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author | Bryan Newbold <bnewbold@robocracy.org> | 2020-12-17 01:55:30 -0800 |
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committer | Bryan Newbold <bnewbold@robocracy.org> | 2020-12-17 23:03:08 -0800 |
commit | 58ff361eb481bee9d2ef7249f48f94729d2a830d (patch) | |
tree | 9cbcbcf1c7eafa958c81d18fcf5b6a5d27f2f42d /python/tests | |
parent | b2f53077bd05a536b5fdb551755a559b653421d3 (diff) | |
download | fatcat-58ff361eb481bee9d2ef7249f48f94729d2a830d.tar.gz fatcat-58ff361eb481bee9d2ef7249f48f94729d2a830d.zip |
very simple dblp container importer
Diffstat (limited to 'python/tests')
-rw-r--r-- | python/tests/files/ISSN-to-ISSN-L.snip.txt | 1 | ||||
-rw-r--r-- | python/tests/files/dblp_container_map.tsv | 10 | ||||
-rw-r--r-- | python/tests/files/example_dblp_containers.json | 10 | ||||
-rw-r--r-- | python/tests/import_dblp.py | 61 |
4 files changed, 77 insertions, 5 deletions
diff --git a/python/tests/files/ISSN-to-ISSN-L.snip.txt b/python/tests/files/ISSN-to-ISSN-L.snip.txt index c97de279..2569c443 100644 --- a/python/tests/files/ISSN-to-ISSN-L.snip.txt +++ b/python/tests/files/ISSN-to-ISSN-L.snip.txt @@ -8,3 +8,4 @@ ISSN ISSN-L 0000-0094 0002-0094 0000-0108 0002-0108 0000-0140 0002-0140 +1877-3273 1877-3273 diff --git a/python/tests/files/dblp_container_map.tsv b/python/tests/files/dblp_container_map.tsv new file mode 100644 index 00000000..5f3dbacd --- /dev/null +++ b/python/tests/files/dblp_container_map.tsv @@ -0,0 +1,10 @@ +dblp_prefix container_id +series/atlantis 7xuzjpmxqnaq7enf3qc45diflu +series/apc ktlimnolmvbwbhthlj66zuooea +series/swb s2qx5lvrdngvrk6y2arrem3qom +series/sbece 7g52v6peqrek5l7zmstisnpkdm +series/wssris iszwbitlzfau5k77dpqifz5tf4 +series/lnm r436k67l3fdm5cgs5hqif5e7hi +conf/focs aaaaaaaaaaaaaeiraaaaaaaaai +conf/er aaaaaaaaaaaaaeiraaaaaaaaai +journals/cacm aaaaaaaaaaaaaeiraaaaaaaaai diff --git a/python/tests/files/example_dblp_containers.json b/python/tests/files/example_dblp_containers.json new file mode 100644 index 00000000..c5137604 --- /dev/null +++ b/python/tests/files/example_dblp_containers.json @@ -0,0 +1,10 @@ +{"homepage_url": "http://link.springer.com/bookseries/10077", "issns": ["1877-3273"], "key": "series/atlantis", "title": "Atlantis Thinking Machines"} +{"homepage_url": "http://ebooks.iospress.nl/bookseries/advances-in-parallel-computing", "issns": ["0927-5452", "1879-808X"], "key": "series/apc", "title": "Advances in Parallel Computing"} +{"homepage_url": "http://link.springer.com/bookseries/7056", "issns": ["1559-7474"], "key": "series/swb", "title": "Semantic Web and Beyond: Computing for Human Experience"} +{"homepage_url": "http://link.springer.com/bookseries/10059", "issns": ["2191-8112"], "key": "series/sbece", "title": "Springer Briefs in Electrical and Computer Engineering"} +{"homepage_url": "http://www.worldscientific.com/series/wssris", "issns": [], "key": "series/wssris", "title": "World Scientific Series in Robotics and Intelligent Systems"} +{"acronym": "LNM", "homepage_url": "http://link.springer.com/bookseries/304", "issns": ["0075-8434"], "key": "series/lnm", "title": "Lecture Notes in Mathematics"} +{"homepage_url": "https://www.usenix.org/lisa", "issns": [], "key": "series/sage", "title": "Short Topics in System Administration"} +{"homepage_url": "http://link.springer.com/bookseries/4205", "issns": ["2191-6586", "2191-6594"], "key": "series/acvpr", "title": "Advances in Computer Vision and Pattern Recognition"} +{"acronym": "STAR", "homepage_url": "http://link.springer.com/bookseries/5208", "issns": ["1610-7438", "1610-742X"], "key": "series/star", "title": "Springer Tracts in Advanced Robotics"} +{"acronym": "FAIA", "homepage_url": "http://ebooks.iospress.nl/bookseries/frontiers-in-artificial-intelligence-and-applications", "issns": ["0922-6389", "1879-8314"], "key": "series/faia", "title": "Frontiers in Artificial Intelligence and Applications"} diff --git a/python/tests/import_dblp.py b/python/tests/import_dblp.py index fd40eb06..5041b509 100644 --- a/python/tests/import_dblp.py +++ b/python/tests/import_dblp.py @@ -1,8 +1,9 @@ +import io import pytest from bs4 import BeautifulSoup -from fatcat_tools.importers import DblpReleaseImporter, Bs4XmlLargeFilePusher +from fatcat_tools.importers import DblpReleaseImporter, DblpContainerImporter, Bs4XmlLargeFilePusher, JsonLinePusher from fixtures import * @@ -13,15 +14,21 @@ def dblp_importer(api): @pytest.fixture(scope="function") def dblp_importer_existing(api): - with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file: - yield DblpReleaseImporter(api, issn_file, bezerk_mode=False, lookup_refs=True) + with open('tests/files/dblp_container_map.tsv', 'r') as tsv_file: + yield DblpReleaseImporter(api, tsv_file, bezerk_mode=False) + +@pytest.fixture(scope="function") +def dblp_container_importer(api): + with open('tests/files/dblp_container_map.tsv', 'r') as tsv_file: + with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file: + yield DblpContainerImporter(api, issn_file, tsv_file, io.StringIO(), bezerk_mode=True) def test_dblp_importer(dblp_importer): last_index = dblp_importer.api.get_changelog(limit=1)[0].index with open('tests/files/example_dblp.xml', 'rb') as f: dblp_importer.bezerk_mode = True counts = Bs4XmlLargeFilePusher(dblp_importer, f, dblp_importer.ELEMENT_TYPES, use_lxml=True).run() - print(counts) + #print(counts) assert counts['insert'] == 3 assert counts['exists'] == 0 assert counts['skip'] == 1 @@ -44,12 +51,56 @@ def test_dblp_importer(dblp_importer): dblp_importer.bezerk_mode = False dblp_importer.reset() counts = Bs4XmlLargeFilePusher(dblp_importer, f, dblp_importer.ELEMENT_TYPES, use_lxml=True).run() - print(counts) + #print(counts) assert counts['insert'] == 0 assert counts['exists'] == 3 assert counts['skip'] == 1 assert last_index == dblp_importer.api.get_changelog(limit=1)[0].index +def test_dblp_container_importer(dblp_container_importer): + last_index = dblp_container_importer.api.get_changelog(limit=1)[0].index + output_tsv_map = io.StringIO() + with open('tests/files/example_dblp_containers.json', 'r') as f: + dblp_container_importer.bezerk_mode = True + dblp_container_importer.dblp_container_map_output = output_tsv_map + counts = JsonLinePusher(dblp_container_importer, f).run() + assert counts['insert'] == 10 + assert counts['exists'] == 0 + assert counts['skip'] == 0 + + # fetch most recent editgroup + change = dblp_container_importer.api.get_changelog_entry(index=last_index+1) + eg = change.editgroup + assert eg.description + assert "dblp" in eg.description.lower() + assert eg.extra['git_rev'] + assert "fatcat_tools.DblpContainerImporter" in eg.extra['agent'] + + # check that entity name mangling was fixed on import + eg = dblp_container_importer.api.get_editgroup(eg.editgroup_id) + container = dblp_container_importer.api.get_container(eg.edits.containers[0].ident) + assert container.name == "Atlantis Thinking Machines" + assert container.issnl == "1877-3273" + assert container.container_type == "book-series" + assert container.extra['dblp']['prefix'] == "series/atlantis" + assert container.extra['urls'] == ["http://link.springer.com/bookseries/10077"] + + last_index = dblp_container_importer.api.get_changelog(limit=1)[0].index + output_tsv_map.seek(0) + print(output_tsv_map.read()) + output_tsv_map.seek(0) + with open('tests/files/example_dblp_containers.json', 'r') as f: + dblp_container_importer.reset() + dblp_container_importer.bezerk_mode = False + dblp_container_importer.dblp_container_map_output = io.StringIO() + dblp_container_importer.read_dblp_container_map_file(output_tsv_map) + counts = JsonLinePusher(dblp_container_importer, f).run() + print(counts) + assert counts['insert'] == 0 + assert counts['exists'] == 10 + assert counts['skip'] == 0 + assert last_index == dblp_container_importer.api.get_changelog(limit=1)[0].index + def test_dblp_xml_parse(dblp_importer): with open('tests/files/example_dblp_article.xml', 'r') as f: soup = BeautifulSoup(f, "xml") |