improvements to grobid_metadata importer

But still fails tests due to database collision/side-effect on sha1
lookup.

1 files changed, 10 insertions, 0 deletions

diff --git a/python/tests/files/example_grobid_metadata_lines.tsv b/python/tests/files/example_grobid_metadata_lines.tsv
new file mode 100644
index 00000000..75ec75ea
--- /dev/null
+++ b/python/tests/files/example_grobid_metadata_lines.tsv
@@ -0,0 +1,10 @@
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The research used experimental method, was conducted from January to May 2010. Population was all students at grade VII SMP 2 Girisubo academic year 2009/2010 that consisted of four classes. Sample was taken using cluster random sampling technique and consisted of two classes. The fist class was treated using virtual demonstration and second class was treated real demonstration. The data was collected using test for students achievement, and questioner for students motivation and thinking style, and observation sheet for students affective achievements. The research hypotheses was tested using ANOVA with 2x2x2 factorial design and calculated with software minitab 15. From data analysis can be concluded that: (1) there is no effects of learning media toward students cognitive (p value = 0.618) and affective (p value = 0.822) achievement, (2) there is an effect students high motivation towards cognitive (p value = 0.000) and affective (p value = 0.008) achievement, (3) there is no effect of concrete and abstract thinking styles toward students cognitive (p value = 0.233) and affective (p value = 0.233) achievement, (4) There is no interactions between the learning media and students motivation toward (p value = 0.365) but there is interaction between the learning media and the motivation toward affective (p value = 0.037) achievement, (5) there is no interaction between the learning media and students thinking styles toward cognitive (p value = 0.112) and affective (p value = 0.256) achievement, (6) there is interaction between motivation and students thinking style toward cognitive (p value = 0.042) but there is no interaction between motivation and students thinking styles on affective (p value = 0.780) achievement, (7) There are no interactions among", "authors": [{"name": "Wahyu Ary"}, {"name": "Guru Kurnianto"}, {"name": "Smpn"}, {"name": "Gunung Girisubo"}, {"name": "Jogjakarta Kidul"}], "citations": [{"index": 0, "publisher": null, "volume": null, "title": "IPA Terpadu untuk Kelas VII SMP/MTs. 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Bandung: CV Maulana", "id": "b14", "date": "2001", "issue": null, "authors": [{"name": "Mulyani Sumantri"}, {"name": "& Johan Permana"}], "url": null, "journal": null}, {"index": 15, "publisher": null, "volume": null, "title": "Pembelajaran Kontekstual dan Penerapannya dalam KBK", "id": "b15", "date": "2004", "issue": null, "authors": [{"name": "Dkk Nurhadi"}], "url": null, "journal": null}, {"index": 16, "publisher": null, "volume": null, "title": "Filsafat Konstruktivisme Dalam Pendidikan", "id": "b16", "date": "1997", "issue": null, "authors": [{"name": "Paul Suparno"}], "url": null, "journal": null}, {"index": 17, "publisher": null, "volume": null, "title": "Pembelajaran Fisika Menggunakan Metode Demonstrasi Dengan Observasi Langsung dan Visualisasi Ditinjau Dari Kemampuan Spasial Siswa", "id": "b17", "date": "2009", "issue": null, "authors": [{"name": "Ponimin"}], "url": null, "journal": null}, {"index": 18, "publisher": null, "volume": null, "title": "Interaksi Belajar Mengajar IPA", "id": "b18", "date": "1988", "issue": null, "authors": [{"name": "Ratna Wilis Dahar"}], "url": null, "journal": null}, {"index": 19, "publisher": null, "volume": null, "title": "Strategi Belajar Mengajar. 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Jakarta: Rineka Cipta", "id": "b24", "date": "1995", "issue": null, "authors": [{"name": "Slameto"}], "url": null, "journal": null}, {"index": 25, "publisher": null, "volume": null, "title": "IPA Terpadu untuk SMP Kelas VII", "id": "b25", "date": "2007", "issue": null, "authors": [{"name": "Tim Guru"}], "url": null, "journal": null}, {"index": 26, "publisher": null, "volume": null, "title": "Psikologi Pengajaran. Jakarta: Gramedia", "id": "b26", "date": "1987", "issue": null, "authors": [{"name": "W Winkel"}], "url": null, "journal": null}], "journal": {"issn": null, "publisher": null, "volume": "6", "eissn": null, "issue": "1", "name": null}, "acknowledgement": null}
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Objectives: The objective of this research was to determine whether at random transposon mutagenesis could be applied in genetic studies of Rhizobium japonicum. One major reason for this is that a range of defined mutations is not available. Methods: In present study R. japonicum at frequencies sufficient to allow the isolation of large numbers of insertion mutants. The selection of Tn5 mutants was facilitated by the expression, in all the R. japonicum strains we have tested, of the Tn5 encoded kanamycin resistance. A number of auxotrophic and symbiotically defective, single, random transposon (Tn5) mutants were obtained in three slow-growing strains of different DNA homology and serogroups and the single fast growing strain of R. japonicum. Conclusions: In conclusion, the Tn5 can be used as a generalized mutagen to isolate a variety of mutants with defects in symbiotic nitrogen fixation. 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Gen. Microbiol"}, {"index": 8, "publisher": null, "volume": "187", "title": "Coding properties of cloned nitrogenase structural genes from Rhizobium japonicum", "id": "b8", "date": "1982", "issue": null, "authors": [{"name": "M Fuhrmann"}, {"name": "H Hennecke"}], "url": null, "journal": "Mol Gen Genet"}, {"index": 9, "publisher": null, "volume": "187", "title": "Coding properties of cloned nitrogenase structural genes from Rhizobium japonicum", "id": "b9", "date": "1982", "issue": null, "authors": [{"name": "M Fuhrmann"}, {"name": "H Hennecke"}], "url": null, "journal": "Mol Gen Genet"}, {"index": 10, "publisher": null, "volume": "193", "title": "Localized mutagenesis in Rhizobium japonicum", "id": "b10", "date": "1984", "issue": null, "authors": [{"name": "M Hahn"}, {"name": "H Hennecke"}], "url": null, "journal": "Mol Gen Genet"}], "journal": {"issn": null, "publisher": null, "volume": "3", "eissn": null, "issue": "2", "name": "International Journal of Advanced Science and Research International Journal of Advanced Science and Research"}, "acknowledgement": null}
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Hydrogen Energy"}, {"index": 5, "publisher": null, "volume": null, "title": "Optimum plasma states for next step tokamaks", "id": "b5", "date": "2002", "issue": null, "authors": [{"name": "Y Lin-Liu"}, {"name": "R Stambaugh"}], "url": null, "journal": "General Atomics Report"}, {"index": 6, "publisher": null, "volume": null, "title": "Unified ideal stability limits for advanced tokamak and spherical torus plasmas, Princeton Plasma Physics Laboratory Report", "id": "b6", "date": "2003", "issue": null, "authors": [{"name": "J Menard"}, {"name": "M Bell"}, {"name": "R Bell"}, {"name": "D Gates"}, {"name": "S Kaye"}, {"name": "B Leblanc"}, {"name": "S Sabbagh"}, {"name": "E Fredrickson"}, {"name": "S Jardin"}, {"name": "R Maingi"}, {"name": "J Manickam"}, {"name": "D Mueller"}, {"name": "M Ono"}, {"name": "F Paoletti"}, {"name": "Y.-K Peng"}, {"name": "V Soukhanovskii"}, {"name": "D Stutman"}, {"name": "E Synakowski"}], "url": null, "journal": null}, {"index": 7, "publisher": null, "volume": "22", "title": "The ITER Magnets: Design and Construction Status", "id": "b7", "date": "2012", "issue": null, "authors": [{"name": "N Mitchell"}, {"name": "A Devred"}, {"name": "P Libeyre"}], "url": null, "journal": "IEEE Transactions on Applied Superconductivity"}, {"index": 8, "publisher": null, "volume": null, "title": "Fusion Eng. 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Des", "id": "b10", "date": "2006", "issue": null, "authors": [{"name": "T Nishitani"}, {"name": "M Yamauchi"}, {"name": "S Nishio"}, {"name": "M Wada"}], "url": null, "journal": null}, {"index": 11, "publisher": null, "volume": null, "title": "ORNL", "id": "b11", "date": "1998", "issue": null, "authors": [], "url": null, "journal": null}, {"index": 12, "publisher": null, "volume": "42", "title": "Status of Pyroprocessing Technology Development in Korea", "id": "b12", "date": "2010", "issue": null, "authors": [{"name": "K Song"}, {"name": "H Lee"}, {"name": "J-M Hur"}, {"name": "J Kim"}, {"name": "D Ahn"}, {"name": "Y Cho"}], "url": null, "journal": "Nuclear Engineering and Technology"}, {"index": 13, "publisher": null, "volume": "82", "title": "Transmutation missions for fusion neutron sources", "id": "b13", "date": "2007", "issue": null, "authors": [{"name": "W Stacey"}], "url": null, "journal": "Fusion Engineering and Design"}, {"index": 14, "publisher": null, "volume": "42", "title": "Toroidal reactor designs as a function of aspect ratio and elongation", "id": "b14", "date": "2002", "issue": null, "authors": [{"name": "C Wong"}, {"name": "J Wesley"}, {"name": "R Stambaugh"}, {"name": "E Cheng"}], "url": null, "journal": "Nucl. 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Extracts prepared using crude solvents exhibited higher antifungal activity as compared to their corresponding aqueous extracts. No good activity was observed in the aqueous extract. The pathogen inhibiting activity was found to be dose dependent. The preliminary phytochemical screening of the leaves revealed the presence of Alkaloids, Flavonols, Flavones, Flavanols, Saponins and Steroids.", "authors": [{"name": "Research Article"}, {"name": "Sweta Prakash"}, {"name": "Ashok Jain"}], "citations": [{"index": 0, "publisher": null, "volume": "18", "title": "A phytochemical survey of Malaya-III, Alkaloids and saponins", "id": "b0", "date": "1964", "issue": null, "authors": [{"name": "R Amarsingham"}, {"name": "N G Bisset"}, {"name": "A Millard"}, {"name": "M C Woods"}], "url": null, "journal": "Economic Botany"}, {"index": 1, "publisher": null, "volume": "63", "title": "Possible Industrial application of genus Solanum in twenty first century-A review", "id": "b1", "date": "2004", "issue": null, "authors": [{"name": "M Amir"}, {"name": "S Kumar"}], "url": null, "journal": "Journal of Scientific and Industrial Research"}, {"index": 2, "publisher": null, "volume": "96", "title": "The relationship between the volume of antimicrobial consumption in human communities and the frequency of resistance", "id": "b2", "date": "1999", "issue": null, "authors": [{"name": "D J Austin"}, {"name": "K Kristinsson"}, {"name": "Anderson R M"}], "url": null, "journal": "Proc Natl Acad Sci"}, {"index": 3, "publisher": null, "volume": null, "title": "Antibacterial activity of Solanum trilobatum", "id": "b3", "date": "0211", "issue": null, "authors": [{"name": "K Balakrishna"}, {"name": "G Veluchamy"}, {"name": "P Ragothaman"}, {"name": "G Sajan"}], "url": null, "journal": "Proceeding of International Congress on Ayurveda"}, {"index": 4, "publisher": null, "volume": null, "title": "Handbook of Medicinal Plants", "id": "b4", "date": "2001", "issue": null, "authors": [{"name": "S Bhattacharjee"}], "url": null, "journal": null}, {"index": 5, "publisher": null, "volume": "20", "title": "Phytochemical screening of some plants of Indian Botanical garden", "id": "b5", "date": "1978", "issue": "1-4", "authors": [{"name": "S S Dan"}, {"name": "N R Mondal"}, {"name": "S Das"}], "url": null, "journal": "Bulletin of Botanical Survey of India"}, {"index": 6, "publisher": null, "volume": "4", "title": "Phytochemical constituent of some Nigerian medicinal plants", "id": "b6", "date": "2005", "issue": "7", "authors": [{"name": "H O Edeoga"}, {"name": "D Okwu"}, {"name": "B O Mbacbie"}], "url": null, "journal": "African Journal of Biotechnology"}, {"index": 7, "publisher": null, "volume": null, "title": "Phtochemical screening of some species of Iranian plants", "id": "b7", "date": "2003", "issue": null, "authors": [{"name": "M Faraz"}, {"name": "K Mohammed"}, {"name": "G Naysanet"}, {"name": "H R Vahidipour"}], "url": null, "journal": "Iranian Journal of Pharmaceutical Research"}, {"index": 8, "publisher": null, "volume": "2", "title": "African indigenous plants with chemotherapeutic potentials and biotechnological approach to the production of bioactive prophylactic agents", "id": "b8", "date": "2003", "issue": null, "authors": [{"name": "E O Farombi"}], "url": null, "journal": "African Journal of Biotechnology"}, {"index": 9, "publisher": null, "volume": "61", "title": "The cellulolytic activity of thermophilic fungi", "id": "b9", "date": "1969", "issue": null, "authors": [{"name": "C Fergus"}], "url": null, "journal": "Mycology"}, {"index": 10, "publisher": null, "volume": null, "title": "Chemotaxonomy of flowering plants. I-IV", "id": "b10", "date": "1974", "issue": null, "authors": [{"name": "R Gibbs"}], "url": null, "journal": null}, {"index": 11, "publisher": null, "volume": "84", "title": "Traditional herbal drugs of southern Uganda, II. Literature analysis and antimicrobial assays", "id": "b11", "date": "2003", "issue": null, "authors": [{"name": "F A Hamil"}, {"name": "S Apio"}, {"name": "N K Mubiru"}, {"name": "R Bukenya-Ziruba"}, {"name": "Mosanyo"}, {"name": "M"}, {"name": "Magangi Owe"}], "url": null, "journal": "Journal of Ethnopharmacology"}, {"index": 12, "publisher": null, "volume": null, "title": "Phytochemical methods. A guide to modern techniques of plant analysis", "id": "b12", "date": "1984", "issue": null, "authors": [{"name": "J Harborne"}], "url": null, "journal": null}, {"index": 13, "publisher": null, "volume": "48", "title": "Steroidal oligoglycosides from Solanum nigrum. Chemical and Pharmaceutical Bulletin", "id": "b13", "date": "2000", "issue": "7", "authors": [{"name": "T Ikeda"}, {"name": "H Tsumagari"}, {"name": "H Nohara"}, {"name": "T Nohara"}], "url": null, "journal": null}, {"index": 14, "publisher": null, "volume": "39", "title": "Screening of some medicinal plants for isolation of antifungal proteins and peptides", "id": "b14", "date": "2007", "issue": "1", "authors": [{"name": "A Jamil"}, {"name": "S Muhommad"}, {"name": "Masud-Ul-Haq"}, {"name": "M Khan"}, {"name": "A Muhammad"}], "url": null, "journal": "Pakistan Journal of Botany"}, {"index": 15, "publisher": null, "volume": "11", "title": "Phytochemical screening of some folklore medicinal plants for their anti-inflammatory activity", "id": "b15", "date": "2007", "issue": null, "authors": [{"name": "D Juneja"}, {"name": "P N Shrivastava"}, {"name": "M K Guha"}, {"name": "R C Saxena"}], "url": null, "journal": "Pharmacognosy Magazine"}, {"index": 16, "publisher": null, "volume": "45", "title": "Invitro antimicrobial activity of bakuchiol against oral microorganisms", "id": "b16", "date": "2001", "issue": null, "authors": [{"name": "H Katsura"}, {"name": "Sukiyama"}, {"name": "A Suzuki"}, {"name": "M Kobayashi"}], "url": null, "journal": "Antimicrobial agents & Chemotherapy. 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The role of Traditional knowledge in Health care and Agriculture", "id": "b26", "date": "2004", "issue": null, "authors": [{"name": "X Zhang"}], "url": null, "journal": "United nations"}], "journal": {"issn": null, "publisher": null, "volume": null, "eissn": null, "issue": null, "name": null}, "acknowledgement": null}
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It is, therefore, necessary to have an excitable oscillatory system on which the phenomenon of taste can be mimicked. In a recent study, it has been shown that the hydrodynamic oscillator is a good candidate for mimicking the sensing mechanism of taste. It was argued that the hydrodynamic oscillator could be viewed as an analogue of taste buds and the amplitude of electrical potential oscillations in the hydrodynamic oscillator, using a taste stimulant, as an analogue of the receptor potential. The amplitudes of the electrical potential oscillations in the hydrodynamic oscillator were shown to correlate well with the logarithms of the relatives taste indices (The intensitites of taste sensations within a particular taste category are measured by their relative taste indices), concentration, etc. of the substances belonging to different taste categories, and it appears that hydrodynamic oscillator can be used as possible artificial taste sensing device.", "authors": [{"name": "Amlan Das"}], "citations": [{"index": 0, "publisher": null, "volume": null, "title": "Fundamentals of sensory physiology", "id": "b0", "date": "1966", "issue": null, "authors": [{"name": "R Schimdt"}], "url": null, "journal": null}, {"index": 1, "publisher": null, "volume": null, "title": "Neurobiology of taste and smell", "id": "b1", "date": "1987", "issue": null, "authors": [{"name": "T Finger & W"}, {"name": "Silver"}], "url": null, "journal": null}, {"index": 2, "publisher": null, "volume": "105", "title": "J. 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