diff options
Diffstat (limited to 'python/fatcat_tools/importers/pubmed.py')
| -rw-r--r-- | python/fatcat_tools/importers/pubmed.py | 24 |
1 files changed, 7 insertions, 17 deletions
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py index 41268925..d32fcefa 100644 --- a/python/fatcat_tools/importers/pubmed.py +++ b/python/fatcat_tools/importers/pubmed.py @@ -495,12 +495,12 @@ class PubmedImporter(EntityImporter): release_year = int(pub_date.Year.string) if pub_date.find("Day") and pub_date.find("Month"): try: - release_date = datetime.date( + release_date_date = datetime.date( release_year, MONTH_ABBR_MAP[pub_date.Month.string], int(pub_date.Day.string), ) - release_date = release_date.isoformat() + release_date = release_date_date.isoformat() except ValueError as ve: print("bad date, skipping: {}".format(ve), file=sys.stderr) release_date = None @@ -595,8 +595,6 @@ class PubmedImporter(EntityImporter): ) if abst.content: abstracts.append(abst) - if not abstracts: - abstracts = None ### Contribs contribs = [] @@ -663,8 +661,6 @@ class PubmedImporter(EntityImporter): for i, contrib in enumerate(contribs): if contrib.raw_name != "et al.": contrib.index = i - if not contribs: - contribs = None ### References refs = [] @@ -692,16 +688,12 @@ class PubmedImporter(EntityImporter): ref_raw = ref.Citation if ref_raw: ref_extra["unstructured"] = ref_raw.get_text() - if not ref_extra: - ref_extra = None refs.append( fatcat_openapi_client.ReleaseRef( target_release_id=ref_release_id, - extra=ref_extra, + extra=ref_extra or None, ) ) - if not refs: - refs = None # extra: # translation_of @@ -711,8 +703,6 @@ class PubmedImporter(EntityImporter): # pubmed: retraction refs if extra_pubmed: extra["pubmed"] = extra_pubmed - if not extra: - extra = None title = clean(title) if not title: @@ -739,11 +729,11 @@ class PubmedImporter(EntityImporter): # publisher # not included? language=language, # license_slug # not in MEDLINE - abstracts=abstracts, - contribs=contribs, - refs=refs, + abstracts=abstracts or None, + contribs=contribs or None, + refs=refs or None, container_id=container_id, - extra=extra, + extra=extra or None, ) return re |