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authorMartin Czygan <martin.czygan@gmail.com>2020-01-02 17:35:54 +0100
committerMartin Czygan <martin.czygan@gmail.com>2020-01-02 17:35:54 +0100
commit96e38edde79735b4080ec08d57e9f54759e97b61 (patch)
tree2798719086819b747adab8d48adbb0c59b5ac9f5 /python/tests/files/datacite/datacite_result_05.json
parentb87ba235c0a7da15d70c5ab7fa367d7b9c1fb981 (diff)
downloadfatcat-96e38edde79735b4080ec08d57e9f54759e97b61.tar.gz
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datacite: add conversion fixtures
The `test_datacite_conversions` function will compare an input (datacite) document to an expected output (release entity as JSON). This way, it should not be too hard to add more cases by adding: input, output - and by increasing the counter in the range loop within the test. To view input and result side by side with vim, change into the test directory and run: tests/files/datacite $ ./caseview.sh 18
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+{
+ "extra": {
+ "datacite": {
+ "license": [
+ {
+ "rights": "Attribution-NonCommercial (CC BY-NC)",
+ "rightsUri": "http://creativecommons.org/licenses/by-nc/4.0"
+ }
+ ]
+ }
+ },
+ "title": "SH409843.07FU",
+ "subtitle": "Gomphales",
+ "release_type": "dataset",
+ "release_stage": "published",
+ "release_date": "2014-10-05",
+ "release_year": 2014,
+ "ext_ids": {
+ "doi": "10.15156/bio/sh409843.07fu"
+ },
+ "publisher": "UNITE Community",
+ "language": "en",
+ "license_slug": "CC-BY-NC",
+ "contribs": [
+ {
+ "index": 0,
+ "raw_name": "K\u00f5ljalg, Urmas",
+ "given_name": "Urmas",
+ "surname": "K\u00f5ljalg",
+ "role": "author"
+ },
+ {
+ "index": 1,
+ "raw_name": "Abarenkov, Kessy",
+ "given_name": "Kessy",
+ "surname": "Abarenkov",
+ "role": "author"
+ },
+ {
+ "index": 2,
+ "raw_name": "Nilsson, R. Henrik",
+ "given_name": "R. Henrik",
+ "surname": "Nilsson",
+ "role": "author"
+ },
+ {
+ "index": 3,
+ "raw_name": "Larsson, Karl-Henrik",
+ "given_name": "Karl-Henrik",
+ "surname": "Larsson",
+ "role": "author"
+ },
+ {
+ "index": 4,
+ "raw_name": "Aas, Anders Bj\u00f8rnsgard",
+ "given_name": "Anders Bj\u00f8rnsgard",
+ "surname": "Aas",
+ "role": "author"
+ },
+ {
+ "index": 5,
+ "raw_name": "Adams, Rachel",
+ "given_name": "Rachel",
+ "surname": "Adams",
+ "role": "author"
+ },
+ {
+ "index": 6,
+ "raw_name": "Alves, Artur",
+ "given_name": "Artur",
+ "surname": "Alves",
+ "role": "author"
+ },
+ {
+ "index": 7,
+ "raw_name": "Ammirati, Joseph F.",
+ "given_name": "Joseph F.",
+ "surname": "Ammirati",
+ "role": "author"
+ },
+ {
+ "index": 8,
+ "raw_name": "Arnold, A. Elizabeth",
+ "given_name": "A. Elizabeth",
+ "surname": "Arnold",
+ "role": "author"
+ },
+ {
+ "index": 9,
+ "raw_name": "Bahram, Mohammad",
+ "given_name": "Mohammad",
+ "surname": "Bahram",
+ "role": "author"
+ },
+ {
+ "index": 10,
+ "raw_name": "Bengtsson-Palme, Johan",
+ "given_name": "Johan",
+ "surname": "Bengtsson-Palme",
+ "role": "author"
+ },
+ {
+ "index": 11,
+ "raw_name": "Berlin, Anna",
+ "given_name": "Anna",
+ "surname": "Berlin",
+ "role": "author"
+ },
+ {
+ "index": 12,
+ "raw_name": "Botnen, Synn\u00f8ve",
+ "given_name": "Synn\u00f8ve",
+ "surname": "Botnen",
+ "role": "author"
+ },
+ {
+ "index": 13,
+ "raw_name": "Bourlat, Sarah",
+ "given_name": "Sarah",
+ "surname": "Bourlat",
+ "role": "author"
+ },
+ {
+ "index": 14,
+ "raw_name": "Cheeke, Tanya",
+ "given_name": "Tanya",
+ "surname": "Cheeke",
+ "role": "author"
+ },
+ {
+ "index": 15,
+ "raw_name": "Dima, B\u00e1lint",
+ "given_name": "B\u00e1lint",
+ "surname": "Dima",
+ "role": "author"
+ },
+ {
+ "index": 16,
+ "raw_name": "Drenkhan, Rein",
+ "given_name": "Rein",
+ "surname": "Drenkhan",
+ "role": "author"
+ },
+ {
+ "index": 17,
+ "raw_name": "Duarte, Camila",
+ "given_name": "Camila",
+ "surname": "Duarte",
+ "role": "author"
+ },
+ {
+ "index": 18,
+ "raw_name": "Due\u00f1as, Margarita",
+ "given_name": "Margarita",
+ "surname": "Due\u00f1as",
+ "role": "author"
+ },
+ {
+ "index": 19,
+ "raw_name": "Eberhardt, Ursula",
+ "given_name": "Ursula",
+ "surname": "Eberhardt",
+ "role": "author"
+ },
+ {
+ "index": 20,
+ "raw_name": "Friberg, Hanna",
+ "given_name": "Hanna",
+ "surname": "Friberg",
+ "role": "author"
+ },
+ {
+ "index": 21,
+ "raw_name": "Fr\u00f8slev, Tobias G.",
+ "given_name": "Tobias G.",
+ "surname": "Fr\u00f8slev",
+ "role": "author"
+ },
+ {
+ "index": 22,
+ "raw_name": "Garnica, Sigisfredo",
+ "given_name": "Sigisfredo",
+ "surname": "Garnica",
+ "role": "author"
+ },
+ {
+ "index": 23,
+ "raw_name": "Geml, J\u00f3zsef",
+ "given_name": "J\u00f3zsef",
+ "surname": "Geml",
+ "role": "author"
+ },
+ {
+ "index": 24,
+ "raw_name": "Ghobad-Nejhad, Masoomeh",
+ "given_name": "Masoomeh",
+ "surname": "Ghobad-Nejhad",
+ "role": "author"
+ },
+ {
+ "index": 25,
+ "raw_name": "Grebenc, Tine",
+ "given_name": "Tine",
+ "surname": "Grebenc",
+ "role": "author"
+ },
+ {
+ "index": 26,
+ "raw_name": "Griffith, Gareth W.",
+ "given_name": "Gareth W.",
+ "surname": "Griffith",
+ "role": "author"
+ },
+ {
+ "index": 27,
+ "raw_name": "Hampe, Felix",
+ "given_name": "Felix",
+ "surname": "Hampe",
+ "role": "author"
+ },
+ {
+ "index": 28,
+ "raw_name": "Kennedy, Peter",
+ "given_name": "Peter",
+ "surname": "Kennedy",
+ "role": "author"
+ },
+ {
+ "index": 29,
+ "raw_name": "Khomich, Maryia",
+ "given_name": "Maryia",
+ "surname": "Khomich",
+ "role": "author"
+ },
+ {
+ "index": 30,
+ "raw_name": "Kohout, Petr",
+ "given_name": "Petr",
+ "surname": "Kohout",
+ "role": "author"
+ },
+ {
+ "index": 31,
+ "raw_name": "Kollom, Anu",
+ "given_name": "Anu",
+ "surname": "Kollom",
+ "role": "author"
+ },
+ {
+ "index": 32,
+ "raw_name": "Larsson, Ellen",
+ "given_name": "Ellen",
+ "surname": "Larsson",
+ "role": "author"
+ },
+ {
+ "index": 33,
+ "raw_name": "Laszlo, Irinyi",
+ "given_name": "Irinyi",
+ "surname": "Laszlo",
+ "role": "author"
+ },
+ {
+ "index": 34,
+ "raw_name": "Leavitt, Steven",
+ "given_name": "Steven",
+ "surname": "Leavitt",
+ "role": "author"
+ },
+ {
+ "index": 35,
+ "raw_name": "Liimatainen, Kare",
+ "given_name": "Kare",
+ "surname": "Liimatainen",
+ "role": "author"
+ },
+ {
+ "index": 36,
+ "raw_name": "Lindahl, Bj\u00f6rn",
+ "given_name": "Bj\u00f6rn",
+ "surname": "Lindahl",
+ "role": "author"
+ },
+ {
+ "index": 37,
+ "raw_name": "Lodge, Deborah J.",
+ "given_name": "Deborah J.",
+ "surname": "Lodge",
+ "role": "author"
+ },
+ {
+ "index": 38,
+ "raw_name": "Lumbsch, Helge Thorsten",
+ "given_name": "Helge Thorsten",
+ "surname": "Lumbsch",
+ "role": "author"
+ },
+ {
+ "index": 39,
+ "raw_name": "Mart\u00edn Esteban, Mar\u00eda Paz",
+ "given_name": "Mar\u00eda Paz",
+ "surname": "Mart\u00edn Esteban",
+ "role": "author"
+ },
+ {
+ "index": 40,
+ "raw_name": "Meyer, Wieland",
+ "given_name": "Wieland",
+ "surname": "Meyer",
+ "role": "author"
+ },
+ {
+ "index": 41,
+ "raw_name": "Miettinen, Otto",
+ "given_name": "Otto",
+ "surname": "Miettinen",
+ "role": "author"
+ },
+ {
+ "index": 42,
+ "raw_name": "Nguyen, Nhu",
+ "given_name": "Nhu",
+ "surname": "Nguyen",
+ "role": "author"
+ },
+ {
+ "index": 43,
+ "raw_name": "Niskanen, Tuula",
+ "given_name": "Tuula",
+ "surname": "Niskanen",
+ "role": "author"
+ },
+ {
+ "index": 44,
+ "raw_name": "Oono, Ryoko",
+ "given_name": "Ryoko",
+ "surname": "Oono",
+ "role": "author"
+ },
+ {
+ "index": 45,
+ "raw_name": "\u00d6pik, Maarja",
+ "given_name": "Maarja",
+ "surname": "\u00d6pik",
+ "role": "author"
+ },
+ {
+ "index": 46,
+ "raw_name": "Ordynets, Alexander",
+ "given_name": "Alexander",
+ "surname": "Ordynets",
+ "role": "author"
+ },
+ {
+ "index": 47,
+ "raw_name": "Paw\u0142owska, Julia",
+ "given_name": "Julia",
+ "surname": "Paw\u0142owska",
+ "role": "author"
+ },
+ {
+ "index": 48,
+ "raw_name": "Peintner, Ursula",
+ "given_name": "Ursula",
+ "surname": "Peintner",
+ "role": "author"
+ },
+ {
+ "index": 49,
+ "raw_name": "Pereira, Olinto Liparini",
+ "given_name": "Olinto Liparini",
+ "surname": "Pereira",
+ "role": "author"
+ },
+ {
+ "index": 50,
+ "raw_name": "Pinho, Danilo Batista",
+ "given_name": "Danilo Batista",
+ "surname": "Pinho",
+ "role": "author"
+ },
+ {
+ "index": 51,
+ "raw_name": "P\u00f5ldmaa, Kadri",
+ "given_name": "Kadri",
+ "surname": "P\u00f5ldmaa",
+ "role": "author"
+ },
+ {
+ "index": 52,
+ "raw_name": "Runnel, Kadri",
+ "given_name": "Kadri",
+ "surname": "Runnel",
+ "role": "author"
+ },
+ {
+ "index": 53,
+ "raw_name": "Ryberg, Martin",
+ "given_name": "Martin",
+ "surname": "Ryberg",
+ "role": "author"
+ },
+ {
+ "index": 54,
+ "raw_name": "Saar, Irja",
+ "given_name": "Irja",
+ "surname": "Saar",
+ "role": "author"
+ },
+ {
+ "index": 55,
+ "raw_name": "Sanli, Kemal",
+ "given_name": "Kemal",
+ "surname": "Sanli",
+ "role": "author"
+ },
+ {
+ "index": 56,
+ "raw_name": "Scott, James",
+ "given_name": "James",
+ "surname": "Scott",
+ "role": "author"
+ },
+ {
+ "index": 57,
+ "raw_name": "Spirin, Viacheslav",
+ "given_name": "Viacheslav",
+ "surname": "Spirin",
+ "role": "author"
+ },
+ {
+ "index": 58,
+ "raw_name": "Suija, Ave",
+ "given_name": "Ave",
+ "surname": "Suija",
+ "role": "author"
+ },
+ {
+ "index": 59,
+ "raw_name": "Svantesson, Sten",
+ "given_name": "Sten",
+ "surname": "Svantesson",
+ "role": "author"
+ },
+ {
+ "index": 60,
+ "raw_name": "Tadych, Mariusz",
+ "given_name": "Mariusz",
+ "surname": "Tadych",
+ "role": "author"
+ },
+ {
+ "index": 61,
+ "raw_name": "Takamatsu, Susumu",
+ "given_name": "Susumu",
+ "surname": "Takamatsu",
+ "role": "author"
+ },
+ {
+ "index": 62,
+ "raw_name": "Tamm, Heidi",
+ "given_name": "Heidi",
+ "surname": "Tamm",
+ "role": "author"
+ },
+ {
+ "index": 63,
+ "raw_name": "Taylor, AFS.",
+ "given_name": "AFS.",
+ "surname": "Taylor",
+ "role": "author"
+ },
+ {
+ "index": 64,
+ "raw_name": "Tedersoo, Leho",
+ "given_name": "Leho",
+ "surname": "Tedersoo",
+ "role": "author"
+ },
+ {
+ "index": 65,
+ "raw_name": "Telleria, M.T.",
+ "given_name": "M.T.",
+ "surname": "Telleria",
+ "role": "author"
+ },
+ {
+ "index": 66,
+ "raw_name": "Udayanga, Dhanushka",
+ "given_name": "Dhanushka",
+ "surname": "Udayanga",
+ "role": "author"
+ },
+ {
+ "index": 67,
+ "raw_name": "Unterseher, Martin",
+ "given_name": "Martin",
+ "surname": "Unterseher",
+ "role": "author"
+ },
+ {
+ "index": 68,
+ "raw_name": "Volobuev, Sergey",
+ "given_name": "Sergey",
+ "surname": "Volobuev",
+ "role": "author"
+ },
+ {
+ "index": 69,
+ "raw_name": "Weiss, Michael",
+ "given_name": "Michael",
+ "surname": "Weiss",
+ "role": "author"
+ },
+ {
+ "index": 70,
+ "raw_name": "Wurzbacher, Christian",
+ "given_name": "Christian",
+ "surname": "Wurzbacher",
+ "role": "author"
+ }
+ ],
+ "refs": [],
+ "abstracts": [
+ {
+ "content": "UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (&lt;0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.",
+ "mimetype": "text/plain"
+ }
+ ]
+} \ No newline at end of file