diff options
Diffstat (limited to 'python')
| -rwxr-xr-x | python/fatcat_import.py | 10 | ||||
| -rw-r--r-- | python/fatcat_tools/importers/dblp_release.py | 76 |
2 files changed, 73 insertions, 13 deletions
diff --git a/python/fatcat_import.py b/python/fatcat_import.py index 5ee81b92..90b53e5c 100755 --- a/python/fatcat_import.py +++ b/python/fatcat_import.py @@ -275,9 +275,10 @@ def run_doaj_article(args): def run_dblp_release(args): dwi = DblpReleaseImporter(args.api, - args.issn_map_file, + dblp_container_map_file=args.dblp_container_map_file, edit_batch_size=args.batch_size, do_updates=args.do_updates, + dump_json_mode=args.dump_json_mode, ) Bs4XmlLargeFilePusher( dwi, @@ -660,12 +661,15 @@ def main(): sub_dblp_release.add_argument('xml_file', help="File with DBLP XML to import from", default=sys.stdin, type=argparse.FileType('rb')) - sub_dblp_release.add_argument('--issn-map-file', - help="ISSN to ISSN-L mapping file", + sub_dblp_release.add_argument('--dblp-container-map-file', + help="file path to dblp prefix to container_id TSV file", default=None, type=argparse.FileType('r')) sub_dblp_release.add_argument('--do-updates', action='store_true', help="update any pre-existing release entities") + sub_dblp_release.add_argument('--dump-json-mode', + action='store_true', + help="print release entities to stdout instead of importing") sub_dblp_release.set_defaults( func=run_dblp_release, auth_var="FATCAT_AUTH_WORKER_DBLP", diff --git a/python/fatcat_tools/importers/dblp_release.py b/python/fatcat_tools/importers/dblp_release.py index 7e19855f..e4d20370 100644 --- a/python/fatcat_tools/importers/dblp_release.py +++ b/python/fatcat_tools/importers/dblp_release.py @@ -8,22 +8,25 @@ and passed to `parse_record()`. """ import sys # noqa: F401 +import json import warnings import datetime from typing import List, Optional, Any import fatcat_openapi_client + from fatcat_tools.normal import (clean_doi, clean_str, parse_month, clean_orcid, clean_arxiv_id, clean_wikidata_qid, clean_isbn13) from fatcat_tools.importers.common import EntityImporter +from fatcat_tools.transforms import entity_to_dict class DblpReleaseImporter(EntityImporter): def __init__(self, api, - issn_map_file, + dblp_container_map_file=None, **kwargs): eg_desc = kwargs.get( @@ -36,13 +39,13 @@ class DblpReleaseImporter(EntityImporter): # ensure default is to not do updates with this worker (override super() default) kwargs['do_updates'] = kwargs.get("do_updates", False) super().__init__(api, - issn_map_file=issn_map_file, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs) + self.dump_json_mode = kwargs.get("dump_json_mode", False) self.this_year = datetime.datetime.now().year - self.read_issn_map_file(issn_map_file) + self.read_dblp_container_map_file(dblp_container_map_file) ELEMENT_TYPES = [ "article", @@ -55,6 +58,25 @@ class DblpReleaseImporter(EntityImporter): #"data", # no instances in 2020-11 dump ] + def read_dblp_container_map_file(self, dblp_container_map_file) -> None: + self._dblp_container_map = dict() + if not dblp_container_map_file: + print("Not loading a dblp prefix container map file; entities will fail to import", file=sys.stderr) + return + print("Loading dblp prefix container map file...", file=sys.stderr) + for line in dblp_container_map_file: + if line.startswith("dblp_prefix") or len(line) == 0: + continue + (prefix, container_id) = line.split()[0:2] + assert len(container_id) == 26 + self._dblp_container_map[prefix] = container_id + print("Got {} dblp container mappings.".format(len(self._dblp_container_map)), file=sys.stderr) + + def lookup_dblp_prefix(self, prefix): + if not prefix: + return None + return self._dblp_container_map.get(prefix) + def want(self, xml_elem): if not xml_elem.name in self.ELEMENT_TYPES: self.counts['skip-type'] += 1 @@ -175,12 +197,8 @@ class DblpReleaseImporter(EntityImporter): container_id = None if dblp_prefix: - # XXX: container lookup by dblp_prefix, from local something - pass - #container_id = self.lookup_dblp_prefix(dblp_prefix) - #if not container_id: - # self.counts['skip-dblp-prefix-lookup'] += 1 - # return False + container_id = self.lookup_dblp_prefix(dblp_prefix) + # note: we will skip later if couldn't find prefix publisher = clean_str(xml_elem.publisher and xml_elem.publisher.text) volume = clean_str(xml_elem.volume and xml_elem.volume.text) @@ -233,7 +251,7 @@ class DblpReleaseImporter(EntityImporter): dblp_extra['booktitle'] = booktitle if release_year and release_month: - # TODO: schema migration + # TODO: release_month schema migration extra['release_month'] = release_month if dblp_extra: @@ -259,6 +277,17 @@ class DblpReleaseImporter(EntityImporter): extra=extra, ) re = self.biblio_hacks(re) + + if self.dump_json_mode: + re_dict = entity_to_dict(re, api_client=self.api.api_client) + re_dict['_dblp_ee_urls'] = self.dblp_ext_urls(xml_elem) + re_dict['_dblp_prefix'] = dblp_prefix + print(json.dumps(re_dict, sort_keys=True)) + return False + + if not re.container_id: + self.counts["skip-dblp-container-missing"] += 1 + return False return re @staticmethod @@ -442,3 +471,30 @@ class DblpReleaseImporter(EntityImporter): wikidata_qid=wikidata_qid, arxiv=arxiv_id, ) + + def dblp_ext_urls(self, xml_elem: Any) -> List[str]: + """ + Takes a full XML object and returns a list of possible-fulltext URLs. + + Used only in JSON dump mode, with the intent of transforming into + sandcrawler ingest requests. + """ + EXTID_PATTERNS = [ + '://doi.acm.org/', + '://doi.ieeecomputersociety.org/', + 'doi.org/10.', + 'wikidata.org/entity/Q', + '://arxiv.org/abs/', + ] + urls = [] + for ee in xml_elem.find_all('ee'): + url = ee.text + skip = False + for pattern in EXTID_PATTERNS: + if pattern in url: + skip = True + break + if skip: + break + urls.append(url) + return urls |