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authorBryan Newbold <bnewbold@robocracy.org>2019-01-25 16:42:28 -0800
committerBryan Newbold <bnewbold@robocracy.org>2019-01-25 16:42:28 -0800
commit7d55f030cadbdc213e0773a52ad52ccfbfa07cad (patch)
tree8a19720c83521e81a865dfd1a5a7a6890652e49d /python
parent2e6e5d9b270044d3462a95512a12520650cc45af (diff)
downloadfatcat-7d55f030cadbdc213e0773a52ad52ccfbfa07cad.tar.gz
fatcat-7d55f030cadbdc213e0773a52ad52ccfbfa07cad.zip
update journal meta import/transform
Diffstat (limited to 'python')
-rwxr-xr-xpython/fatcat_import.py6
-rw-r--r--python/fatcat_tools/importers/journal_metadata.py143
-rw-r--r--python/fatcat_tools/transforms.py183
-rw-r--r--python/tests/files/journal_extra_metadata.snip.csv10
-rw-r--r--python/tests/files/journal_metadata.sample.json20
-rw-r--r--python/tests/import_journal_metadata.py18
6 files changed, 226 insertions, 154 deletions
diff --git a/python/fatcat_import.py b/python/fatcat_import.py
index a47aa175..8d952067 100755
--- a/python/fatcat_import.py
+++ b/python/fatcat_import.py
@@ -24,7 +24,7 @@ def run_orcid(args):
def run_journal_metadata(args):
fii = JournalMetadataImporter(args.api,
edit_batch_size=args.batch_size)
- CsvLinePusher(fii, args.csv_file).run()
+ JsonLinePusher(fii, args.json_file).run()
def run_matched(args):
fmi = MatchedImporter(args.api,
@@ -93,8 +93,8 @@ def main():
func=run_journal_metadata,
auth_var="FATCAT_AUTH_WORKER_JOURNAL_METADATA",
)
- sub_journal_metadata.add_argument('csv_file',
- help="Journal ISSN CSV metadata file to import from (or stdin)",
+ sub_journal_metadata.add_argument('json_file',
+ help="Journal JSON metadata file to import from (or stdin)",
default=sys.stdin, type=argparse.FileType('r'))
sub_journal_metadata.add_argument('--batch-size',
help="size of batch to send",
diff --git a/python/fatcat_tools/importers/journal_metadata.py b/python/fatcat_tools/importers/journal_metadata.py
index cf3971b5..7f6b1ee8 100644
--- a/python/fatcat_tools/importers/journal_metadata.py
+++ b/python/fatcat_tools/importers/journal_metadata.py
@@ -28,90 +28,9 @@ def truthy(s):
class JournalMetadataImporter(EntityImporter):
"""
Imports journal metadata ("containers") by ISSN, currently from a custom
- (data munged) .csv file format
-
- CSV format (generated from git.archive.org/webgroup/oa-journal-analysis):
-
- ISSN-L,in_doaj,in_road,in_norwegian,in_crossref,title,publisher,url,lang,ISSN-print,ISSN-electronic,doi_count,has_doi,is_oa,is_kept,publisher_size,url_live,url_live_status,url_live_final_status,url_live_final_url,url_live_status_simple,url_live_final_status_simple,url_domain,gwb_pdf_count
-
-
- 'extra' fields:
-
- doaj
- as_of: datetime of most recent check; if not set, not actually in DOAJ
- seal: bool
- work_level: bool (are work-level publications deposited with DOAJ?)
- archiving: array, can include 'library' or 'other'
- road
- as_of: datetime of most recent check; if not set, not actually in ROAD
- pubmed (TODO: delete?)
- as_of: datetime of most recent check; if not set, not actually indexed in pubmed
- norwegian (TODO: drop this?)
- as_of: datetime of most recent check; if not set, not actually indexed in pubmed
- id (integer)
- level (integer; 0-2)
- kbart
- lockss
- year_rle
- volume_rle
- portico
- ...
- clockss
- ...
- sherpa_romeo
- color
- jstor
- year_rle
- volume_rle
- scopus
- id
- TODO: print/electronic distinction?
- wos
- id
- doi
- crossref_doi: DOI of the title in crossref (if exists)
- prefixes: array of strings (DOI prefixes, up to the '/'; any registrar, not just Crossref)
- ia
- sim
- nap_id
- year_rle
- volume_rle
- longtail: boolean
- homepage
- as_of: datetime of last attempt
- url
- status: HTTP/heritrix status of homepage crawl
-
- issnp: string
- issne: string
- coden: string
- abbrev: string
- oclc_id: string (TODO: lookup?)
- lccn_id: string (TODO: lookup?)
- dblb_id: string
- default_license: slug
- original_name: native name (if name is translated)
- platform: hosting platform: OJS, wordpress, scielo, etc
- mimetypes: array of strings (eg, 'application/pdf', 'text/html')
- first_year: year (integer)
- last_year: if publishing has stopped
- primary_language: single ISO code, or 'mixed'
- languages: array of ISO codes
- region: TODO: continent/world-region
- nation: shortcode of nation
- discipline: TODO: highest-level subject; "life science", "humanities", etc
- field: TODO: narrower description of field
- subjects: TODO?
- url: homepage
- is_oa: boolean. If true, can assume all releases under this container are "Open Access"
- TODO: domains, if exclusive?
- TODO: fulltext_regex, if a known pattern?
-
- For KBART, etc:
- We "over-count" on the assumption that "in-progress" status works will soon actually be preserved.
- year and volume spans are run-length-encoded arrays, using integers:
- - if an integer, means that year is preserved
- - if an array of length 2, means everything between the two numbers (inclusive) is preserved
+ munged JSON format (see ../extra/journal_metadata/).
+
+ See guide for details on the many 'extra' fields used here.
"""
def __init__(self, api, **kwargs):
@@ -125,34 +44,50 @@ class JournalMetadataImporter(EntityImporter):
editgroup_extra=eg_extra)
def want(self, raw_record):
- if raw_record.get('ISSN-L'):
+ if raw_record.get('issnl'):
return True
return False
def parse_record(self, row):
"""
- row is a python dict (parsed from CSV).
+ row is a python dict (parsed from JSON).
+
returns a ContainerEntity (or None if invalid or couldn't parse)
"""
- title = or_none(row['title'])
- issnl = or_none(row['ISSN-L'])
- if title is None or issnl is None:
- return None
- extra = dict(
- in_doaj=truthy(row['in_doaj']),
- in_road=truthy(row['in_road']),
- in_norwegian=truthy(row['in_norwegian']),
- language=or_none(row['lang']),
- url=or_none(row['url']),
- ISSNp=or_none(row['ISSN-print']),
- ISSNe=or_none(row['ISSN-electronic']),
- is_oa=truthy(row['is_oa']),
- is_kept=truthy(row['is_kept']),
- )
+
+ extra = dict()
+ for key in ('issne', 'issnp', 'languages', 'country', 'urls', 'abbrev',
+ 'coden', 'aliases', 'original_name', 'first_year', 'last_year',
+ 'platform', 'default_license', 'road', 'mimetypes',
+ 'sherpa_romeo', 'kbart'):
+ if row.get(key):
+ extra[key] = row[key]
+ # TODO: not including for now: norwegian, dois/crossref, ia
+
+ extra_doaj = dict()
+ if row.get('doaj'):
+ if row['doaj'].get('as_of'):
+ extra_doaj['as_of'] = row['doaj']['as_of']
+ if row['doaj'].get('works'):
+ extra_doaj['works'] = row['doaj']['works']
+ if extra_doaj:
+ extra['doaj'] = extra_doaj
+
+ extra_ia = dict()
+ # TODO: would like an ia.longtail_ia flag
+ if row.get('sim'):
+ extra_ia['sim'] = {
+ 'year_spans': row['sim']['year_spans'],
+ }
+ if extra_ia:
+ extra['ia'] = extra_ia
+
ce = fatcat_client.ContainerEntity(
- issnl=issnl,
- name=clean(title),
- publisher=or_none(clean(row['publisher'])),
+ issnl=row['issnl'],
+ container_type=None, # TODO
+ name=clean(row.get('name')),
+ publisher=clean(row.get('publisher')),
+ wikidata_qid=None, # TODO
extra=extra)
return ce
diff --git a/python/fatcat_tools/transforms.py b/python/fatcat_tools/transforms.py
index 2493b1ab..a85c877c 100644
--- a/python/fatcat_tools/transforms.py
+++ b/python/fatcat_tools/transforms.py
@@ -19,7 +19,22 @@ def entity_from_json(json_str, entity_type):
thing.data = json_str
return ac.deserialize(thing, entity_type)
-def release_to_elasticsearch(release):
+def check_kbart(year, archive):
+ if not archive or not archive.get('year_spans'):
+ return None
+ for span in archive['year_spans']:
+ if year >= span[0] and year <= span[1]:
+ return True
+ return False
+
+def test_check_kbart():
+
+ assert check_kbart(1990, dict(year_spans=[[2000, 2000]])) == False
+ assert check_kbart(2000, dict(year_spans=[[2000, 2000]])) == True
+ assert check_kbart(1950, dict(year_spans=[[1900, 1920], [1990, 2000]])) == False
+ assert check_kbart(1950, dict(year_spans=[[1900, 1920], [1930, 2000]])) == True
+
+def release_to_elasticsearch(entity):
"""
Converts from an entity model/schema to elasticsearch oriented schema.
@@ -27,15 +42,16 @@ def release_to_elasticsearch(release):
Raises exception on error (never returns None)
"""
- if release.state in ('redirect', 'deleted'):
+ if entity.state in ('redirect', 'deleted'):
return dict(
- ident = release.ident,
- state = release.state,
+ ident = entity.ident,
+ state = entity.state,
)
- elif release.state != 'active':
- raise ValueError("Unhandled release state: {}".format(release.state))
+ elif entity.state != 'active':
+ raise ValueError("Unhandled entity state: {}".format(entity.state))
# First, the easy ones (direct copy)
+ release = entity
t = dict(
ident = release.ident,
state = release.state,
@@ -57,11 +73,14 @@ def release_to_elasticsearch(release):
)
is_oa = None
+ is_preserved = None
is_longtail_oa = None
in_kbart = None
+ in_jstor = False
in_web = False
in_dweb = False
in_ia = False
+ in_ia_sim = False
in_shadow = False
if release.release_date:
@@ -88,19 +107,35 @@ def release_to_elasticsearch(release):
t['container_issnl'] = container.issnl
t['container_type'] = container.container_type
if container.extra:
- if container.extra.get('is_oa') or container.extra.get('in_doaj'):
+ c_extra = container.extra
+ if c_extra.get('kbart') and release.year:
+ in_jstor = check_kbart(release.year, c_extra['kbart'].get('jstor'))
+ in_kbart = in_jstor
+ for archive in ('portico', 'lockss', 'clockss'):
+ in_kbart = in_kbart or check_kbart(release.year, c_extra['kbart'].get(archive))
+
+ if c_extra.get('ia'):
+ if c_extra['ia'].get('sim') and release.year:
+ in_ia_sim = check_kbart(release, c_extra['ia']['sim'].get('year_spans'))
+ if c_extra['ia'].get('longtail_oa'):
+ is_longtail_oa = True
+ if c_extra.get('sherpa_romeo'):
+ if c_extra['sherpa_romeo'].get('color') == 'white':
+ is_oa = False
+ if c_extra.get('default_license') and c_extra.get('default_license').startswith('CC-'):
is_oa = True
- if container.extra.get('in_kbart'):
- # TODO: better KBART check goes here
- in_kbart = True
- if container.extra.get('ia'):
- # TODO: container longtail check goes here
- # TODO: sim/microfilm check goes here
- pass
- # TODO: SHERPA/Romeo goes here
+ if c_extra.get('doaj'):
+ if c_extra['doaj'].get('as_of'):
+ is_oa = True
+ if c_extra.get('road'):
+ if c_extra['road'].get('as_of'):
+ is_oa = True
else:
t['publisher'] = release.publisher
+ if release.jstor_id or (release.doi and release.doi.startswith('10.2307/')):
+ in_jstor = True
+
files = release.files or []
t['file_count'] = len(files)
t['fileset_count'] = len(release.filesets or [])
@@ -118,13 +153,15 @@ def release_to_elasticsearch(release):
if url.url.lower().startswith('http'):
in_web = True
if url.rel in ('dweb', 'p2p', 'ipfs', 'dat', 'torrent'):
- # TODO: not sure what rel will be
+ # not sure what rel will be for this stuff
in_dweb = True
if is_pdf:
any_pdf_url = url.url
if is_pdf and url.rel in ('webarchive', 'repository') and is_pdf:
is_preserved = True
good_pdf_url = url.url
+ if '//www.jstor.org/' in url.url:
+ in_jstor = True
if '//web.archive.org/' in url.url or '//archive.org/' in url.url:
in_ia = True
if is_pdf:
@@ -141,18 +178,15 @@ def release_to_elasticsearch(release):
extra = release.extra or dict()
if extra:
- # TODO: longtail OA check from GROBID here
- if extra.get('in_kbart'):
- # NOTE: not actually setting this anywhere
- in_kbart = True
if extra.get('is_oa'):
- # NOTE: not actually setting this anywhere
+ # NOTE: not actually setting this anywhere... but could
is_oa = True
- if extra.get('grobid'):
- if not t.get('container_name'):
- t['container_name'] = extra['grobid'].get('container_name')
- if extra['grobid'].get('longtail_oa'):
- is_longtail_oa = True
+ if extra.get('longtail_oa'):
+ # sometimes set by GROBID/matcher
+ is_oa = True
+ is_longtail_oa = True
+ if not t.get('container_name'):
+ t['container_name'] = extra.get('container_name')
if extra.get('crossref'):
if extra['crossref'].get('archive'):
# all crossref archives are KBART, I believe
@@ -163,8 +197,101 @@ def release_to_elasticsearch(release):
t['is_oa'] = is_oa
t['is_longtail_oa'] = is_longtail_oa
t['in_kbart'] = in_kbart
+ t['in_jstor'] = in_jstor
t['in_web'] = in_web
t['in_dweb'] = in_dweb
- t['in_ia'] = in_ia
- t['is_preserved'] = in_ia or in_kbart
+ t['in_ia'] = bool(in_ia)
+ t['is_preserved'] = bool(is_preserved or in_ia or in_kbart or in_jstor)
+ return t
+
+def container_to_elasticsearch(entity):
+ """
+ Converts from an entity model/schema to elasticsearch oriented schema.
+
+ Returns: dict
+ Raises exception on error (never returns None)
+ """
+
+ if entity.state in ('redirect', 'deleted'):
+ return dict(
+ ident = entity.ident,
+ state = entity.state,
+ )
+ elif entity.state != 'active':
+ raise ValueError("Unhandled entity state: {}".format(entity.state))
+
+ # First, the easy ones (direct copy)
+ t = dict(
+ ident = entity.ident,
+ state = entity.state,
+ revision = entity.revision,
+
+ name = entity.name,
+ publisher = entity.publisher,
+ container_type = entity.container_type,
+ issnl = entity.issnl,
+ wikidata_qid = entity.wikidata_qid,
+
+ entity_status = entity.entity_status,
+ language = entity.language,
+ license = entity.license_slug,
+ doi = entity.doi,
+ pmid = entity.pmid,
+ isbn13 = entity.isbn13,
+ core_id = entity.core_id,
+ arxiv_id = entity.core_id,
+ jstor_id = entity.jstor_id,
+ )
+
+ # TODO: region, discipline
+ # TODO: single primary language?
+ for key in ('country', 'languages', 'mimetypes', 'first_year', 'last_year'):
+ if entity.extra.get(key):
+ t[key] = entity.extra[key]
+
+ in_doaj = None
+ in_road = None
+ # TODO: not currently implemented
+ in_doi = None
+ # TODO: would be nice to have 'in_doaj_works', or maybe just "any_pid"
+ #in_doaj_works = None
+ in_sherpa_romeo = None
+ is_oa = None
+ # TODO: not actually set/stored anywhere?
+ is_longtail_oa = None
+ any_kbart = None
+ any_jstor = None
+ any_ia_sim = None
+
+ extra = entity.extra
+ if extra.get('doaj'):
+ if extra['doaj'].get('as_of'):
+ in_doaj = True
+ if extra.get('road'):
+ if extra['road'].get('as_of'):
+ in_road = True
+ if extra.get('default_license'):
+ if extra['default_license'].startswith('CC-'):
+ is_oa = True
+ if extra.get('sherpa_romeo'):
+ in_sherpa_romeo = True
+ if extra['sherpa_romeo'].get('color') == 'white':
+ is_oa = False
+ if extra.get('kbart'):
+ any_kbart = True
+ if extra['kbart'].get('jstor'):
+ any_jstor = True
+ if extra.get('ia'):
+ if extra['ia'].get('sim'):
+ any_ia_sim = True
+
+ t['in_doaj'] = is_doaj
+ t['in_road'] = is_road
+ t['in_doi'] = in_doi
+ t['in_sherpa_romeo'] = in_sherpa_romeo
+ t['is_oa'] = in_doaj or in_road or is_longtail_oa or ia_oa
+ t['is_longtail_oa'] = is_longtail_oa
+ t['any_kbart'] = any_ia_sim
+ t['any_jstor'] = any_ia_sim
+ t['any_ia_sim'] = bool(any_ia_sim)
return t
diff --git a/python/tests/files/journal_extra_metadata.snip.csv b/python/tests/files/journal_extra_metadata.snip.csv
deleted file mode 100644
index 8cc50ee9..00000000
--- a/python/tests/files/journal_extra_metadata.snip.csv
+++ /dev/null
@@ -1,10 +0,0 @@
-ISSN-L,in_doaj,in_road,in_norwegian,in_crossref,title,publisher,url,lang,ISSN-print,ISSN-electronic,doi_count,has_doi,is_oa,is_kept,publisher_size,url_live,url_live_status,url_live_final_status,url_live_final_url,url_live_status_simple,url_live_final_status_simple,url_domain,gwb_pdf_count
-0000-0019,False,False,True,False,Publishers weekly,,http://www.publishersweekly.com/,,0000-0019,2150-4008,0.0,False,False,False,,http://www.publishersweekly.com/,301.0,200.0,https://www.publishersweekly.com/,3xx,200,publishersweekly.com,1055.0
-0001-0782,False,False,True,True,Communications of the ACM,Association for Computing Machinery,http://www.acm.org/pubs/cacm/,,0001-0782,1557-7317,11894.0,True,False,True,55.0,http://www.acm.org/pubs/cacm/,301.0,200.0,https://cacm.acm.org/,3xx,200,acm.org,9.0
-0001-1452,False,False,True,True,AIAA Journal,American Institute of Aeronautics and Astronautics,http://www.aiaa.org/content.cfm?pageid=322&lupubid=2,,0001-1452,1533-385X,24193.0,True,False,True,6.0,http://www.aiaa.org/content.cfm?pageid=322&lupubid=2,404.0,404.0,http://www.aiaa.org/content.cfm?pageid=322&lupubid=2,404,404,aiaa.org,16.0
-0001-1541,False,False,True,True,AIChE Journal,Wiley Blackwell (John Wiley & Sons),http://www.aiche.org/Publications/AIChEJournal/index.aspx,,0001-1541,1547-5905,15860.0,True,False,True,607.0,http://www.aiche.org/Publications/AIChEJournal/index.aspx,301.0,200.0,https://www.aiche.org/publications/journals/aiche-journal,3xx,200,aiche.org,25.0
-0001-2092,False,False,True,True,AORN Journal,Wiley Blackwell (John Wiley & Sons),http://www.aorn.org/AORNJournal/,,0001-2092,1878-0369,12413.0,True,False,True,607.0,http://www.aorn.org/AORNJournal/,301.0,200.0,https://www.aorn.org/aorn-journal,3xx,200,aorn.org,0.0
-0001-2343,False,False,True,True,Archiv fuer Rechts- und Sozialphilosphie,Franz Steiner Verlag GmbH,http://www.steiner-verlag.de/programm/zeitschriften/archiv-fuer-rechts-und-sozialphilosophie/,,0001-2343,2363-5614,14.0,True,False,False,2.0,http://www.steiner-verlag.de/programm/zeitschriften/archiv-fuer-rechts-und-sozialphilosophie/,200.0,200.0,http://www.steiner-verlag.de/programm/zeitschriften/archiv-fuer-rechts-und-sozialphilosophie/,200,200,steiner-verlag.de,226.0
-0001-2351,False,False,True,True,Transactions of the ASAE,American Society of Agricultural and Biological Engineers,,,0001-2351,2151-0059,11515.0,True,False,True,3.0,,,,,,,,0.0
-0001-2491,False,False,True,False,ASHRAE Journal,,http://www.ashrae.org/,,0001-2491,1943-6637,0.0,False,False,False,,http://www.ashrae.org/,301.0,200.0,https://www.ashrae.org/,3xx,200,ashrae.org,684.0
-0001-2505,False,False,True,False,ASHRAE Transactions,,http://www.ashrae.org/template/AssetDetail/assetid/25903,,0001-2505,,0.0,False,False,False,,http://www.ashrae.org/template/AssetDetail/assetid/25903,301.0,404.0,https://www.ashrae.org/template/AssetDetail/assetid/25903,3xx,404,ashrae.org,684.0
diff --git a/python/tests/files/journal_metadata.sample.json b/python/tests/files/journal_metadata.sample.json
new file mode 100644
index 00000000..56df2ea1
--- /dev/null
+++ b/python/tests/files/journal_metadata.sample.json
@@ -0,0 +1,20 @@
+{"publisher": "Peter Lang International Academic Publishers", "sherpa_romeo": {"color": "yellow"}, "name": "Monographs in Linguistics and the Philosophy of Language", "issnp": "1056-5019", "issnl": "1056-5019"}
+{"ia": {"homepage_url": "http://arjournals.annualreviews.org/loi/pharmtox", "homepage_status": -1}, "issnp": "0362-1642", "issne": "1545-4304", "urls": ["http://arjournals.annualreviews.org/loi/pharmtox"], "publisher": "Annual Reviews", "kbart": {"portico": {"year_spans": [[2011, 2017]]}}, "country": "us", "abbrev": "Annu. Rev. Pharmacol. Toxicol.", "crossref": {"any": true, "doi": "10.1146/pharmtox.711"}, "languages": ["en"], "issnl": "0362-1642", "name": "Annual Review of Pharmacology and Toxicology", "sherpa_romeo": {"color": "yellow"}, "norwegian": {"level": 1, "as_of": "2018-03-02", "id": 437839}, "sim": {"last_year": 2009, "id": "5091", "year_spans": [[1961, 2009]], "first_year": 1961}}
+{"name": "The international journal of applied radiation and isotopes", "issnp": "0020-708X", "issne": "1878-1284", "publisher": "Elsevier", "kbart": {"clockss": {"year_spans": [[1957, 1985]]}, "portico": {"year_spans": [[1956, 1985]]}}, "norwegian": {"level": 1, "as_of": "2018-03-02", "id": 447572}, "abbrev": "Int J Appl Radiat Isot", "crossref": {"any": true}, "issnl": "0020-708X"}
+{"issnp": "2449-8920", "issne": "2449-8939", "road": {"as_of": "2018-01-24"}, "languages": ["en"], "publisher": "Uniwersytet Jagiellonski \u2013 Wydawnictwo Uniwersytetu Jagiellonskiego", "country": "pl", "urls": ["http://www.ejournals.eu/ijcm/", "http://www.ejournals.eu/ijcm"], "crossref": {"any": true}, "issnl": "2449-8920", "name": "International Journal of Contemporary Management", "norwegian": {"level": 1, "as_of": "2018-03-02", "id": 488900}, "ia": {"homepage_url": "http://www.ejournals.eu/ijcm", "homepage_status": 200}}
+{"issnp": "1976-1317", "default_license": "CC-BY-NC-ND", "road": {"as_of": "2018-01-24"}, "doaj": {"as_of": "2019-01-24", "seal": false, "archive": ["national-library"]}, "languages": ["en"], "publisher": "Elsevier", "kbart": {"clockss": {"year_spans": [[2007, 2018]]}, "portico": {"year_spans": [[2007, 2018]]}}, "country": "kr", "urls": ["http://www.journals.elsevier.com/asian-nursing-research", "http://www.asian-nursingresearch.com"], "crossref": {"any": true}, "issnl": "1976-1317", "abbrev": "Asian Nurs Res (Korean Soc Nurs Sci)", "name": "Asian Nursing Research", "sherpa_romeo": {"color": "green"}, "ia": {"homepage_url": "https://www.journals.elsevier.com/asian-nursing-research", "homepage_status": 200}, "issne": "2093-7482"}
+{"name": "Research on Managing Groups and Teams", "issnp": "1534-0856", "languages": ["en"], "ia": {"homepage_url": "http://www.emeraldinsight.com/series/rmgt", "homepage_status": -1}, "country": "us", "urls": ["http://www.emeraldinsight.com/series/rmgt"], "norwegian": {"level": 1, "as_of": "2018-03-02", "id": 484721}, "issnl": "1534-0856"}
+{"name": "Asian Journal of Medical Sciences", "issne": "2091-0576", "road": {"as_of": "2018-01-24"}, "languages": ["en"], "publisher": "Manipal Colleges of Medical Sciences", "ia": {"homepage_url": "https://www.nepjol.info/index.php/AJMS", "homepage_status": 200}, "country": "np", "urls": ["http://www.nepjol.info/index.php/AJMS/about", "http://www.nepjol.info/index.php/AJMS"], "norwegian": {"level": 1, "as_of": "2018-03-02", "id": 478318}, "issnl": "2091-0576"}
+{"name": "ATZproduktion", "issnp": "1865-4908", "issne": "2192-8886", "publisher": "Springer Fachmedien Wiesbaden GmbH", "crossref": {"any": true}, "issnl": "1865-4908"}
+{"publisher": "Boom Uitgevers Den Haag", "name": "StAB", "issnp": "1573-806X", "crossref": {"any": true}, "issnl": "1573-806X"}
+{"publisher": "University of Victoria", "sherpa_romeo": {"color": "blue"}, "name": "Musicological Explorations", "issnp": "1711-9235", "issnl": "1711-9235"}
+{"publisher": "Transstellar Journal Publications and Research Consultancy Private Limited", "name": "International Journal of Robotics Research and Development", "issnp": "2250-1592", "crossref": {"any": true}, "issnl": "2250-1592"}
+{"name": "BioProcess international", "issnp": "1542-6319", "abbrev": "Bioprocess Int", "issne": "1945-7065", "issnl": "1542-6319"}
+{"name": "Journal of the American Podiatry Association", "issnp": "0003-0538", "abbrev": "J Am Podiatry Assoc", "issnl": "0003-0538"}
+{"publisher": "Masson Editeur", "name": "Bulletin de la Societe francaise de dermatologie et de syphiligraphie", "languages": ["en"], "sim": {"last_year": 1972, "id": "3407", "year_spans": [[1890, 1941], [1968, 1972]], "gaps": [1942, 1943, 1944, 1945, 1946, 1947, 1948, 1949, 1950, 1951, 1952, 1953, 1954, 1955, 1956, 1957, 1958, 1959, 1960, 1961, 1962, 1963, 1964, 1965, 1966, 1967], "first_year": 1890}, "issnl": "0049-1071"}
+{"name": "International journal of innovative and applied research", "urls": ["http://www.journalijiar.com"], "ia": {"homepage_url": "http://www.journalijiar.com/", "homepage_status": 200}, "road": {"as_of": "2018-01-24"}, "issnl": "2348-0319"}
+{"issnp": "1025-6415", "issne": "1025-6415", "road": {"as_of": "2018-01-24"}, "languages": ["ru"], "publisher": "Natsional'na Akademiya Nauk Ukrainy", "abbrev": "Dopov Natsionalnoi Akad Nauk Ukr Matemat Pryrodoznavstvo Tekhnichni Nauky", "country": "ua", "urls": ["http://www.nbuv.gov.ua/portal/all/reports/index.html", "http://dopovidi-nanu.org.ua/"], "crossref": {"any": true, "doi": "10.15407/dopovidi"}, "issnl": "1025-6415", "name": "Natsional'na Akademiya Nauk Ukrainy. Dopovidi: naukovyi zhurnal", "norwegian": {"level": 1, "as_of": "2018-03-02", "id": 477246}, "ia": {"homepage_url": "http://dopovidi-nanu.org.ua/", "homepage_status": 200}}
+{"publisher": "International Bee Research Association", "name": "Journal of ApiProduct and ApiMedical Science", "crossref": {"any": true, "doi": "10.3896/IBRA.4"}, "issne": "1759-7986", "issnl": "1759-7986"}
+{"publisher": "E3 Journals Ltd", "name": "E3 Journal of Agricultural Research and Development", "crossref": {"any": true, "doi": "10.18685/EJARD"}, "issne": "2276-9897", "issnl": "2276-9897"}
+{"name": "Tung wu hsueh tsa chih : Dongwuxue zazhi", "issnp": "0250-3263", "abbrev": "Dongwuxue Zazhi", "issnl": "0250-3263"}
+{"name": "Buca e\u011fitim fak\u00fcltesi dergisi (Online)", "urls": ["http://www.befjournal.com/index.php/dergi/index"], "ia": {"homepage_url": "http://www.befjournal.com/cgi-sys/suspendedpage.cgi", "homepage_status": 200}, "road": {"as_of": "2018-01-24"}, "issnl": "1302-5147"}
diff --git a/python/tests/import_journal_metadata.py b/python/tests/import_journal_metadata.py
index a2b10a65..cfeee517 100644
--- a/python/tests/import_journal_metadata.py
+++ b/python/tests/import_journal_metadata.py
@@ -1,6 +1,6 @@
import pytest
-from fatcat_tools.importers import JournalMetadataImporter, CsvPusher
+from fatcat_tools.importers import JournalMetadataImporter, JsonLinePusher
from fixtures import api
@@ -10,15 +10,15 @@ def journal_metadata_importer(api):
# TODO: use API to check that entities actually created...
def test_journal_metadata_importer_batch(journal_metadata_importer):
- with open('tests/files/journal_extra_metadata.snip.csv', 'r') as f:
- CsvPusher(journal_metadata_importer, f).run()
+ with open('tests/files/journal_metadata.sample.json', 'r') as f:
+ JsonLinePusher(journal_metadata_importer, f).run()
def test_journal_metadata_importer(journal_metadata_importer):
last_index = journal_metadata_importer.api.get_changelog(limit=1)[0].index
- with open('tests/files/journal_extra_metadata.snip.csv', 'r') as f:
+ with open('tests/files/journal_metadata.sample.json', 'r') as f:
journal_metadata_importer.bezerk_mode = True
- counts = CsvPusher(journal_metadata_importer, f).run()
- assert counts['insert'] == 9
+ counts = JsonLinePusher(journal_metadata_importer, f).run()
+ assert counts['insert'] == 20
assert counts['exists'] == 0
assert counts['skip'] == 0
@@ -30,10 +30,10 @@ def test_journal_metadata_importer(journal_metadata_importer):
assert eg.extra['git_rev']
assert "fatcat_tools.JournalMetadataImporter" in eg.extra['agent']
- with open('tests/files/journal_extra_metadata.snip.csv', 'r') as f:
+ with open('tests/files/journal_metadata.sample.json', 'r') as f:
journal_metadata_importer.reset()
journal_metadata_importer.bezerk_mode = False
- counts = CsvPusher(journal_metadata_importer, f).run()
+ counts = JsonLinePusher(journal_metadata_importer, f).run()
assert counts['insert'] == 0
- assert counts['exists'] == 9
+ assert counts['exists'] == 20
assert counts['skip'] == 0