datacite: abstracts may be strings or list of strings

6 files changed, 202 insertions, 3 deletions

diff --git a/python/fatcat_tools/importers/datacite.py b/python/fatcat_tools/importers/datacite.py
index 2f1e17d1..4128b3ca 100644
--- a/python/fatcat_tools/importers/datacite.py
+++ b/python/fatcat_tools/importers/datacite.py
@@ -468,11 +468,24 @@ class DataciteImporter(EntityImporter):
         for desc in descs:
             if not desc.get('descriptionType') == 'Abstract':
                 continue
-            if len(desc.get('description', '') or '') < 10:
-                continue
+
+            # Description maybe a string or list.
             text = desc.get('description', '')
+            if not text:
+                continue
+            if isinstance(text, list):
+                try:
+                    text = "\n".join(text)
+                except TypeError as err:
+                    continue # Bail out, if it is not a list of strings.
+
+            # Limit length.
+            if len(text) < 10:
+                continue
             if len(text) > MAX_ABSTRACT_LENGTH:
                 text = text[:MAX_ABSTRACT_LENGTH] + " [...]"
+
+            # Detect language.
             lang = None
             try:
                 lang = langdetect.detect(text)
diff --git a/python/tests/files/datacite/datacite_doc_27.json b/python/tests/files/datacite/datacite_doc_27.json
new file mode 100644
index 00000000..ff9c00f4
--- /dev/null
+++ b/python/tests/files/datacite/datacite_doc_27.json
@@ -0,0 +1,60 @@
+{
+  "attributes": {
+    "contributors": [
+      {
+        "affiliation": [],
+        "contributorType": "Editor",
+        "familyName": "Wemmer",
+        "givenName": "David",
+        "name": "Wemmer, David",
+        "nameType": "Personal"
+      }
+    ],
+    "creators": [
+      {
+        "affiliation": [
+          "Department of pataphysics"
+        ],
+        "name": "Anton Welch",
+        "nameIdentifiers": []
+      }
+    ],
+    "dates": [
+      {
+        "date": "2017-08-24",
+        "dateType": "Created"
+      },
+      {
+        "date": "2019-08-04",
+        "dateType": "Updated"
+      },
+      {
+        "date": "2017",
+        "dateType": "Issued"
+      }
+    ],
+    "descriptions": [
+        {"description": "Hello World", "descriptionType": "Abstract"}
+    ],
+    "doi": "10.7916/d86x0cg1",
+    "isActive": true,
+    "language": "DE-CH",
+    "publicationYear": 2016,
+    "state": "findable",
+    "titles": [
+      {
+        "title": "Additional file 123: ABC"
+      },
+      {
+        "title": "DEF",
+        "titleType": "Subtitle"
+      }
+    ],
+    "types": {
+      "bibtex": "misc",
+      "citeproc": "article",
+      "ris": "GEN",
+      "schemaOrg": "CreativeWork"
+    }
+  }
+}
diff --git a/python/tests/files/datacite/datacite_doc_28.json b/python/tests/files/datacite/datacite_doc_28.json
new file mode 100644
index 00000000..0d03ecc8
--- /dev/null
+++ b/python/tests/files/datacite/datacite_doc_28.json
@@ -0,0 +1,60 @@
+{
+  "attributes": {
+    "contributors": [
+      {
+        "affiliation": [],
+        "contributorType": "Editor",
+        "familyName": "Wemmer",
+        "givenName": "David",
+        "name": "Wemmer, David",
+        "nameType": "Personal"
+      }
+    ],
+    "creators": [
+      {
+        "affiliation": [
+          "Department of pataphysics"
+        ],
+        "name": "Anton Welch",
+        "nameIdentifiers": []
+      }
+    ],
+    "dates": [
+      {
+        "date": "2017-08-24",
+        "dateType": "Created"
+      },
+      {
+        "date": "2019-08-04",
+        "dateType": "Updated"
+      },
+      {
+        "date": "2017",
+        "dateType": "Issued"
+      }
+    ],
+    "descriptions": [
+        {"description": ["Hello", "World"], "descriptionType": "Abstract"}
+    ],
+    "doi": "10.7916/d86x0cg1",
+    "isActive": true,
+    "language": "DE-CH",
+    "publicationYear": 2016,
+    "state": "findable",
+    "titles": [
+      {
+        "title": "Additional file 123: ABC"
+      },
+      {
+        "title": "DEF",
+        "titleType": "Subtitle"
+      }
+    ],
+    "types": {
+      "bibtex": "misc",
+      "citeproc": "article",
+      "ris": "GEN",
+      "schemaOrg": "CreativeWork"
+    }
+  }
+}
diff --git a/python/tests/files/datacite/datacite_result_27.json b/python/tests/files/datacite/datacite_result_27.json
new file mode 100644
index 00000000..3d033e6a
--- /dev/null
+++ b/python/tests/files/datacite/datacite_result_27.json
@@ -0,0 +1,33 @@
+{
+  "abstracts": [{"content": "Hello World", "lang": "en", "mimetype": "text/plain"}],
+  "contribs": [
+    {
+      "index": 0,
+      "raw_affiliation": "Department of pataphysics",
+      "raw_name": "Anton Welch",
+      "role": "author"
+    },
+    {
+      "extra": {
+        "type": "Editor"
+      },
+      "given_name": "David",
+      "raw_name": "David Wemmer",
+      "surname": "Wemmer"
+    }
+  ],
+  "ext_ids": {
+    "doi": "10.7916/d86x0cg1"
+  },
+  "extra": {
+    "datacite": {},
+    "release_month": 8
+  },
+  "refs": [],
+  "release_date": "2017-08-24",
+  "release_stage": "published",
+  "release_type": "stub",
+  "release_year": 2017,
+  "subtitle": "DEF",
+  "title": "Additional file 123: ABC"
+}
diff --git a/python/tests/files/datacite/datacite_result_28.json b/python/tests/files/datacite/datacite_result_28.json
new file mode 100644
index 00000000..84bed9c8
--- /dev/null
+++ b/python/tests/files/datacite/datacite_result_28.json
@@ -0,0 +1,33 @@
+{
+  "abstracts": [{"content": "Hello\nWorld", "lang": "en", "mimetype": "text/plain"}],
+  "contribs": [
+    {
+      "index": 0,
+      "raw_affiliation": "Department of pataphysics",
+      "raw_name": "Anton Welch",
+      "role": "author"
+    },
+    {
+      "extra": {
+        "type": "Editor"
+      },
+      "given_name": "David",
+      "raw_name": "David Wemmer",
+      "surname": "Wemmer"
+    }
+  ],
+  "ext_ids": {
+    "doi": "10.7916/d86x0cg1"
+  },
+  "extra": {
+    "datacite": {},
+    "release_month": 8
+  },
+  "refs": [],
+  "release_date": "2017-08-24",
+  "release_stage": "published",
+  "release_type": "stub",
+  "release_year": 2017,
+  "subtitle": "DEF",
+  "title": "Additional file 123: ABC"
+}
diff --git a/python/tests/import_datacite.py b/python/tests/import_datacite.py
index 89671cd2..a7d514ea 100644
--- a/python/tests/import_datacite.py
+++ b/python/tests/import_datacite.py
@@ -287,7 +287,7 @@ def test_datacite_conversions(datacite_importer):
     for now.
     """
     datacite_importer.debug = True
-    for i in range(27):
+    for i in range(29):
         src = 'tests/files/datacite/datacite_doc_{0:02d}.json'.format(i)
         dst = 'tests/files/datacite/datacite_result_{0:02d}.json'.format(i)
         print('testing mapping from {} => {}'.format(src, dst))