diff options
Diffstat (limited to 'python/fatcat_tools/importers/datacite.py')
| -rw-r--r-- | python/fatcat_tools/importers/datacite.py | 109 |
1 files changed, 80 insertions, 29 deletions
diff --git a/python/fatcat_tools/importers/datacite.py b/python/fatcat_tools/importers/datacite.py index f93362d6..6c050565 100644 --- a/python/fatcat_tools/importers/datacite.py +++ b/python/fatcat_tools/importers/datacite.py @@ -478,35 +478,7 @@ class DataciteImporter(EntityImporter): license_slug = slug license_extra.append(lic) - # Release type. Try to determine the release type from a variety of - # types supplied in datacite. The "attributes.types.resourceType" is - # uncontrolled (170000+ unique values, from "null", "Dataset" to - # "Jupyter Notebook" and "Macroseismic Data Points" or "2 days of IP - # flows in 2009") citeproc may be the closest, but not always supplied. - # Order lookup roughly by completeness of mapping. - for typeType in ('citeproc', 'ris', 'schemaOrg', 'bibtex', 'resourceTypeGeneral'): - value = attributes.get('types', {}).get(typeType) - release_type = DATACITE_TYPE_MAP.get(typeType, {}).get(value) - if release_type is not None: - break - - if release_type is None: - print("[{}] no mapped type: {}".format(doi, value), file=sys.stderr) - - # release_type exception: Global Biodiversity Information Facility - # publishes highly interesting datasets, but titles are mostly the same - # ("GBIF Occurrence Download" or "Occurrence Download"); set - # release_type to "stub" (CSL/FC). - if publisher == 'The Global Biodiversity Information Facility': - release_type = 'stub' - - # release_type exception: lots of "Experimental Crystal Structure Determination" - if publisher == 'Cambridge Crystallographic Data Centre': - release_type = 'entry' - - # Supplement files, e.g. "Additional file 1: ASE constructs in questionnaire." - if title.lower().startswith('additional file'): - release_type = 'stub' + release_type = self.datacite_release_type(doi, attributes) # Language values are varied ("ger", "es", "English", "ENG", "en-us", # "other", ...). Try to crush it with langcodes: "It may sound to you @@ -693,6 +665,85 @@ class DataciteImporter(EntityImporter): license_slug=license_slug, version=version, ) + re = self.biblio_hacks(re) + return re + + @staticmethod + def datacite_release_type(doi, attributes): + """ + Release type. Try to determine the release type from a variety of types + supplied in datacite. The "attributes.types.resourceType" is + uncontrolled (170000+ unique values, from "null", "Dataset" to "Jupyter + Notebook" and "Macroseismic Data Points" or "2 days of IP flows in + 2009") citeproc may be the closest, but not always supplied. Order + lookup roughly by completeness of mapping. + """ + + release_type = None + if not attributes.get('types'): + return None + types = attributes['types'] + + for typeType in ('citeproc', 'ris', 'schemaOrg', 'bibtex', 'resourceTypeGeneral'): + value = types.get(typeType) + release_type = DATACITE_TYPE_MAP.get(typeType, {}).get(value) + if release_type is not None: + break + + # special case: figshare "collections" which group other entities + if doi.startswith('10.6084/') or doi.startswith('10.25384'): + if types.get('resourceType') == "Collection": + release_type = "stub" + + if release_type is None: + print("[{}] no mapped type: {}".format(doi, types), file=sys.stderr) + + return release_type + + @staticmethod + def biblio_hacks(re): + """ + This function handles known special cases. For example, + publisher-specific or platform-specific workarounds. + """ + + # only runs on datacite entities with a DOI + assert re.ext_ids.doi + + # release_type exception: Global Biodiversity Information Facility + # publishes highly interesting datasets, but titles are mostly the same + # ("GBIF Occurrence Download" or "Occurrence Download"); set + # release_type to "stub" (CSL/FC). + if re.title == 'GBIF Occurrence Download' and re.ext_ids.doi.startswith('10.15468/dl.'): + re.release_type = 'stub' + + # release_type exception: lots of "Experimental Crystal Structure Determination" + # publisher: "Cambridge Crystallographic Data Centre" + if re.ext_ids.doi.startswith('10.5517/'): + re.release_type = 'entry' + + # Supplement files, e.g. "Additional file 1: ASE constructs in questionnaire." + if re.title.lower().startswith('additional file') and re.release_type in ('article', 'article-journal'): + re.release_type = 'component' + + # figshare + if re.ext_ids.doi.startswith('10.6084/') or re.ext_ids.doi.startswith('10.25384'): + # set version if DOI ends with versioned suffix + doi_suffix = re.ext_ids.doi.split('.')[-1] + if doi_suffix and doi_suffix.startswith('v') and doi_suffix[1:].isdigit(): + re.version = doi_suffix + # "Figure 123 from " -> component + # "Table S1. ;Figure S1;Figure S2. ;Figure S3. ;Figure S4. from Use of organic exudates from two polar diatoms by bacterial isolates from the Arctic ocean" + if " from " in re.title and re.release_type not in ('stub', 'graphic'): + if re.title.startswith("Figure "): + re.release_type = "component" + elif re.title.startswith("Table "): + re.release_type = "component" + + # figshare.com + if re.ext_ids.doi.startswith('10.6084/m9.figshare.') and re.extra.get('container_name') is None: + re.extra['container_name'] = "figshare.com" + return re def try_update(self, re): |