diff options
| -rwxr-xr-x | extra/journal_metadata/chocula.py | 58 | ||||
| -rw-r--r-- | extra/journal_metadata/chocula_schema.sql | 6 |
2 files changed, 43 insertions, 21 deletions
diff --git a/extra/journal_metadata/chocula.py b/extra/journal_metadata/chocula.py index 415b741f..3d77fe45 100755 --- a/extra/journal_metadata/chocula.py +++ b/extra/journal_metadata/chocula.py @@ -75,7 +75,7 @@ CLOCKSS_FILE = 'data/kbart_CLOCKSS.txt' PORTICO_FILE = 'data/Portico_Holding_KBart.txt' JSTOR_FILE = 'data/jstor_all-archive-titles.txt' SIM_FILE = 'data/MASTER TITLE_METADATA_LIST_20171019.converted.csv' -IA_CRAWL_FILE = 'data/journal_homepage_results.partial.tsv' +IA_CRAWL_FILE = 'data/url_status.partial.json' SZCZEPANSKI_FILE = 'data/Jan-Szczepanski-Open-Access-Journals-2018_0.fixed.json' EZB_FILE = 'data/ezb_metadata.json' GOLD_OA_FILE = 'data/ISSN_Gold-OA_3.0.csv' @@ -355,23 +355,26 @@ def parse_url(url): Returns None if url is really bad (not a URL). """ - if not url or 'mailto:' in url.lower() or url in ('http://n/a', 'http://N/A'): + if not url or 'mailto:' in url.lower() or url.lower() in ('http://n/a', 'http://na/', 'http://na'): return None if url.startswith('www.'): url = "http://" + url url.replace('Http://', 'http://') url = str(urlcanon.semantic_precise(url)) + if url == 'http://na/': + # sort of redundant with above, but some only match after canonicalization + return None url_surt = surt.surt(url) tld = tldextract.extract(url) host = '.'.join(tld) if host.startswith('.'): host = host[1:] return dict(url=url, - url_surt=url_surt, - host=host, - registered_domain=tld.registered_domain, - suffix=tld.suffix) + url_surt=url_surt or None, + host=host or None, + registered_domain=tld.registered_domain or None, + suffix=tld.suffix or None) def test_parse_url(): @@ -483,8 +486,13 @@ class ChoculaDatabase(): return self.c.execute("INSERT OR REPLACE INTO homepage (issnl, surt, url, host, domain, suffix) VALUES (?,?,?,?,?,?)", - (issnl, meta['url_surt'], meta['url'], meta['host'], - meta['registered_domain'], meta['suffix'])) + (issnl, + meta['url_surt'], + meta['url'], + meta['host'], + meta['registered_domain'], + meta['suffix'] + )) def index_entrez(self, args): path = args.input_file or ENTREZ_FILE @@ -994,17 +1002,26 @@ class ChoculaDatabase(): def update_url_status(self, args): path = args.input_file or IA_CRAWL_FILE print("##### Loading IA Homepage Crawl Results...") - reader = csv.DictReader(open(path), delimiter='\t', - fieldnames=("ISSN", "first_url", "first_status", "last_status", "last_url") - ) counts = Counter() self.c = self.db.cursor() - for row in reader: + for row in open(path, 'r'): + if not row.strip(): + continue + row = json.loads(row) counts['total'] += 1 - url = row['first_url'] + url = row['url'] assert(url) - self.c.execute("UPDATE homepage SET status_code=?, terminal_url=?, terminal_status_code=? WHERE url=?", - (row['first_status'], row['last_url'], row['last_status'], url)) + self.c.execute("UPDATE homepage SET status_code=?, crawl_error=?, terminal_url=?, terminal_status_code=?, platform_software=?, issnl_in_body=?, blocked=?, gwb_url_success_dt=?, gwb_terminal_url_success_dt=? WHERE url=?", + (row['status_code'], + row.get('crawl_error'), + row.get('terminal_url'), + row.get('terminal_status_code'), + row.get('platform_software'), + row.get('issnl_in_body'), + row.get('blocked'), + row.get('gwb_url_success_dt'), + row.get('gwb_terminal_url_success_dt'), + url)) counts['updated'] += 1 self.c.close() self.db.commit() @@ -1152,6 +1169,8 @@ class ChoculaDatabase(): out['any_homepage'] = True if hrow['terminal_status_code'] == 200 and hrow['host'] != 'web.archive.org': out['any_live_homepage'] = True + if hrow['gwb_url_success_dt'] or hrow['gwb_terminal_url_success_dt']: + out['any_gwb_homepage'] = True if out.get('wikidata_qid'): assert out['wikidata_qid'].startswith('Q') @@ -1184,7 +1203,7 @@ class ChoculaDatabase(): out['publisher_type'] = 'longtail' out['is_longtail'] = True - self.c.execute("INSERT OR REPLACE INTO journal (issnl, issne, issnp, wikidata_qid, fatcat_ident, name, publisher, country, lang, is_oa, sherpa_color, is_longtail, is_active, publisher_type, has_dois, any_homepage, any_live_homepage, known_issnl, valid_issnl, release_count, ia_count, ia_frac, kbart_count, kbart_frac, preserved_count, preserved_frac) VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)", + self.c.execute("INSERT OR REPLACE INTO journal (issnl, issne, issnp, wikidata_qid, fatcat_ident, name, publisher, country, lang, is_oa, sherpa_color, is_longtail, is_active, publisher_type, has_dois, any_homepage, any_live_homepage, any_gwb_homepage, known_issnl, valid_issnl, release_count, ia_count, ia_frac, kbart_count, kbart_frac, preserved_count, preserved_frac) VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)", (issnl, out.get('issne'), out.get('issnp'), @@ -1202,6 +1221,7 @@ class ChoculaDatabase(): out.get('has_dois', False), out.get('any_homepage', False), out.get('any_live_homepage', False), + out.get('any_gwb_homepage', False), out.get('known_issnl'), out.get('valid_issnl'), @@ -1231,13 +1251,12 @@ class ChoculaDatabase(): self.index_wikidata(args) self.load_fatcat(args) self.load_fatcat_stats(args) - self.update_url_status(args) #self.preserve_kbart('lockss', LOCKSS_FILE) #self.preserve_kbart('clockss', CLOCKSS_FILE) #self.preserve_kbart('portico', PORTICO_FILE) #self.preserve_kbart('jstor', JSTOR_FILE) #self.preserve_sim(args) - #self.load_homepage_crawl(IA_CRAWL_FILE) + self.update_url_status(args) self.summarize(args) print("### Done with everything!") @@ -1296,6 +1315,9 @@ def main(): sub = subparsers.add_parser('index_{}'.format(ind)) sub.set_defaults(func='index_{}'.format(ind)) + sub = subparsers.add_parser('preserve_sim') + sub.set_defaults(func='preserve_sim') + sub = subparsers.add_parser('load_fatcat') sub.set_defaults(func='load_fatcat') diff --git a/extra/journal_metadata/chocula_schema.sql b/extra/journal_metadata/chocula_schema.sql index 46b282d0..2db1065e 100644 --- a/extra/journal_metadata/chocula_schema.sql +++ b/extra/journal_metadata/chocula_schema.sql @@ -70,9 +70,9 @@ CREATE TABLE IF NOT EXISTS homepage issnl TEXT NOT NULL, surt TEXT NOT NULL, url TEXT NOT NULL, - host TEXT NOT NULL, - domain TEXT NOT NULL, - suffix TEXT NOT NULL, + host TEXT, + domain TEXT, + suffix TEXT, status_code INTEGER, crawl_error TEXT, terminal_url TEXT, |