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-rwxr-xr-xpython/fatcat_import.py57
1 files changed, 24 insertions, 33 deletions
diff --git a/python/fatcat_import.py b/python/fatcat_import.py
index 294a1949..9e2ee510 100755
--- a/python/fatcat_import.py
+++ b/python/fatcat_import.py
@@ -1,47 +1,40 @@
#!/usr/bin/env python3
-"""
-"""
-
import os, sys, argparse
from fatcat_tools import authenticated_api
-from fatcat_tools.importers import CrossrefImporter, OrcidImporter, \
- JournalMetadataImporter, MatchedImporter, GrobidMetadataImporter, make_kafka_consumer
+from fatcat_tools.importers import *
def run_crossref(args):
- fci = CrossrefImporter(args.api, args.issn_map_file,
+ fci = CrossrefImporter(args.api,
+ args.issn_map_file,
extid_map_file=args.extid_map_file,
- create_containers=(not args.no_create_containers),
- check_existing=(not args.no_release_updates))
+ edit_batch_size=args.batch_size,
+ bezerk_mode=args.bezerk_mode)
if args.kafka_mode:
- consumer = make_kafka_consumer(
- args.kafka_hosts, args.kafka_env, "api-crossref", "fatcat-import")
- fci.process_batch(consumer, size=args.batch_size, decode_kafka=True)
+ KafkaJsonPusher(fci, args.kafka_hosts, args.kafka_env, "api-crossref", "fatcat-import").run()
else:
- fci.process_batch(args.json_file, size=args.batch_size)
- fci.describe_run()
+ JsonLinePusher(fci).run()
def run_orcid(args):
- foi = OrcidImporter(args.api)
- foi.process_batch(args.json_file, size=args.batch_size)
- foi.describe_run()
+ foi = OrcidImporter(args.api,
+ edit_batch_size=args.batch_size)
+ JsonLinePusher(foi, args.json_file).run()
def run_journal_metadata(args):
- fii = JournalMetadataImporter(args.api)
- fii.process_csv_batch(args.csv_file, size=args.batch_size)
- fii.describe_run()
+ fii = JournalMetadataImporter(args.api,
+ edit_batch_size=args.batch_size)
+ CsvLinePusher(fii, args.csv_file).run()
def run_matched(args):
fmi = MatchedImporter(args.api,
- skip_file_updates=args.no_file_updates)
- fmi.process_batch(args.json_file, size=args.batch_size)
- fmi.describe_run()
+ bezerk_mode=args.bezerk_mode,
+ edit_batch_size=args.batch_size)
+ JsonLinePusher(fmi, args.json_file).run()
def run_grobid_metadata(args):
- fmi = GrobidMetadataImporter(args.api)
- fmi.process_source(args.tsv_file, group_size=args.group_size)
- fmi.describe_run()
+ fmi = GrobidMetadataImporter(args.api, edit_batch_size=args.batch_size)
+ LinePusher(fmi, args.tsv_file).run()
def main():
parser = argparse.ArgumentParser()
@@ -73,18 +66,15 @@ def main():
sub_crossref.add_argument('--extid-map-file',
help="DOI-to-other-identifiers sqlite3 database",
default=None, type=str)
- sub_crossref.add_argument('--no-create-containers',
- action='store_true',
- help="skip creation of new container entities based on ISSN")
sub_crossref.add_argument('--batch-size',
help="size of batch to send",
default=50, type=int)
sub_crossref.add_argument('--kafka-mode',
action='store_true',
help="consume from kafka topic (not stdin)")
- sub_crossref.add_argument('--no-release-updates',
+ sub_crossref.add_argument('--bezerk-mode',
action='store_true',
- help="don't lookup existing DOIs, just insert (only for bootstrap)")
+ help="don't lookup existing DOIs, just insert (clobbers; only for fast bootstrap)")
sub_orcid = subparsers.add_parser('orcid')
sub_orcid.set_defaults(
@@ -118,12 +108,12 @@ def main():
sub_matched.add_argument('json_file',
help="JSON file to import from (or stdin)",
default=sys.stdin, type=argparse.FileType('r'))
- sub_matched.add_argument('--no-file-updates',
- action='store_true',
- help="don't lookup existing files, just insert (only for bootstrap)")
sub_matched.add_argument('--batch-size',
help="size of batch to send",
default=50, type=int)
+ sub_matched.add_argument('--bezerk-mode',
+ action='store_true',
+ help="don't lookup existing files, just insert (clobbers; only for fast bootstrap)")
sub_grobid_metadata = subparsers.add_parser('grobid-metadata')
sub_grobid_metadata.set_defaults(
@@ -144,6 +134,7 @@ def main():
args.api = authenticated_api(
args.host_url,
+ # token is an optional kwarg (can be empty string, None, etc)
token=os.environ.get(args.auth_var))
args.func(args)