diff options
Diffstat (limited to 'python/fatcat_tools/importers/pubmed.py')
| -rw-r--r-- | python/fatcat_tools/importers/pubmed.py | 16 |
1 files changed, 13 insertions, 3 deletions
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py index e5d413a7..923c5492 100644 --- a/python/fatcat_tools/importers/pubmed.py +++ b/python/fatcat_tools/importers/pubmed.py @@ -739,9 +739,19 @@ class PubmedImporter(EntityImporter): existing.ext_ids.pmcid = existing.ext_ids.pmcid or re.ext_ids.pmcid existing.refs = existing.refs or re.refs existing.extra['pubmed'] = re.extra['pubmed'] - self.api.update_release(self.get_editgroup_id(), existing.ident, existing) - self.counts['update'] += 1 - return False + try: + self.api.update_release(self.get_editgroup_id(), existing.ident, existing) + self.counts['update'] += 1 + except fatcat_client.rest.ApiException as err: + # there is a code path where we try to update the same release + # twice in a row; if that happens, just skip + # NOTE: API behavior might change in the future? + if "release_edit_editgroup_id_ident_id_key" in err.body: + self.counts['skip-update-conflict'] += 1 + else: + raise err + finally: + return False return True |