15de7b45",
+ "sha256:d95141fbfa7ef2ec65cfd945e2af7e5a6ddbd7c8d9a25e66ff3be8e3daf9f60f"
],
- "version": "==0.18"
+ "markers": "python_version < '3.8'",
+ "version": "==1.3.0"
},
"ipython": {
"hashes": [
- "sha256:54c5a8aa1eadd269ac210b96923688ccf01ebb2d0f21c18c3c717909583579a8",
- "sha256:e840810029224b56cd0d9e7719dc3b39cf84d577f8ac686547c8ba7a06eeab26"
+ "sha256:007dcd929c14631f83daff35df0147ea51d1af420da303fd078343878bd5fb62",
+ "sha256:b0f2ef9eada4a68ef63ee10b6dde4f35c840035c50fd24265f8052c98947d5a4"
],
"index": "pypi",
- "version": "==7.5.0"
+ "version": "==6.5.0"
},
"ipython-genutils": {
"hashes": [
@@ -639,40 +748,43 @@
},
"isort": {
"hashes": [
- "sha256:c40744b6bc5162bbb39c1257fe298b7a393861d50978b565f3ccd9cb9de0182a",
- "sha256:f57abacd059dc3bd666258d1efb0377510a89777fda3e3274e3c01f7c03ae22d"
+ "sha256:54da7e92468955c4fceacd0c86bd0ec997b0e1ee80d97f67c35a78b719dccab1",
+ "sha256:6e811fcb295968434526407adb8796944f1988c5b65e8139058f2014cbe100fd"
],
- "version": "==4.3.20"
+ "version": "==4.3.21"
},
"jedi": {
"hashes": [
- "sha256:49ccb782651bb6f7009810d17a3316f8867dde31654c750506970742e18b553d",
- "sha256:79d0f6595f3846dffcbe667cc6dc821b96e5baa8add125176c31a3917eb19d58"
+ "sha256:786b6c3d80e2f06fd77162a07fed81b8baa22dde5d62896a790a331d6ac21a27",
+ "sha256:ba859c74fa3c966a22f2aeebe1b74ee27e2a462f56d3f5f7ca4a59af61bfe42e"
],
- "version": "==0.14.0"
+ "version": "==0.15.1"
},
"lazy-object-proxy": {
"hashes": [
- "sha256:159a745e61422217881c4de71f9eafd9d703b93af95618635849fe469a283661",
- "sha256:23f63c0821cc96a23332e45dfaa83266feff8adc72b9bcaef86c202af765244f",
- "sha256:3b11be575475db2e8a6e11215f5aa95b9ec14de658628776e10d96fa0b4dac13",
- "sha256:3f447aff8bc61ca8b42b73304f6a44fa0d915487de144652816f950a3f1ab821",
- "sha256:4ba73f6089cd9b9478bc0a4fa807b47dbdb8fad1d8f31a0f0a5dbf26a4527a71",
- "sha256:4f53eadd9932055eac465bd3ca1bd610e4d7141e1278012bd1f28646aebc1d0e",
- "sha256:64483bd7154580158ea90de5b8e5e6fc29a16a9b4db24f10193f0c1ae3f9d1ea",
- "sha256:6f72d42b0d04bfee2397aa1862262654b56922c20a9bb66bb76b6f0e5e4f9229",
- "sha256:7c7f1ec07b227bdc561299fa2328e85000f90179a2f44ea30579d38e037cb3d4",
- "sha256:7c8b1ba1e15c10b13cad4171cfa77f5bb5ec2580abc5a353907780805ebe158e",
- "sha256:8559b94b823f85342e10d3d9ca4ba5478168e1ac5658a8a2f18c991ba9c52c20",
- "sha256:a262c7dfb046f00e12a2bdd1bafaed2408114a89ac414b0af8755c696eb3fc16",
- "sha256:acce4e3267610c4fdb6632b3886fe3f2f7dd641158a843cf6b6a68e4ce81477b",
- "sha256:be089bb6b83fac7f29d357b2dc4cf2b8eb8d98fe9d9ff89f9ea6012970a853c7",
- "sha256:bfab710d859c779f273cc48fb86af38d6e9210f38287df0069a63e40b45a2f5c",
- "sha256:c10d29019927301d524a22ced72706380de7cfc50f767217485a912b4c8bd82a",
- "sha256:dd6e2b598849b3d7aee2295ac765a578879830fb8966f70be8cd472e6069932e",
- "sha256:e408f1eacc0a68fed0c08da45f31d0ebb38079f043328dce69ff133b95c29dc1"
- ],
- "version": "==1.4.1"
+ "sha256:0c4b206227a8097f05c4dbdd323c50edf81f15db3b8dc064d08c62d37e1a504d",
+ "sha256:194d092e6f246b906e8f70884e620e459fc54db3259e60cf69a4d66c3fda3449",
+ "sha256:1be7e4c9f96948003609aa6c974ae59830a6baecc5376c25c92d7d697e684c08",
+ "sha256:4677f594e474c91da97f489fea5b7daa17b5517190899cf213697e48d3902f5a",
+ "sha256:48dab84ebd4831077b150572aec802f303117c8cc5c871e182447281ebf3ac50",
+ "sha256:5541cada25cd173702dbd99f8e22434105456314462326f06dba3e180f203dfd",
+ "sha256:59f79fef100b09564bc2df42ea2d8d21a64fdcda64979c0fa3db7bdaabaf6239",
+ "sha256:8d859b89baf8ef7f8bc6b00aa20316483d67f0b1cbf422f5b4dc56701c8f2ffb",
+ "sha256:9254f4358b9b541e3441b007a0ea0764b9d056afdeafc1a5569eee1cc6c1b9ea",
+ "sha256:9651375199045a358eb6741df3e02a651e0330be090b3bc79f6d0de31a80ec3e",
+ "sha256:97bb5884f6f1cdce0099f86b907aa41c970c3c672ac8b9c8352789e103cf3156",
+ "sha256:9b15f3f4c0f35727d3a0fba4b770b3c4ebbb1fa907dbcc046a1d2799f3edd142",
+ "sha256:a2238e9d1bb71a56cd710611a1614d1194dc10a175c1e08d75e1a7bcc250d442",
+ "sha256:a6ae12d08c0bf9909ce12385803a543bfe99b95fe01e752536a60af2b7797c62",
+ "sha256:ca0a928a3ddbc5725be2dd1cf895ec0a254798915fb3a36af0964a0a4149e3db",
+ "sha256:cb2c7c57005a6804ab66f106ceb8482da55f5314b7fcb06551db1edae4ad1531",
+ "sha256:d74bb8693bf9cf75ac3b47a54d716bbb1a92648d5f781fc799347cfc95952383",
+ "sha256:d945239a5639b3ff35b70a88c5f2f491913eb94871780ebfabb2568bd58afc5a",
+ "sha256:eba7011090323c1dadf18b3b689845fd96a61ba0a1dfbd7f24b921398affc357",
+ "sha256:efa1909120ce98bbb3777e8b6f92237f5d5c8ea6758efea36a473e1d38f7d3e4",
+ "sha256:f3900e8a5de27447acbf900b4750b0ddfd7ec1ea7fbaf11dfa911141bc522af0"
+ ],
+ "version": "==1.4.3"
},
"mccabe": {
"hashes": [
@@ -683,33 +795,33 @@
},
"more-itertools": {
"hashes": [
- "sha256:2112d2ca570bb7c3e53ea1a35cd5df42bb0fd10c45f0fb97178679c3c03d64c7",
- "sha256:c3e4748ba1aad8dba30a4886b0b1a2004f9a863837b8654e7059eebf727afa5a"
+ "sha256:b84b238cce0d9adad5ed87e745778d20a3f8487d0f0cb8b8a586816c7496458d",
+ "sha256:c833ef592a0324bcc6a60e48440da07645063c453880c9477ceb22490aec1564"
],
"markers": "python_version > '2.7'",
- "version": "==7.0.0"
+ "version": "==8.0.2"
},
"packaging": {
"hashes": [
- "sha256:0c98a5d0be38ed775798ece1b9727178c4469d9c3b4ada66e8e6b7849f8732af",
- "sha256:9e1cbf8c12b1f1ce0bb5344b8d7ecf66a6f8a6e91bcb0c84593ed6d3ab5c4ab3"
+ "sha256:28b924174df7a2fa32c1953825ff29c61e2f5e082343165438812f00d3a7fc47",
+ "sha256:d9551545c6d761f3def1677baf08ab2a3ca17c56879e70fecba2fc4dde4ed108"
],
- "version": "==19.0"
+ "version": "==19.2"
},
"parso": {
"hashes": [
- "sha256:5052bb33be034cba784193e74b1cde6ebf29ae8b8c1e4ad94df0c4209bfc4826",
- "sha256:db5881df1643bf3e66c097bfd8935cf03eae73f4cb61ae4433c9ea4fb6613446"
+ "sha256:55cf25df1a35fd88b878715874d2c4dc1ad3f0eebd1e0266a67e1f55efccfbe1",
+ "sha256:5c1f7791de6bd5dbbeac8db0ef5594b36799de198b3f7f7014643b0c5536b9d3"
],
- "version": "==0.5.0"
+ "version": "==0.5.2"
},
"pathlib2": {
"hashes": [
- "sha256:25199318e8cc3c25dcb45cbe084cc061051336d5a9ea2a12448d3d8cb748f742",
- "sha256:5887121d7f7df3603bca2f710e7219f3eca0eb69e0b7cc6e0a022e155ac931a7"
+ "sha256:0ec8205a157c80d7acc301c0b18fbd5d44fe655968f5d947b6ecef5290fc35db",
+ "sha256:6cd9a47b597b37cc57de1c05e56fb1a1c9cc9fab04fe78c29acd090418529868"
],
"markers": "python_version < '3.6'",
- "version": "==2.3.3"
+ "version": "==2.3.5"
},
"pexpect": {
"hashes": [
@@ -735,34 +847,36 @@
},
"pluggy": {
"hashes": [
- "sha256:0825a152ac059776623854c1543d65a4ad408eb3d33ee114dff91e57ec6ae6fc",
- "sha256:b9817417e95936bf75d85d3f8767f7df6cdde751fc40aed3bb3074cbcb77757c"
+ "sha256:15b2acde666561e1298d71b523007ed7364de07029219b604cf808bfa1c765b0",
+ "sha256:966c145cd83c96502c3c3868f50408687b38434af77734af1e9ca461a4081d2d"
],
- "version": "==0.12.0"
+ "version": "==0.13.1"
},
"prompt-toolkit": {
"hashes": [
- "sha256:11adf3389a996a6d45cc277580d0d53e8a5afd281d0c9ec71b28e6f121463780",
- "sha256:2519ad1d8038fd5fc8e770362237ad0364d16a7650fb5724af6997ed5515e3c1",
- "sha256:977c6583ae813a37dc1c2e1b715892461fcbdaa57f6fc62f33a528c4886c8f55"
+ "sha256:37925b37a4af1f6448c76b7606e0285f79f434ad246dda007a27411cca730c6d",
+ "sha256:dd4fca02c8069497ad931a2d09914c6b0d1b50151ce876bc15bde4c747090126",
+ "sha256:f7eec66105baf40eda9ab026cd8b2e251337eea8d111196695d82e0c5f0af852"
],
- "version": "==2.0.9"
+ "version": "==1.0.18"
},
"psycopg2": {
"hashes": [
- "sha256:128d0fa910ada0157bba1cb74a9c5f92bb8a1dca77cf91a31eb274d1f889e001",
- "sha256:227fd46cf9b7255f07687e5bde454d7d67ae39ca77e170097cdef8ebfc30c323",
- "sha256:2315e7f104681d498ccf6fd70b0dba5bce65d60ac92171492bfe228e21dcc242",
- "sha256:4b5417dcd2999db0f5a891d54717cfaee33acc64f4772c4bc574d4ff95ed9d80",
- "sha256:640113ddc943522aaf71294e3f2d24013b0edd659b7820621492c9ebd3a2fb0b",
- "sha256:897a6e838319b4bf648a574afb6cabcb17d0488f8c7195100d48d872419f4457",
- "sha256:8dceca81409898c870e011c71179454962dec152a1a6b86a347f4be74b16d864",
- "sha256:b1b8e41da09a0c3ef0b3d4bb72da0dde2abebe583c1e8462973233fd5ad0235f",
- "sha256:cb407fccc12fc29dc331f2b934913405fa49b9b75af4f3a72d0f50f57ad2ca23",
- "sha256:d3a27550a8185e53b244ad7e79e307594b92fede8617d80200a8cce1fba2c60f",
- "sha256:f0e6b697a975d9d3ccd04135316c947dd82d841067c7800ccf622a8717e98df1"
- ],
- "version": "==2.8.3"
+ "sha256:4212ca404c4445dc5746c0d68db27d2cbfb87b523fe233dc84ecd24062e35677",
+ "sha256:47fc642bf6f427805daf52d6e52619fe0637648fe27017062d898f3bf891419d",
+ "sha256:72772181d9bad1fa349792a1e7384dde56742c14af2b9986013eb94a240f005b",
+ "sha256:8396be6e5ff844282d4d49b81631772f80dabae5658d432202faf101f5283b7c",
+ "sha256:893c11064b347b24ecdd277a094413e1954f8a4e8cdaf7ffbe7ca3db87c103f0",
+ "sha256:92a07dfd4d7c325dd177548c4134052d4842222833576c8391aab6f74038fc3f",
+ "sha256:965c4c93e33e6984d8031f74e51227bd755376a9df6993774fd5b6fb3288b1f4",
+ "sha256:9ab75e0b2820880ae24b7136c4d230383e07db014456a476d096591172569c38",
+ "sha256:b0845e3bdd4aa18dc2f9b6fb78fbd3d9d371ad167fd6d1b7ad01c0a6cdad4fc6",
+ "sha256:dca2d7203f0dfce8ea4b3efd668f8ea65cd2b35112638e488a4c12594015f67b",
+ "sha256:ed686e5926929887e2c7ae0a700e32c6129abb798b4ad2b846e933de21508151",
+ "sha256:ef6df7e14698e79c59c7ee7cf94cd62e5b869db369ed4b1b8f7b729ea825712a",
+ "sha256:f898e5cc0a662a9e12bde6f931263a1bbd350cfb18e1d5336a12927851825bb6"
+ ],
+ "version": "==2.8.4"
},
"ptyprocess": {
"hashes": [
@@ -780,41 +894,41 @@
},
"pygments": {
"hashes": [
- "sha256:71e430bc85c88a430f000ac1d9b331d2407f681d6f6aec95e8bcfbc3df5b0127",
- "sha256:881c4c157e45f30af185c1ffe8d549d48ac9127433f2c380c24b84572ad66297"
+ "sha256:2a3fe295e54a20164a9df49c75fa58526d3be48e14aceba6d6b1e8ac0bfd6f1b",
+ "sha256:98c8aa5a9f778fcd1026a17361ddaf7330d1b7c62ae97c3bb0ae73e0b9b6b0fe"
],
- "version": "==2.4.2"
+ "version": "==2.5.2"
},
"pylint": {
"hashes": [
- "sha256:5d77031694a5fb97ea95e828c8d10fc770a1df6eb3906067aaed42201a8a6a09",
- "sha256:723e3db49555abaf9bf79dc474c6b9e2935ad82230b10c1138a71ea41ac0fff1"
+ "sha256:3db5468ad013380e987410a8d6956226963aed94ecb5f9d3a28acca6d9ac36cd",
+ "sha256:886e6afc935ea2590b462664b161ca9a5e40168ea99e5300935f6591ad467df4"
],
"index": "pypi",
- "version": "==2.3.1"
+ "version": "==2.4.4"
},
"pyparsing": {
"hashes": [
- "sha256:1873c03321fc118f4e9746baf201ff990ceb915f433f23b395f5580d1840cb2a",
- "sha256:9b6323ef4ab914af344ba97510e966d64ba91055d6b9afa6b30799340e89cc03"
+ "sha256:20f995ecd72f2a1f4bf6b072b63b22e2eb457836601e76d6e5dfcd75436acc1f",
+ "sha256:4ca62001be367f01bd3e92ecbb79070272a9d4964dce6a48a82ff0b8bc7e683a"
],
- "version": "==2.4.0"
+ "version": "==2.4.5"
},
"pytest": {
"hashes": [
- "sha256:4a784f1d4f2ef198fe9b7aef793e9fa1a3b2f84e822d9b3a64a181293a572d45",
- "sha256:926855726d8ae8371803f7b2e6ec0a69953d9c6311fa7c3b6c1b929ff92d27da"
+ "sha256:65e92898fb5b61d0a1d7319c3e6dcf97e599e331cfdc2b27f20c0d87ece19239",
+ "sha256:9ea149066f566c943d3122f4b1cf1b577cab73189d11f490b54703fa5fa9df50"
],
"index": "pypi",
- "version": "==4.6.3"
+ "version": "==4.6.7"
},
"pytest-cov": {
"hashes": [
- "sha256:2b097cde81a302e1047331b48cadacf23577e431b61e9c6f49a1170bbe3d3da6",
- "sha256:e00ea4fdde970725482f1f35630d12f074e121a23801aabf2ae154ec6bdd343a"
+ "sha256:cc6742d8bac45070217169f5f72ceee1e0e55b0221f54bcf24845972d3a47f2b",
+ "sha256:cdbdef4f870408ebdbfeb44e63e07eb18bb4619fae852f6e760645fa36172626"
],
"index": "pypi",
- "version": "==2.7.1"
+ "version": "==2.8.1"
},
"pytest-mock": {
"hashes": [
@@ -826,12 +940,12 @@
},
"pytest-pylint": {
"hashes": [
- "sha256:0dcb6cd429281f7493994e65324937bb295ef28f7632c046b45828380f4fe88a",
- "sha256:45d2209b65989c8981289c8e75d0fde8c55e87cef27e97facb49f14773a8d3fb",
- "sha256:7bfbb66fc6dc160193a9e813a7c55e5ae32028f18660deeb90e1cb7e980cbbac"
+ "sha256:8c38ea779e540e27ec4378b0820d906006e09f4ac834defbd886abbf57c7d2ec",
+ "sha256:a4f5e5007f88c2095dcac799e9f7eed3d7e7a2e657596e26093814980ff5fa20",
+ "sha256:a574c246535308f8f6ceac10fa82f8fffffa837071f7985b22515895185700c1"
],
"index": "pypi",
- "version": "==0.14.0"
+ "version": "==0.14.1"
},
"pytest-pythonpath": {
"hashes": [
@@ -850,53 +964,64 @@
},
"responses": {
"hashes": [
- "sha256:502d9c0c8008439cfcdef7e251f507fcfdd503b56e8c0c87c3c3e3393953f790",
- "sha256:97193c0183d63fba8cd3a041c75464e4b09ea0aff6328800d1546598567dde0b"
+ "sha256:caa5f7afd14666f970ea54a4125a639f6491218b45a013c6dc2544f0473ae2b8",
+ "sha256:f602986c715073b6bcb5d68a3225254aa447a1bd06040c66341816267d327721"
],
"index": "pypi",
- "version": "==0.10.6"
+ "version": "==0.10.8"
+ },
+ "simplegeneric": {
+ "hashes": [
+ "sha256:dc972e06094b9af5b855b3df4a646395e43d1c9d0d39ed345b7393560d0b9173"
+ ],
+ "version": "==0.8.1"
},
"six": {
"hashes": [
- "sha256:3350809f0555b11f552448330d0b52d5f24c91a322ea4a15ef22629740f3761c",
- "sha256:d16a0141ec1a18405cd4ce8b4613101da75da0e9a7aec5bdd4fa804d0e0eba73"
+ "sha256:1f1b7d42e254082a9db6279deae68afb421ceba6158efa6131de7b3003ee93fd",
+ "sha256:30f610279e8b2578cab6db20741130331735c781b56053c59c4076da27f06b66"
],
- "version": "==1.12.0"
+ "version": "==1.13.0"
},
"traitlets": {
"hashes": [
- "sha256:9c4bd2d267b7153df9152698efb1050a5d84982d3384a37b2c1f7723ba3e7835",
- "sha256:c6cb5e6f57c5a9bdaa40fa71ce7b4af30298fbab9ece9815b5d995ab6217c7d9"
+ "sha256:70b4c6a1d9019d7b4f6846832288f86998aa3b9207c6821f3578a6a6a467fe44",
+ "sha256:d023ee369ddd2763310e4c3eae1ff649689440d4ae59d7485eb4cfbbe3e359f7"
],
- "version": "==4.3.2"
+ "version": "==4.3.3"
},
"typed-ast": {
"hashes": [
+ "sha256:1170afa46a3799e18b4c977777ce137bb53c7485379d9706af8a59f2ea1aa161",
"sha256:18511a0b3e7922276346bcb47e2ef9f38fb90fd31cb9223eed42c85d1312344e",
"sha256:262c247a82d005e43b5b7f69aff746370538e176131c32dda9cb0f324d27141e",
"sha256:2b907eb046d049bcd9892e3076c7a6456c93a25bebfe554e931620c90e6a25b0",
"sha256:354c16e5babd09f5cb0ee000d54cfa38401d8b8891eefa878ac772f827181a3c",
+ "sha256:48e5b1e71f25cfdef98b013263a88d7145879fbb2d5185f2a0c79fa7ebbeae47",
"sha256:4e0b70c6fc4d010f8107726af5fd37921b666f5b31d9331f0bd24ad9a088e631",
"sha256:630968c5cdee51a11c05a30453f8cd65e0cc1d2ad0d9192819df9978984529f4",
"sha256:66480f95b8167c9c5c5c87f32cf437d585937970f3fc24386f313a4c97b44e34",
"sha256:71211d26ffd12d63a83e079ff258ac9d56a1376a25bc80b1cdcdf601b855b90b",
+ "sha256:7954560051331d003b4e2b3eb822d9dd2e376fa4f6d98fee32f452f52dd6ebb2",
+ "sha256:838997f4310012cf2e1ad3803bce2f3402e9ffb71ded61b5ee22617b3a7f6b6e",
"sha256:95bd11af7eafc16e829af2d3df510cecfd4387f6453355188342c3e79a2ec87a",
"sha256:bc6c7d3fa1325a0c6613512a093bc2a2a15aeec350451cbdf9e1d4bffe3e3233",
"sha256:cc34a6f5b426748a507dd5d1de4c1978f2eb5626d51326e43280941206c209e1",
"sha256:d755f03c1e4a51e9b24d899561fec4ccaf51f210d52abdf8c07ee2849b212a36",
"sha256:d7c45933b1bdfaf9f36c579671fec15d25b06c8398f113dab64c18ed1adda01d",
"sha256:d896919306dd0aa22d0132f62a1b78d11aaf4c9fc5b3410d3c666b818191630a",
+ "sha256:fdc1c9bbf79510b76408840e009ed65958feba92a88833cdceecff93ae8fff66",
"sha256:ffde2fbfad571af120fcbfbbc61c72469e72f550d676c3342492a9dfdefb8f12"
],
- "markers": "implementation_name == 'cpython'",
+ "markers": "implementation_name == 'cpython' and python_version < '3.8'",
"version": "==1.4.0"
},
"urllib3": {
"hashes": [
- "sha256:b246607a25ac80bedac05c6f282e3cdaf3afb65420fd024ac94435cabe6e18d1",
- "sha256:dbe59173209418ae49d485b87d1681aefa36252ee85884c31346debd19463232"
+ "sha256:a8a318824cc77d1fd4b2bec2ded92646630d7fe8619497b142c84a9e6f5a7293",
+ "sha256:f3c5fd51747d450d4dcf6f923c81f78f811aab8205fda64b0aba34a4e48b0745"
],
- "version": "==1.25.3"
+ "version": "==1.25.7"
},
"wcwidth": {
"hashes": [
@@ -913,10 +1038,10 @@
},
"zipp": {
"hashes": [
- "sha256:8c1019c6aad13642199fbe458275ad6a84907634cc9f0989877ccc4a2840139d",
- "sha256:ca943a7e809cc12257001ccfb99e3563da9af99d52f261725e96dfe0f9275bc3"
+ "sha256:3718b1cbcd963c7d4c5511a8240812904164b7f381b647143a89d3b98f9bcd8e",
+ "sha256:f06903e9f1f43b12d371004b4ac7b06ab39a44adc747266928ae6debfa7b3335"
],
- "version": "==0.5.1"
+ "version": "==0.6.0"
}
}
}
diff --git a/python/fatcat_tools/harvest/doi_registrars.py b/python/fatcat_tools/harvest/doi_registrars.py
index 13abb2e6..33f44600 100644
--- a/python/fatcat_tools/harvest/doi_registrars.py
+++ b/python/fatcat_tools/harvest/doi_registrars.py
@@ -8,6 +8,7 @@ import itertools
import datetime
import requests
from confluent_kafka import Producer, KafkaException
+from urllib.parse import urlparse, parse_qs
from fatcat_tools.workers import most_recent_message
from .harvest_common import HarvestState, requests_retry_session
@@ -121,6 +122,10 @@ class HarvestCrossrefWorker:
self.producer.poll(0)
time.sleep(30.0)
continue
+ if http_resp.status_code == 400:
+ print("skipping batch for {}, due to HTTP 400. Marking complete. Related: https://github.com/datacite/datacite/issues/897".format(date_str),
+ file=sys.stderr)
+ break
http_resp.raise_for_status()
resp = http_resp.json()
items = self.extract_items(resp)
@@ -179,7 +184,7 @@ class HarvestDataciteWorker(HarvestCrossrefWorker):
"""
def __init__(self, kafka_hosts, produce_topic, state_topic, contact_email,
- api_host_url="https://api.datacite.org/works",
+ api_host_url="https://api.datacite.org/dois",
start_date=None, end_date=None):
super().__init__(kafka_hosts=kafka_hosts,
produce_topic=produce_topic,
@@ -193,11 +198,13 @@ class HarvestDataciteWorker(HarvestCrossrefWorker):
self.name = "Datacite"
def params(self, date_str):
+ """
+ Dates have to be supplied in 2018-10-27T22:36:30.000Z format.
+ """
return {
- 'from-update-date': date_str,
- 'until-update-date': date_str,
+ 'query': 'updated:[{}T00:00:00.000Z TO {}T23:59:59.999Z]'.format(date_str, date_str),
'page[size]': self.api_batch_size,
- 'page[number]': 1,
+ 'page[cursor]': 1,
}
def extract_items(self, resp):
@@ -210,5 +217,20 @@ class HarvestDataciteWorker(HarvestCrossrefWorker):
return obj['attributes']['doi'].encode('utf-8')
def update_params(self, params, resp):
- params['page[number]'] = resp['meta']['page'] + 1
+ """
+ Using cursor mechanism (https://support.datacite.org/docs/pagination#section-cursor).
+
+ $ curl -sL https://is.gd/cLbE5h | jq -r .links.next
+
+ Example: https://is.gd/cLbE5h
+
+ Further API errors reported:
+ https://github.com/datacite/datacite/issues/897 (HTTP 400)
+ https://github.com/datacite/datacite/issues/898 (HTTP 500)
+ """
+ parsed = urlparse(resp['links']['next'])
+ page_cursor = parse_qs(parsed.query).get('page[cursor]')
+ if not page_cursor:
+ raise ValueError('no page[cursor] in .links.next')
+ params['page[cursor]'] = page_cursor[0]
return params
diff --git a/python/fatcat_tools/importers/chocula.py b/python/fatcat_tools/importers/chocula.py
index 6915ba98..eea50314 100644
--- a/python/fatcat_tools/importers/chocula.py
+++ b/python/fatcat_tools/importers/chocula.py
@@ -128,15 +128,15 @@ class ChoculaImporter(EntityImporter):
existing.publisher = ce.publisher
existing.container_type = existing.container_type or ce.container_type
for k in ('urls', 'webarchive_urls'):
- # update, or clobber/remove any existing values. often
- # want/need to remove dead URLs
+ # update, which might clobber, but won't remove
if ce.extra.get(k):
existing.extra[k] = ce.extra.get(k, [])
- elif k in existing.extra.keys():
- existing.extra.pop(k)
+ # note: in some cases we might *want* to clobber existing (if
+ # all URLs found to be bad), but being conservative for now so
+ # we don't clobber human edits
for k in ('issne', 'issnp', 'country', 'sherpa_romeo', 'ezb',
'szczepanski', 'doaj'):
- # update, but don't remove any existing value
+ # update/overwrite, but don't remove any existing value
if ce.extra.get(k):
existing.extra[k] = ce.extra[k]
if ce.extra.get('languages'):
diff --git a/python/fatcat_tools/importers/ingest.py b/python/fatcat_tools/importers/ingest.py
index c47f0aa7..33c40eff 100644
--- a/python/fatcat_tools/importers/ingest.py
+++ b/python/fatcat_tools/importers/ingest.py
@@ -29,6 +29,7 @@ class IngestFileResultImporter(EntityImporter):
self.ingest_request_source_whitelist = [
'fatcat-changelog',
'fatcat-ingest-container',
+ 'arabesque',
]
if kwargs.get('skip_source_whitelist', False):
self.ingest_request_source_whitelist = []
@@ -55,6 +56,10 @@ class IngestFileResultImporter(EntityImporter):
if self.ingest_request_source_whitelist and source not in self.ingest_request_source_whitelist:
self.counts['skip-ingest_request_source'] += 1
return False
+ if source.startswith('arabesque'):
+ if row['reqeust'].get('link_source') not in ('arxiv', 'pmc'):
+ self.counts['skip-arabesque-source'] += 1
+ return False
if source.startswith('savepapernow'):
# never process async savepapernow requests
self.counts['skip-savepapernow'] += 1
@@ -152,20 +157,22 @@ class IngestFileResultImporter(EntityImporter):
if err.status != 404:
raise err
+ # check for existing edits-in-progress with same file hash
+ for other in self._entity_queue:
+ if other.sha1 == fe.sha1:
+ self.counts['skip-in-queue'] += 1
+ return False
+
if not existing:
return True
+ # the following checks all assume there is an existing item
+
if (fe.release_ids[0] in existing.release_ids) and existing.urls:
# TODO: could still, in theory update with the new URL?
self.counts['exists'] += 1
return False
- # check for existing edits-in-progress with same file hash
- for other in self._entity_queue:
- if other.sha1 == fe.sha1:
- self.counts['skip-in-queue'] += 1
- return False
-
if not self.do_updates:
self.counts['skip-update-disabled'] += 1
return False
diff --git a/python/fatcat_tools/importers/orcid.py b/python/fatcat_tools/importers/orcid.py
index 0a2c8610..554e052f 100644
--- a/python/fatcat_tools/importers/orcid.py
+++ b/python/fatcat_tools/importers/orcid.py
@@ -41,6 +41,10 @@ class OrcidImporter(EntityImporter):
obj is a python dict (parsed from json).
returns a CreatorEntity
"""
+
+ if not 'person' in obj:
+ return False
+
name = obj['person']['name']
if not name:
return None
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py
index 80cf986c..3611a299 100644
--- a/python/fatcat_tools/importers/pubmed.py
+++ b/python/fatcat_tools/importers/pubmed.py
@@ -8,6 +8,7 @@ from bs4 import BeautifulSoup
from bs4.element import NavigableString
import fatcat_openapi_client
+from fatcat_tools.normal import *
from .common import EntityImporter, clean, LANG_MAP_MARC
# from: https://www.ncbi.nlm.nih.gov/books/NBK3827/table/pubmedhelp.T.publication_types/?report=objectonly
@@ -317,7 +318,7 @@ class PubmedImporter(EntityImporter):
TODO: MEDLINE doesn't include PMC/OA license; could include in importer?
"""
- def __init__(self, api, issn_map_file, lookup_refs=False, **kwargs):
+ def __init__(self, api, issn_map_file, lookup_refs=True, **kwargs):
eg_desc = kwargs.get('editgroup_description',
"Automated import of PubMed/MEDLINE XML metadata")
@@ -330,38 +331,9 @@ class PubmedImporter(EntityImporter):
**kwargs)
self.lookup_refs = lookup_refs
- extid_map_file = kwargs.get('extid_map_file')
- self.extid_map_db = None
- if extid_map_file:
- db_uri = "file:{}?mode=ro".format(extid_map_file)
- print("Using external ID map: {}".format(db_uri))
- self.extid_map_db = sqlite3.connect(db_uri, uri=True)
- else:
- print("Not using external ID map")
-
self.create_containers = kwargs.get('create_containers', True)
self.read_issn_map_file(issn_map_file)
- def lookup_ext_ids(self, pmid):
- if self.extid_map_db is None:
- return dict(doi=None, core_id=None, pmid=None, pmcid=None,
- wikidata_qid=None, arxiv_id=None, jstor_id=None)
- row = self.extid_map_db.execute("SELECT core, doi, pmcid, wikidata FROM ids WHERE pmid=? LIMIT 1",
- [pmid]).fetchone()
- if row is None:
- return dict(doi=None, core_id=None, pmid=None, pmcid=None,
- wikidata_qid=None, arxiv_id=None, jstor_id=None)
- row = [str(cell or '') or None for cell in row]
- return dict(
- core_id=row[0],
- doi=row[1],
- pmcid=row[2],
- wikidata_qid=row[3],
- # TODO:
- arxiv_id=None,
- jstor_id=None,
- )
-
def want(self, obj):
return True
@@ -376,20 +348,14 @@ class PubmedImporter(EntityImporter):
identifiers = pubmed.ArticleIdList
pmid = medline.PMID.string.strip()
doi = identifiers.find("ArticleId", IdType="doi")
- if doi:
- doi = doi.string.lower().strip()
- if doi.startswith('doi:'):
- doi = doi[4:]
- if not (doi.startswith('10.') and '/' in doi and doi.split('/')[1]) and len(doi.split()) == 1:
- sys.stderr.write("BOGUS DOI: {}\n".format(doi))
- doi = None
+ if doi and doi.string:
+ doi = clean_doi(doi.string)
+ else:
+ doi = None
pmcid = identifiers.find("ArticleId", IdType="pmc")
if pmcid:
- pmcid = pmcid.string.strip().upper()
- # got a bunch of weird ones like "wst_2018_399" in the 2019 baseline
- if not pmcid.startswith("PMC"):
- pmcid = None
+ pmcid = clean_pmcid(pmcid.string.strip().upper())
release_type = None
pub_types = []
@@ -486,6 +452,8 @@ class PubmedImporter(EntityImporter):
pub_date = medline.Article.find('ArticleDate')
if not pub_date:
pub_date = journal.PubDate
+ if not pub_date:
+ pub_date = journal.JournalIssue.PubDate
release_date = None
release_year = None
if pub_date.Year:
@@ -498,8 +466,17 @@ class PubmedImporter(EntityImporter):
int(pub_date.Day.string))
release_date = release_date.isoformat()
except ValueError as ve:
- sys.stderr.write("bad date, skipping: {}\n".format(ve))
+ print("bad date, skipping: {}".format(ve), file=sys.stderr)
release_date = None
+ elif pub_date.MedlineDate:
+ medline_date = pub_date.MedlineDate.string.strip()
+ if len(medline_date) >= 4 and medline_date[:4].isdigit():
+ release_year = int(medline_date[:4])
+ if release_year < 1300 or release_year > 2040:
+ print("bad medline year, skipping: {}".format(release_year), file=sys.stderr)
+ release_year = None
+ else:
+ print("unparsable medline date, skipping: {}".format(medline_date), file=sys.stderr)
if journal.find("Title"):
container_name = journal.Title.string
@@ -641,19 +618,21 @@ class PubmedImporter(EntityImporter):
if pubmed.ReferenceList:
for ref in pubmed.ReferenceList.find_all('Reference'):
ref_extra = dict()
- ref_pmid = ref.find("ArticleId", IdType="pubmed")
ref_doi = ref.find("ArticleId", IdType="doi")
- ref_release_id = None
+ if ref_doi:
+ ref_doi = clean_doi(ref_doi.string)
+ ref_pmid = ref.find("ArticleId", IdType="pubmed")
if ref_pmid:
- ref_pmid = ref_pmid.string.strip()
- ref_extra['pmid'] = ref_pmid
- if self.lookup_refs:
- ref_release_id = self.lookup_pmid(ref_pmid)
+ ref_pmid = clean_pmid(ref_pmid.string)
+ ref_release_id = None
if ref_doi:
- ref_doi = ref_doi.string.lower().strip()
ref_extra['doi'] = ref_doi
if self.lookup_refs:
ref_release_id = self.lookup_doi(ref_doi)
+ if ref_pmid:
+ ref_extra['pmid'] = ref_pmid
+ if self.lookup_refs:
+ ref_release_id = self.lookup_pmid(ref_pmid)
ref_raw = ref.Citation
if ref_raw:
ref_extra['unstructured'] = ref_raw.string
@@ -668,7 +647,6 @@ class PubmedImporter(EntityImporter):
# extra:
# translation_of
- # subtitle
# aliases
# container_name
# group-title
@@ -729,8 +707,9 @@ class PubmedImporter(EntityImporter):
if err.status != 404:
raise err
if existing and existing.ext_ids.pmid and existing.ext_ids.pmid != re.ext_ids.pmid:
- warnings.warn("PMID/DOI mismatch: release {}, pmid {} != {}".format(
- existing.ident, existing.ext_ids.pmid, re.ext_ids.pmid))
+ warn_str = "PMID/DOI mismatch: release {}, pmid {} != {}".format(
+ existing.ident, existing.ext_ids.pmid, re.ext_ids.pmid)
+ warnings.warn(warn_str)
self.counts['warn-pmid-doi-mismatch'] += 1
# don't clobber DOI, but do group together
re.ext_ids.doi = None
@@ -748,6 +727,15 @@ class PubmedImporter(EntityImporter):
existing.ext_ids.pmcid = existing.ext_ids.pmcid or re.ext_ids.pmcid
existing.refs = existing.refs or re.refs
existing.extra['pubmed'] = re.extra['pubmed']
+ # update subtitle in-place first
+ if not existing.subtitle and existing.extra.get('subtitle'):
+ subtitle = existing.extra.pop('subtitle')
+ if type(subtitle) == list:
+ subtitle = subtitle[0]
+ if subtitle:
+ existing.subtitle = subtitle
+ if not existing.subtitle:
+ existing.subtitle = re.subtitle
try:
self.api.update_release(self.get_editgroup_id(), existing.ident, existing)
self.counts['update'] += 1
diff --git a/python/fatcat_tools/normal.py b/python/fatcat_tools/normal.py
index 80bcfa5a..a77c5eb0 100644
--- a/python/fatcat_tools/normal.py
+++ b/python/fatcat_tools/normal.py
@@ -19,7 +19,10 @@ def clean_doi(raw):
Returns None if not a valid DOI
"""
+ if not raw:
+ return None
raw = raw.strip()
+ raw = raw.replace('\u2013', '-') # emdash
if len(raw.split()) != 1:
return None
if raw.startswith("doi:"):
@@ -32,6 +35,8 @@ def clean_doi(raw):
raw = raw[8:]
if raw.startswith("dx.doi.org/"):
raw = raw[11:]
+ if raw[7:9] == "//":
+ raw = raw[:8] + raw[9:]
if not raw.startswith("10."):
return None
if not DOI_REGEX.fullmatch(raw):
@@ -40,6 +45,10 @@ def clean_doi(raw):
def test_clean_doi():
assert clean_doi("10.1234/asdf ") == "10.1234/asdf"
+ assert clean_doi("10.1037//0002-9432.72.1.50") == "10.1037/0002-9432.72.1.50"
+ assert clean_doi("10.1037/0002-9432.72.1.50") == "10.1037/0002-9432.72.1.50"
+ assert clean_doi("10.23750/abm.v88i2 -s.6506") == None
+ assert clean_doi("10.17167/mksz.2017.2.129–155") == "10.17167/mksz.2017.2.129-155"
assert clean_doi("http://doi.org/10.1234/asdf ") == "10.1234/asdf"
assert clean_doi("https://dx.doi.org/10.1234/asdf ") == "10.1234/asdf"
assert clean_doi("doi:10.1234/asdf ") == "10.1234/asdf"
@@ -54,6 +63,8 @@ def clean_arxiv_id(raw):
Works with versioned or un-versioned arxiv identifiers.
"""
+ if not raw:
+ return None
raw = raw.strip()
if raw.lower().startswith("arxiv:"):
raw = raw[6:]
@@ -90,7 +101,26 @@ def test_clean_arxiv_id():
assert clean_arxiv_id("0806.v1") == None
assert clean_arxiv_id("08062878v1") == None
+def clean_pmid(raw):
+ if not raw:
+ return None
+ raw = raw.strip()
+ if len(raw.split()) != 1:
+ return None
+ if raw.isdigit():
+ return raw
+ return None
+
+def test_clean_pmid():
+ assert clean_pmid("1234") == "1234"
+ assert clean_pmid("1234 ") == "1234"
+ assert clean_pmid("PMC123") == None
+ assert clean_sha1("qfba3") == None
+ assert clean_sha1("") == None
+
def clean_pmcid(raw):
+ if not raw:
+ return None
raw = raw.strip()
if len(raw.split()) != 1:
return None
@@ -99,6 +129,8 @@ def clean_pmcid(raw):
return None
def clean_sha1(raw):
+ if not raw:
+ return None
raw = raw.strip().lower()
if len(raw.split()) != 1:
return None
@@ -134,6 +166,8 @@ def test_clean_sha256():
ISSN_REGEX = re.compile("^\d{4}-\d{3}[0-9X]$")
def clean_issn(raw):
+ if not raw:
+ return None
raw = raw.strip().upper()
if len(raw) != 9:
return None
@@ -150,6 +184,8 @@ def test_clean_issn():
ISBN13_REGEX = re.compile("^97(?:8|9)-\d{1,5}-\d{1,7}-\d{1,6}-\d$")
def clean_isbn13(raw):
+ if not raw:
+ return None
raw = raw.strip()
if not ISBN13_REGEX.fullmatch(raw):
return None
@@ -164,6 +200,8 @@ def test_clean_isbn13():
ORCID_REGEX = re.compile("^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$")
def clean_orcid(raw):
+ if not raw:
+ return None
raw = raw.strip()
if not ORCID_REGEX.fullmatch(raw):
return None
diff --git a/python/fatcat_tools/transforms/ingest.py b/python/fatcat_tools/transforms/ingest.py
index e08d56b8..d6393753 100644
--- a/python/fatcat_tools/transforms/ingest.py
+++ b/python/fatcat_tools/transforms/ingest.py
@@ -35,12 +35,12 @@ def release_ingest_request(release, oa_only=False, ingest_request_source='fatcat
url = "https://doi.org/{}".format(release.ext_ids.doi)
link_source = "doi"
link_source_id = release.ext_ids.doi
- elif release.ext_ids.pmcid and release.ext_ids.pmid:
+ elif release.ext_ids.pmcid:
# TODO: how to tell if an author manuscript in PMC vs. published?
#url = "https://www.ncbi.nlm.nih.gov/pmc/articles/{}/pdf/".format(release.ext_ids.pmcid)
url = "http://europepmc.org/backend/ptpmcrender.fcgi?accid={}&blobtype=pdf".format(release.ext_ids.pmcid)
- link_source = "pubmed"
- link_source_id = release.ext_ids.pmid
+ link_source = "pmc"
+ link_source_id = release.ext_ids.pmcid
if not url:
return None
@@ -48,7 +48,7 @@ def release_ingest_request(release, oa_only=False, ingest_request_source='fatcat
ext_ids = release.ext_ids.to_dict()
ext_ids = dict([(k, v) for (k, v) in ext_ids.items() if v])
- if oa_only and link_source not in ('arxiv', 'pubmed'):
+ if oa_only and link_source not in ('arxiv', 'pmc'):
es = release_to_elasticsearch(release)
if not es['is_oa']:
return None
diff --git a/python/fatcat_web/forms.py b/python/fatcat_web/forms.py
index 5539cc20..dd322cff 100644
--- a/python/fatcat_web/forms.py
+++ b/python/fatcat_web/forms.py
@@ -394,6 +394,8 @@ class SavePaperNowForm(FlaskForm):
ingest_request = {
'ingest_type': self.ingest_type.data,
'ingest_request_source': ingest_request_source,
+ 'link_source': 'spn',
+ 'link_source_id': release.ident,
'base_url': base_url,
'fatcat': {
'release_ident': release.ident,
diff --git a/python/fatcat_web/templates/entity_macros.html b/python/fatcat_web/templates/entity_macros.html
index 390327bc..df26a738 100644
--- a/python/fatcat_web/templates/entity_macros.html
+++ b/python/fatcat_web/templates/entity_macros.html
@@ -65,7 +65,7 @@
<table class="ui definition single line fixed compact small unstackable table">
<tbody>
{% for (key, value) in extra.items()|sort %}
- {% if key in ("ia", "crossref", "kbart", "arxiv", "jstor", "pubmed") and value is mapping and value %}
+ {% if key in ("ia", "crossref", "datacite", "kbart", "arxiv", "jstor", "pubmed") and value is mapping and value %}
{% for (inner_key, inner_value) in value.items()|sort %}
<tr><td class="three wide right aligned"><code>{{ key }}.{{ inner_key }}</code></td>
<td class="seven wide"><code>{{ inner_value }}</code>
@@ -273,4 +273,4 @@ found.count_returned }} out of {{ found.count_found }} results</i>&nbsp;&nbsp;
</div>
-{%- endmacro %} \ No newline at end of file
+{%- endmacro %}
diff --git a/python/fatcat_web/templates/release_view.html b/python/fatcat_web/templates/release_view.html
index b4e0ba25..83ecd1c8 100644
--- a/python/fatcat_web/templates/release_view.html
+++ b/python/fatcat_web/templates/release_view.html
@@ -405,11 +405,15 @@
<div class="ui segment attached accordion">
<div class="title" style="padding: 0px;"><i class="dropdown icon"></i><b>Lookup Links</b></div>
<div class="content">
- {% if release.container != None and release.container.issnl != None %}
- <a href="http://www.sherpa.ac.uk/romeo/issn/{{ release.container.issnl }}/">SHERPA/RoMEO</a> (journal policies)<br/>
- {% endif %}
{% if release != None and release.ext_ids.doi != None %}
- <a href="https://oadoi.org/{{ release.ext_ids.doi }}">oaDOI/unpaywall</a><br/>
+ <a href="https://oadoi.org/{{ release.ext_ids.doi }}">oaDOI/unpaywall</a> (OA fulltext)<br/>
+ {% endif %}
+ {% if release.ext_ids.doi %}
+ {% if release.extra.datacite %}
+ <a href="https://api.datacite.org/dois/{{ release.ext_ids.doi }}">Datacite Metadata</a> (via API)<br>
+ {% else %}
+ <a href="https://api.crossref.org/v1/works/http://dx.doi.org/{{ release.ext_ids.doi }}">Crossref Metadata</a> (via API)<br>
+ {% endif %}
{% endif %}
{% if release.ext_ids.isbn13 != None %}
<a href="https://openlibrary.org/search?isbn={{ release.ext_ids.isbn13 }}">Open Library</a><br>
@@ -417,12 +421,12 @@
{% else %}
<a href="http://www.worldcat.org/search?qt=worldcat_org_art&q={{ release.title|urlencode }}">Worldcat</a><br>
{% endif %}
- {% if release.ext_ids.doi %}
- <a href="https://api.crossref.org/v1/works/http://dx.doi.org/{{ release.ext_ids.doi }}">Crossref Metadata</a> (via API)<br>
+ {% if release.container != None and release.container.issnl != None %}
+ <a href="http://www.sherpa.ac.uk/romeo/issn/{{ release.container.issnl }}/">SHERPA/RoMEO</a> (journal policies)<br/>
{% endif %}
<a href="https://www.wikidata.org/w/index.php?search={{ release.title|urlencode }}">wikidata.org</a><br>
<a href="https://core.ac.uk/search?q={{ release.title|urlencode }}">CORE.ac.uk</a><br>
- <a href="https://www.semanticscholar.org/search?q={{ release.title|urlencode }}">Semantic Scholar</a> (CS, neuro)<br>
+ <a href="https://www.semanticscholar.org/search?q={{ release.title|urlencode }}">Semantic Scholar</a><br>
<a href="https://scholar.google.com/scholar?q={{ release.title|urlencode }}">Google Scholar</a><br>
</div>
</div>
diff --git a/python/tests/files/datacite_api.json b/python/tests/files/datacite_api.json
new file mode 100644
index 00000000..7852d730
--- /dev/null
+++ b/python/tests/files/datacite_api.json
@@ -0,0 +1 @@
+{"data":[{"id":"10.3204/desy-2014-00864","type":"dois","attributes":{"doi":"10.3204/desy-2014-00864","identifiers":[{"identifier":"https://doi.org/10.3204/desy-2014-00864","identifierType":"DOI"}],"creators":[{"name":"Abdo, A. A.","nameType":"Personal","givenName":"A. A.","familyName":"Abdo","affiliation":[]},{"name":"Ajello, M.","nameType":"Personal","givenName":"M.","familyName":"Ajello","affiliation":[]},{"name":"Allafort, A.","nameType":"Personal","givenName":"A.","familyName":"Allafort","affiliation":[]},{"name":"Baldini, L.","nameType":"Personal","givenName":"L.","familyName":"Baldini","affiliation":[]},{"name":"Ballet, J.","nameType":"Personal","givenName":"J.","familyName":"Ballet","affiliation":[]},{"name":"Barbiellini, G.","nameType":"Personal","givenName":"G.","familyName":"Barbiellini","affiliation":[]},{"name":"Baring, M. G.","nameType":"Personal","givenName":"M. G.","familyName":"Baring","affiliation":[]},{"name":"Bastieri, D.","nameType":"Personal","givenName":"D.","familyName":"Bastieri","affiliation":[]},{"name":"Belfiore, A.","nameType":"Personal","givenName":"A.","familyName":"Belfiore","affiliation":[]},{"name":"Bellazzini, R.","nameType":"Personal","givenName":"R.","familyName":"Bellazzini","affiliation":[]},{"name":"Bhattacharyya, B.","nameType":"Personal","givenName":"B.","familyName":"Bhattacharyya","affiliation":[]},{"name":"Bissaldi, E.","nameType":"Personal","givenName":"E.","familyName":"Bissaldi","affiliation":[]},{"name":"Bloom, E. D.","nameType":"Personal","givenName":"E. D.","familyName":"Bloom","affiliation":[]},{"name":"Bonamente, E.","nameType":"Personal","givenName":"E.","familyName":"Bonamente","affiliation":[]},{"name":"Bottacini, E.","nameType":"Personal","givenName":"E.","familyName":"Bottacini","affiliation":[]},{"name":"Brandt, T. J.","nameType":"Personal","givenName":"T. J.","familyName":"Brandt","affiliation":[]},{"name":"Bregeon, J.","nameType":"Personal","givenName":"J.","familyName":"Bregeon","affiliation":[]},{"name":"Brigida, M.","nameType":"Personal","givenName":"M.","familyName":"Brigida","affiliation":[]},{"name":"Bruel, P.","nameType":"Personal","givenName":"P.","familyName":"Bruel","affiliation":[]},{"name":"Buehler, R.","nameType":"Personal","givenName":"R.","familyName":"Buehler","affiliation":["Deutsches Elektronen-Synchrotron"]},{"name":"Burgay, M.","nameType":"Personal","givenName":"M.","familyName":"Burgay","affiliation":[]},{"name":"Burnett, T. H.","nameType":"Personal","givenName":"T. H.","familyName":"Burnett","affiliation":[]},{"name":"Busetto, G.","nameType":"Personal","givenName":"G.","familyName":"Busetto","affiliation":[]},{"name":"Buson, S.","nameType":"Personal","givenName":"S.","familyName":"Buson","affiliation":[]},{"name":"Caliandro, G. A.","nameType":"Personal","givenName":"G. A.","familyName":"Caliandro","affiliation":[]},{"name":"Cameron, R. A.","nameType":"Personal","givenName":"R. A.","familyName":"Cameron","affiliation":[]},{"name":"Camilo, F.","nameType":"Personal","givenName":"F.","familyName":"Camilo","affiliation":[]},{"name":"Caraveo, P. A.","nameType":"Personal","givenName":"P. A.","familyName":"Caraveo","affiliation":[]},{"name":"Casandjian, J. M.","nameType":"Personal","givenName":"J. M.","familyName":"Casandjian","affiliation":[]},{"name":"Cecchi, C.","nameType":"Personal","givenName":"C.","familyName":"Cecchi","affiliation":[]},{"name":"Çelik, Ö.","nameType":"Personal","givenName":"Ö.","familyName":"Çelik","affiliation":[]},{"name":"Charles, E.","nameType":"Personal","givenName":"E.","familyName":"Charles","affiliation":[]},{"name":"Chaty, S.","nameType":"Personal","givenName":"S.","familyName":"Chaty","affiliation":[]},{"name":"Chaves, R. C. G.","nameType":"Personal","givenName":"R. C. G.","familyName":"Chaves","affiliation":[]},{"name":"Chekhtman, A.","nameType":"Personal","givenName":"A.","familyName":"Chekhtman","affiliation":[]},{"name":"Chen, A. W.","nameType":"Personal","givenName":"A. W.","familyName":"Chen","affiliation":[]},{"name":"Chiang, J.","nameType":"Personal","givenName":"J.","familyName":"Chiang","affiliation":[]},{"name":"Chiaro, G.","nameType":"Personal","givenName":"G.","familyName":"Chiaro","affiliation":[]},{"name":"Ciprini, S.","nameType":"Personal","givenName":"S.","familyName":"Ciprini","affiliation":[]},{"name":"Claus, R.","nameType":"Personal","givenName":"R.","familyName":"Claus","affiliation":[]},{"name":"Cognard, I.","nameType":"Personal","givenName":"I.","familyName":"Cognard","affiliation":[]},{"name":"Cohen-Tanugi, J.","nameType":"Personal","givenName":"J.","familyName":"Cohen-Tanugi","affiliation":[]},{"name":"Cominsky, L. R.","nameType":"Personal","givenName":"L. R.","familyName":"Cominsky","affiliation":[]},{"name":"Conrad, J.","nameType":"Personal","givenName":"J.","familyName":"Conrad","affiliation":[]},{"name":"Cutini, S.","nameType":"Personal","givenName":"S.","familyName":"Cutini","affiliation":[]},{"name":"D'Ammando, F.","nameType":"Personal","givenName":"F.","familyName":"D'Ammando","affiliation":[]},{"name":"De Angelis, A.","nameType":"Personal","givenName":"A.","familyName":"De Angelis","affiliation":[]},{"name":"DeCesar, M. E.","nameType":"Personal","givenName":"M. E.","familyName":"DeCesar","affiliation":[]},{"name":"De Luca, A.","nameType":"Personal","givenName":"A.","familyName":"De Luca","affiliation":[]},{"name":"Den Hartog, P. R.","nameType":"Personal","givenName":"P. R.","familyName":"Den Hartog","affiliation":[]},{"name":"De Palma, F.","nameType":"Personal","givenName":"F.","familyName":"De Palma","affiliation":[]},{"name":"Dermer, C. D.","nameType":"Personal","givenName":"C. 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diff --git a/python/tests/files/pubmed_31393839.xml b/python/tests/files/pubmed_31393839.xml
new file mode 100644
index 00000000..644a02ec
--- /dev/null
+++ b/python/tests/files/pubmed_31393839.xml
@@ -0,0 +1,95 @@
+<PubmedArticle>
+ <MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM">
+ <PMID Version="1">31393839</PMID>
+ <DateCompleted>
+ <Year>2019</Year>
+ <Month>12</Month>
+ <Day>17</Day>
+ </DateCompleted>
+ <DateRevised>
+ <Year>2019</Year>
+ <Month>12</Month>
+ <Day>17</Day>
+ </DateRevised>
+ <Article PubModel="Print">
+ <Journal>
+ <ISSN IssnType="Print">0022-3875</ISSN>
+ <JournalIssue CitedMedium="Print">
+ <Volume>53</Volume>
+ <Issue>6</Issue>
+ <PubDate>
+ <MedlineDate>2019</MedlineDate>
+ </PubDate>
+ </JournalIssue>
+ <Title>Journal of clinical orthodontics : JCO</Title>
+ <ISOAbbreviation>J Clin Orthod</ISOAbbreviation>
+ </Journal>
+ <ArticleTitle>Career-Turning Moments.</ArticleTitle>
+ <Pagination>
+ <MedlinePgn>325</MedlinePgn>
+ </Pagination>
+ <AuthorList CompleteYN="Y">
+ <Author ValidYN="Y">
+ <LastName>Keim</LastName>
+ <ForeName>Robert G</ForeName>
+ <Initials>RG</Initials>
+ <AffiliationInfo>
+ <Affiliation>J Clin Orthod, Greenwood Village, CO.</Affiliation>
+ </AffiliationInfo>
+ </Author>
+ </AuthorList>
+ <Language>eng</Language>
+ <PublicationTypeList>
+ <PublicationType UI="D016428">Journal Article</PublicationType>
+ </PublicationTypeList>
+ </Article>
+ <MedlineJournalInfo>
+ <Country>United States</Country>
+ <MedlineTA>J Clin Orthod</MedlineTA>
+ <NlmUniqueID>0243471</NlmUniqueID>
+ <ISSNLinking>0022-3875</ISSNLinking>
+ </MedlineJournalInfo>
+ <CitationSubset>D</CitationSubset>
+ <MeshHeadingList>
+ <MeshHeading>
+ <DescriptorName UI="D001696" MajorTopicYN="N">Biomechanical Phenomena</DescriptorName>
+ </MeshHeading>
+ <MeshHeading>
+ <DescriptorName UI="D002321" MajorTopicYN="Y">Career Choice</DescriptorName>
+ </MeshHeading>
+ <MeshHeading>
+ <DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
+ </MeshHeading>
+ </MeshHeadingList>
+ </MedlineCitation>
+ <PubmedData>
+ <History>
+ <PubMedPubDate PubStatus="entrez">
+ <Year>2019</Year>
+ <Month>8</Month>
+ <Day>9</Day>
+ <Hour>6</Hour>
+ <Minute>0</Minute>
+ </PubMedPubDate>
+ <PubMedPubDate PubStatus="pubmed">
+ <Year>2019</Year>
+ <Month>8</Month>
+ <Day>9</Day>
+ <Hour>6</Hour>
+ <Minute>0</Minute>
+ </PubMedPubDate>
+ <PubMedPubDate PubStatus="medline">
+ <Year>2019</Year>
+ <Month>12</Month>
+ <Day>18</Day>
+ <Hour>6</Hour>
+ <Minute>0</Minute>
+ </PubMedPubDate>
+ </History>
+ <PublicationStatus>ppublish</PublicationStatus>
+ <ArticleIdList>
+ <ArticleId IdType="pubmed">31393839</ArticleId>
+ </ArticleIdList>
+ </PubmedData>
+</PubmedArticle>
+
diff --git a/python/tests/harvest_datacite.py b/python/tests/harvest_datacite.py
new file mode 100644
index 00000000..926d67ba
--- /dev/null
+++ b/python/tests/harvest_datacite.py
@@ -0,0 +1,45 @@
+
+import json
+import pytest
+import datetime
+import responses
+from fatcat_tools.harvest import *
+
+
+@responses.activate
+def test_datacite_harvest_date(mocker):
+
+ # mock out the harvest state object so it doesn't try to actually connect
+ # to Kafka
+ mocker.patch('fatcat_tools.harvest.harvest_common.HarvestState.initialize_from_kafka')
+
+ # mock day request to crossref API
+ with open('tests/files/datacite_api.json', 'r') as f:
+ crossref_resp = json.loads(f.readline())
+ responses.add(responses.GET, 'https://api.datacite.org/dois',
+ json=crossref_resp, status=200)
+
+ harvester = HarvestDataciteWorker(
+ kafka_hosts="dummy",
+ produce_topic="dummy-produce-topic",
+ state_topic="dummy-state-topic",
+ contact_email="test@fatcat.wiki",
+ )
+
+ harvester.producer = mocker.Mock()
+
+ harvester.fetch_date(datetime.date(2019, 2, 3))
+
+ assert len(responses.calls) == 1
+
+ # ensure email was included in User-Agent
+ assert "mailto:test@fatcat.wiki" in responses.calls[0].request.headers['User-Agent']
+
+ # check that correct date param was passed as expected
+ assert "query=updated%3A%5B2019-02-03T00%3A00%3A00.000Z+TO+2019-02-03T23%3A59%3A59.999Z%5D" in responses.calls[0].request.url
+
+ # check that we published the expected number of DOI objects were published
+ # to the (mock) kafka topic
+ assert harvester.producer.produce.call_count == 1
+ assert harvester.producer.flush.call_count == 1
+ assert harvester.producer.poll.called_once_with(0)
diff --git a/python/tests/import_pubmed.py b/python/tests/import_pubmed.py
index 0d551d02..49609f75 100644
--- a/python/tests/import_pubmed.py
+++ b/python/tests/import_pubmed.py
@@ -119,3 +119,10 @@ def test_pubmed_xml_parse(pubmed_importer):
assert r2.refs[0].extra['unstructured'] == "Microbiology. 2009 Jun;155(Pt 6):1840-6"
assert r2.refs[0].extra['pmid'] == "19383690"
+def test_pubmed_xml_dates(pubmed_importer):
+ with open('tests/files/pubmed_31393839.xml', 'r') as f:
+ soup = BeautifulSoup(f, "xml")
+ r1 = pubmed_importer.parse_record(soup.find_all("PubmedArticle")[0])
+
+ assert r1.release_year == 2019
+
generated by cgit v1.2.3 (git 2.39.1) at 2024-12-03 07:17:05 +0000