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-rw-r--r--python/fatcat_tools/importers/jalc.py52
1 files changed, 0 insertions, 52 deletions
diff --git a/python/fatcat_tools/importers/jalc.py b/python/fatcat_tools/importers/jalc.py
index 2f10e533..a737ac9f 100644
--- a/python/fatcat_tools/importers/jalc.py
+++ b/python/fatcat_tools/importers/jalc.py
@@ -1,5 +1,4 @@
import datetime
-import sqlite3
import sys
from typing import Any, Dict, List, Optional, Sequence
@@ -117,50 +116,8 @@ class JalcImporter(EntityImporter):
)
self.create_containers = kwargs.get("create_containers", True)
- extid_map_file = kwargs.get("extid_map_file")
- self.extid_map_db = None
- if extid_map_file:
- db_uri = "file:{}?mode=ro".format(extid_map_file)
- print("Using external ID map: {}".format(db_uri))
- self.extid_map_db = sqlite3.connect(db_uri, uri=True)
- else:
- print("Not using external ID map")
-
self.read_issn_map_file(issn_map_file)
- def lookup_ext_ids(self, doi: str) -> Dict[str, Any]:
- if self.extid_map_db is None:
- return dict(
- core_id=None,
- pmid=None,
- pmcid=None,
- wikidata_qid=None,
- arxiv_id=None,
- jstor_id=None,
- )
- row = self.extid_map_db.execute(
- "SELECT core, pmid, pmcid, wikidata FROM ids WHERE doi=? LIMIT 1", [doi.lower()]
- ).fetchone()
- if row is None:
- return dict(
- core_id=None,
- pmid=None,
- pmcid=None,
- wikidata_qid=None,
- arxiv_id=None,
- jstor_id=None,
- )
- row = [str(cell or "") or None for cell in row]
- return dict(
- core_id=row[0],
- pmid=row[1],
- pmcid=row[2],
- wikidata_qid=row[3],
- # TODO:
- arxiv_id=None,
- jstor_id=None,
- )
-
def want(self, raw_record: Any) -> bool:
return True
@@ -330,9 +287,6 @@ class JalcImporter(EntityImporter):
# reasonable default for this collection
release_type = "article-journal"
- # external identifiers
- extids = self.lookup_ext_ids(doi=doi)
-
# extra:
# translation_of
# aliases
@@ -356,12 +310,6 @@ class JalcImporter(EntityImporter):
release_year=release_year,
ext_ids=fatcat_openapi_client.ReleaseExtIds(
doi=doi,
- pmid=extids["pmid"],
- pmcid=extids["pmcid"],
- wikidata_qid=extids["wikidata_qid"],
- core=extids["core_id"],
- arxiv=extids["arxiv_id"],
- jstor=extids["jstor_id"],
),
volume=volume,
issue=issue,