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Diffstat (limited to 'notes/bulk_edits/2019-12-20_orcid.md')
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diff --git a/notes/bulk_edits/2019-12-20_orcid.md b/notes/bulk_edits/2019-12-20_orcid.md deleted file mode 100644 index 33dde32f..00000000 --- a/notes/bulk_edits/2019-12-20_orcid.md +++ /dev/null @@ -1,43 +0,0 @@ - -Newer ORCID dumps are XML, not JSON. But there is a conversion tool! - - https://github.com/ORCID/orcid-conversion-lib - -Commands: - - wget https://github.com/ORCID/orcid-conversion-lib/raw/master/target/orcid-conversion-lib-0.0.2-full.jar - java -jar orcid-conversion-lib-0.0.2-full.jar OPTIONS - - java -jar orcid-conversion-lib-0.0.2-full.jar --tarball -i ORCID_2019_summaries.tar.gz -v v3_0rc1 -o ORCID_2019_summaries_json.tar.gz - - # [...] - # Sat Dec 21 04:43:50 UTC 2019 done 7300000 - # Sat Dec 21 04:44:08 UTC 2019 done 7310000 - # Sat Dec 21 04:44:17 UTC 2019 finished errors 0 - -Importing in QA, ran in to some lines like: - - {"response-code":409,"developer-message":"409 Conflict: The ORCID record is locked and cannot be edited. ORCID https://orcid.org/0000-0003-0014-6598","user-message":"The ORCID record is locked.","error-code":9018,"more-info":"https://members.orcid.org/api/resources/troubleshooting"} - {"response-code":409,"developer-message":"409 Conflict: The ORCID record is locked and cannot be edited. ORCID https://orcid.org/0000-0003-3750-5654","user-message":"The ORCID record is locked.","error-code":9018,"more-info":"https://members.orcid.org/api/resources/troubleshooting"} - {"response-code":409,"developer-message":"409 Conflict: The ORCID record is locked and cannot be edited. ORCID https://orcid.org/0000-0003-1424-4826","user-message":"The ORCID record is locked.","error-code":9018,"more-info":"https://members.orcid.org/api/resources/troubleshooting"} - {"response-code":409,"developer-message":"409 Conflict: The ORCID record is locked and cannot be edited. ORCID https://orcid.org/0000-0002-5340-9665","user-message":"The ORCID record is locked.","error-code":9018,"more-info":"https://members.orcid.org/api/resources/troubleshooting"} - -Needed to patch to filter those out. Then ran ok like: - - zcat /srv/fatcat/datasets/ORCID_2019_summaries.sample_10k.json.gz | ./fatcat_import.py orcid - - Counter({'total': 10000, 'exists': 5323, 'insert': 4493, 'skip': 184, 'skip-no-person': 160, 'update': 0}) - -New dump is about 7.3 million rows, so expecting about 3.2 million new -entities, 250k skips. - -Doing bulk run like: - - time zcat /srv/fatcat/datasets/ORCID_2019_summaries.json.gz | parallel -j8 --round-robin --pipe ./fatcat_import.py orcid - - -Prod timing: - - Counter({'total': 910643, 'exists': 476812, 'insert': 416583, 'skip': 17248, 'update': 0}) - - real 47m27.658s - user 245m44.272s - sys 14m50.836s |