diff options
Diffstat (limited to 'python/tests')
| -rw-r--r-- | python/tests/crossref.py | 8 | ||||
| -rw-r--r-- | python/tests/files/ISSN-to-ISSN-L.snip.txt | 10 | ||||
| -rw-r--r-- | python/tests/files/crossref-works.2018-01-21.badsample.json | 3 |
3 files changed, 20 insertions, 1 deletions
diff --git a/python/tests/crossref.py b/python/tests/crossref.py index e72f7d02..402195d7 100644 --- a/python/tests/crossref.py +++ b/python/tests/crossref.py @@ -5,7 +5,8 @@ from fatcat.crossref_importer import FatcatCrossrefImporter @pytest.fixture(scope="function") def crossref_importer(): - yield FatcatCrossrefImporter("http://localhost:9411/v0") + with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file: + yield FatcatCrossrefImporter("http://localhost:9411/v0", issn_file) def test_crossref_importer_batch(crossref_importer): with open('tests/files/crossref-works.2018-01-21.badsample.json', 'r') as f: @@ -14,3 +15,8 @@ def test_crossref_importer_batch(crossref_importer): def test_crossref_importer(crossref_importer): with open('tests/files/crossref-works.2018-01-21.badsample.json', 'r') as f: crossref_importer.process_source(f) + +def test_crossref_importer_create(crossref_importer): + crossref_importer.create_containers = True + with open('tests/files/crossref-works.2018-01-21.badsample.json', 'r') as f: + crossref_importer.process_source(f) diff --git a/python/tests/files/ISSN-to-ISSN-L.snip.txt b/python/tests/files/ISSN-to-ISSN-L.snip.txt new file mode 100644 index 00000000..965a49d6 --- /dev/null +++ b/python/tests/files/ISSN-to-ISSN-L.snip.txt @@ -0,0 +1,10 @@ +ISSN ISSN-L +0000-0019 0000-0019 +0000-0027 0000-0027 +0000-0043 0000-0043 +0000-0051 0000-0051 +0000-006X 0000-006X +0000-0078 0000-0078 +0000-0094 0000-0094 +0000-0108 0000-0108 +0000-0140 0000-0140 diff --git a/python/tests/files/crossref-works.2018-01-21.badsample.json b/python/tests/files/crossref-works.2018-01-21.badsample.json index 143adf3e..84271489 100644 --- a/python/tests/files/crossref-works.2018-01-21.badsample.json +++ b/python/tests/files/crossref-works.2018-01-21.badsample.json @@ -8,3 +8,6 @@ { "_id" : { "$oid" : "5a55165c88a035a45bd7e535" }, "indexed" : { "date-parts" : [ [ 2017, 10, 23 ] ], "date-time" : "2017-10-23T14:27:04Z", "timestamp" : { "$numberLong" : "1508768824539" } }, "reference-count" : 6, "publisher" : "Wiley-Blackwell", "issue" : "24", "license" : [ { "URL" : "http://doi.wiley.com/10.1002/tdm_license_1.1", "start" : { "date-parts" : [ [ 2015, 9, 1 ] ], "date-time" : "2015-09-01T00:00:00Z", "timestamp" : { "$numberLong" : "1441065600000" } }, "delay-in-days" : 5722, "content-version" : "tdm" } ], "content-domain" : { "domain" : [], "crossmark-restriction" : false }, "short-container-title" : [ "Rapid Commun. Mass Spectrom." ], "published-print" : { "date-parts" : [ [ 2000, 12, 30 ] ] }, "DOI" : "10.1002/1097-0231(20001230)14:24<2357::aid-rcm168>3.0.co;2-2", "type" : "journal-article", "created" : { "date-parts" : [ [ 2002, 9, 11 ] ], "date-time" : "2002-09-11T00:24:57Z", "timestamp" : { "$numberLong" : "1031703897000" } }, "page" : "2357-2361", "source" : "Crossref", "is-referenced-by-count" : 2, "title" : [ "Electron impact fragmentation mechanisms of some cyclic esters with helical structures" ], "prefix" : "10.1002", "volume" : "14", "author" : [ { "given" : "Jiangtao", "family" : "He", "affiliation" : [] }, { "given" : "Aihua", "family" : "Nie", "affiliation" : [] }, { "given" : "Meiyu", "family" : "He", "affiliation" : [] }, { "given" : "Xiaoran", "family" : "He", "affiliation" : [] }, { "given" : "Zhenpei", "family" : "Yu", "affiliation" : [] }, { "given" : "Xiulin", "family" : "Ye", "affiliation" : [] }, { "given" : "Qiyi", "family" : "Xing", "affiliation" : [] } ], "member" : "311", "published-online" : { "date-parts" : [ [ 2000 ] ] }, "reference" : [ { "key" : "10.1002/1097-0231(20001230)14:24<2357::AID-RCM168>3.0.CO;2-2-BIB1", "author" : "Nie", "volume" : "8", "first-page" : "141", "year" : "1997", "journal-title" : "Chinese Chem. Lett." }, { "key" : "10.1002/1097-0231(20001230)14:24<2357::AID-RCM168>3.0.CO;2-2-BIB2", "author" : "Chenevert", "first-page" : "782", "year" : "1982", "journal-title" : "Synthesis", "DOI" : "10.1055/s-1982-29945", "doi-asserted-by" : "crossref" }, { "key" : "10.1002/1097-0231(20001230)14:24<2357::AID-RCM168>3.0.CO;2-2-BIB3", "author" : "Porter", "first-page" : "296", "year" : "1985", "unstructured" : "Mass Spectrometry of Heterocyclic Compounds (2nd edn). John Wiley & Sons: New York, 1985; 296.", "volume-title" : "Mass Spectrometry of Heterocyclic Compounds" }, { "key" : "10.1002/1097-0231(20001230)14:24<2357::AID-RCM168>3.0.CO;2-2-BIB4", "author" : "Ková??ik", "volume" : "34", "first-page" : "1322", "year" : "1999", "journal-title" : "J. Mass Spectrom.", "DOI" : "10.1002/(SICI)1096-9888(199912)34:12<1322::AID-JMS888>3.0.CO;2-#", "doi-asserted-by" : "crossref" }, { "key" : "10.1002/1097-0231(20001230)14:24<2357::AID-RCM168>3.0.CO;2-2-BIB5", "author" : "Mclafferty", "year" : "1993", "unstructured" : "Interpretation of Mass Spectra (4th edn). University Science Books: Sansalito, CA, 1993.", "volume-title" : "Interpretation of Mass Spectra" }, { "key" : "10.1002/1097-0231(20001230)14:24<2357::AID-RCM168>3.0.CO;2-2-BIB6", "author" : "Williams", "year" : "1996", "unstructured" : "Spectroscopic Methods in Organic Chemistry (5th edn). McGraw-Hill: London, 1996.", "volume-title" : "Spectroscopic Methods in Organic Chemistry" } ], "container-title" : [ "Rapid Communications in Mass Spectrometry" ], "link" : [ { "URL" : "https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2F1097-0231(20001230)14:24%3C2357::AID-RCM168%3E3.0.CO;2-2", "content-type" : "unspecified", "content-version" : "vor", "intended-application" : "text-mining" } ], "deposited" : { "date-parts" : [ [ 2017, 7, 31 ] ], "date-time" : "2017-07-31T21:16:20Z", "timestamp" : { "$numberLong" : "1501535780000" } }, "score" : 1, "issued" : { "date-parts" : [ [ 2000 ] ] }, "references-count" : 6, "URL" : "http://dx.doi.org/10.1002/1097-0231(20001230)14:24<2357::aid-rcm168>3.0.co;2-2", "relation" : { "cites" : [] }, "ISSN" : [ "0951-4198", "1097-0231" ], "issn-type" : [ { "value" : "0951-4198", "type" : "print" }, { "value" : "1097-0231", "type" : "electronic" } ], "subject" : [ "Organic Chemistry", "Analytical Chemistry", "Spectroscopy" ] } { "_id" : { "$oid" : "5a55196988a035a45bda0cb1" }, "indexed" : { "date-parts" : [ [ 2017, 10, 23 ] ], "date-time" : "2017-10-23T14:41:48Z", "timestamp" : { "$numberLong" : "1508769708308" } }, "reference-count" : 44, "publisher" : "Elsevier BV", "issue" : "1", "license" : [ { "URL" : "http://www.elsevier.com/tdm/userlicense/1.0/", "start" : { "date-parts" : [ [ 1998, 11, 1 ] ], "date-time" : "1998-11-01T00:00:00Z", "timestamp" : { "$numberLong" : "909878400000" } }, "delay-in-days" : 0, "content-version" : "tdm" } ], "content-domain" : { "domain" : [], "crossmark-restriction" : false }, "short-container-title" : [ "Toxicology and Applied Pharmacology" ], "published-print" : { "date-parts" : [ [ 1998, 11 ] ] }, "DOI" : "10.1006/taap.1998.8543", "type" : "journal-article", "created" : { "date-parts" : [ [ 2002, 9, 18 ] ], "date-time" : "2002-09-18T22:01:25Z", "timestamp" : { "$numberLong" : "1032386485000" } }, "page" : "102-108", "source" : "Crossref", "is-referenced-by-count" : 44, "title" : [ "Role of CYP1A2 in the Hepatotoxicity of Acetaminophen: Investigations UsingCyp1a2Null Mice" ], "prefix" : "10.1006", "volume" : "153", "author" : [ { "given" : "Robert P.", "family" : "Tonge", "affiliation" : [] }, { "given" : "Edward J.", "family" : "Kelly", "affiliation" : [] }, { "given" : "Sam A.", "family" : "Bruschi", "affiliation" : [] }, { "given" : "Tom", "family" : "Kalhorn", "affiliation" : [] }, { "given" : "David L.", "family" : "Eaton", "affiliation" : [] }, { "given" : "Daniel W.", "family" : "Nebert", "affiliation" : [] }, { "given" : "Sidney D.", "family" : "Nelson", "affiliation" : [] } ], "member" : "78", "container-title" : [ "Toxicology and Applied Pharmacology" ], "link" : [ { "URL" : "http://api.elsevier.com/content/article/PII:S0041008X9898543X?httpAccept=text/xml", "content-type" : "text/xml", "content-version" : "vor", "intended-application" : "text-mining" }, { "URL" : "http://api.elsevier.com/content/article/PII:S0041008X9898543X?httpAccept=text/plain", "content-type" : "text/plain", "content-version" : "vor", "intended-application" : "text-mining" } ], "deposited" : { "date-parts" : [ [ 2017, 6, 14 ] ], "date-time" : "2017-06-14T16:51:33Z", "timestamp" : { "$numberLong" : "1497459093000" } }, "score" : 1, "issued" : { "date-parts" : [ [ 1998, 11 ] ] }, "references-count" : 44, "alternative-id" : [ "S0041008X9898543X" ], "URL" : "http://dx.doi.org/10.1006/taap.1998.8543", "ISSN" : [ "0041-008X" ], "issn-type" : [ { "value" : "0041-008X", "type" : "print" } ], "subject" : [ "Toxicology", "Pharmacology" ] } { "_id" : { "$oid" : "5a55170088a035a45bd8490d" }, "indexed" : { "date-parts" : [ [ 2017, 10, 23 ] ], "date-time" : "2017-10-23T14:30:12Z", "timestamp" : { "$numberLong" : "1508769012416" } }, "reference-count" : 37, "publisher" : "Wiley-Blackwell", "issue" : "2", "license" : [ { "URL" : "http://doi.wiley.com/10.1002/tdm_license_1.1", "start" : { "date-parts" : [ [ 2015, 9, 1 ] ], "date-time" : "2015-09-01T00:00:00Z", "timestamp" : { "$numberLong" : "1441065600000" } }, "delay-in-days" : 5356, "content-version" : "tdm" } ], "content-domain" : { "domain" : [], "crossmark-restriction" : false }, "short-container-title" : [ "Am. J. Ind. Med." ], "published-print" : { "date-parts" : [ [ 2001, 2 ] ] }, "DOI" : "10.1002/1097-0274(200102)39:2<218::aid-ajim1009>3.0.co;2-4", "type" : "journal-article", "created" : { "date-parts" : [ [ 2002, 8, 25 ] ], "date-time" : "2002-08-25T20:41:50Z", "timestamp" : { "$numberLong" : "1030308110000" } }, "page" : "218-226", "source" : "Crossref", "is-referenced-by-count" : 10, "title" : [ "The work environment impact assessment: A methodologic framework for evaluating health-based interventions" ], "prefix" : "10.1002", "volume" : "39", "author" : [ { "given" : "Beth J.", "family" : "Rosenberg", "affiliation" : [] }, { "given" : "Elizabeth M.", "family" : "Barbeau", "affiliation" : [] }, { "given" : "Rafael", "family" : "Moure-Eraso", "affiliation" : [] }, { "given" : "Charles", "family" : "Levenstein", "affiliation" : [] } ], "member" : "311", "published-online" : { "date-parts" : [ [ 2001 ] ] }, "reference" : [ { "key" : "BIB1", "author" : "Barbeau", "year" : "1998", "unstructured" : "1998. Displaced tobacco workers, public health, and tobacco policy: moving beyond jobs versus health. Doctoral thesis, Department of Work Environment, University of Massachusetts, Lowell." }, { "key" : "BIB2", "author" : "Berberian", "volume" : "37", "first-page" : "126", "year" : "1987", "journal-title" : "J Occup Environ Med" }, { "key" : "BIB3", "author" : "Bignami", "volume" : "80", "first-page" : "265", "year" : "1981", "journal-title" : "Mutat Res", "DOI" : "10.1016/0027-5107(81)90099-3", "doi-asserted-by" : "crossref" }, { "key" : "BIB4", "author" : "Britton", "year" : "1989", "unstructured" : "1989. The post-Alar era dawns chilly for apple growers. Boston Globe. Oct. 25, p. 34." }, { "key" : "BIB5", "author" : "Brusick", "year" : "1976", "unstructured" : "1976. Mutagen and oncogen Study on 1,1-dimethylhydrazine. Prepared for the Aerospace Med. Res. Lab., Aeropsace Med. Div. Airforce Systems Command, Wright- Patterson A.F.B., Dayton OH Litton Bionetics, Inc., Kensington, MD. NTIS AD-A035475." }, { "key" : "BIB6", "author" : "Chemical Marketing Reporter", "year" : "1984", "unstructured" : "Chemical Marketing Reporter. 1984. Uniroyal pesticide to be reviewed by EPA: regulatory action prompted by its toxicity. July 23." }, { "key" : "BIB7", "author" : "Chemical Marketing Reporter", "year" : "1989", "unstructured" : "Chemical Marketing Reporter. 1989. Uniroyal pulls apple pesticide from market, citing controversy. June 5." }, { "key" : "BIB8", "year" : "1990", "unstructured" : "Du Pont Chemical Company. 1990. MSDS No. M0000057, p. 2." }, { "key" : "BIB9", "year" : "1993", "unstructured" : "Farm Chemicals Handbook '93. 1993. Willoughby, OH: Meister.", "volume-title" : "Farm Chemicals Handbook '93" }, { "key" : "BIB10", "year" : "1985", "unstructured" : "Farm Chemicals Handbook '85. 1985. 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September." }, { "key" : "BIB35", "author" : "U.S. Department of Agriculture", "year" : "1993", "journal-title" : "New England Agricultural Statistics" }, { "key" : "BIB36", "author" : "Warren", "year" : "1992", "unstructured" : "1992. Unanticipated consequences of banning a chemical: the case of Alar. Unpublished manuscript, Department of Work Environment, University of Massachusetts Lowell." }, { "key" : "BIB37", "author" : "Wood", "year" : "1990", "unstructured" : "1990. Memo to Poverty Lane, West Lebanon, New Hampshire, to members of the Risk Assessment/Risk Management Work Group, Keystone National Policy Dialogue on Food Safety, Oct. 26, 1990, cited in Rosenberg, B. 1996." } ], "container-title" : [ "American Journal of Industrial Medicine" ], "link" : [ { "URL" : "https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2F1097-0274(200102)39:2%3C218::AID-AJIM1009%3E3.0.CO;2-4", "content-type" : "unspecified", "content-version" : "vor", "intended-application" : "text-mining" } ], "deposited" : { "date-parts" : [ [ 2017, 8, 4 ] ], "date-time" : "2017-08-04T20:22:16Z", "timestamp" : { "$numberLong" : "1501878136000" } }, "score" : 1, "issued" : { "date-parts" : [ [ 2001 ] ] }, "references-count" : 37, "URL" : "http://dx.doi.org/10.1002/1097-0274(200102)39:2<218::aid-ajim1009>3.0.co;2-4", "relation" : { "cites" : [] }, "ISSN" : [ "0271-3586", "1097-0274" ], "issn-type" : [ { "value" : "0271-3586", "type" : "print" }, { "value" : "1097-0274", "type" : 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