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authorBryan Newbold <bnewbold@robocracy.org>2019-06-05 15:56:52 -0700
committerBryan Newbold <bnewbold@robocracy.org>2019-06-05 15:56:52 -0700
commit388503d92ff8a1f26a0376cc42cefb077a1d6401 (patch)
treeb2329cb6951bfbc5f98a0663f2e4b7991a1949ca /python/fatcat_web
parent805a8b1001754fb8397e539dbc15a6cfd65661f2 (diff)
downloadfatcat-388503d92ff8a1f26a0376cc42cefb077a1d6401.tar.gz
fatcat-388503d92ff8a1f26a0376cc42cefb077a1d6401.zip
more lookup views
Diffstat (limited to 'python/fatcat_web')
-rw-r--r--python/fatcat_web/routes.py84
-rw-r--r--python/fatcat_web/templates/container_lookup.html63
-rw-r--r--python/fatcat_web/templates/creator_lookup.html54
-rw-r--r--python/fatcat_web/templates/entity_macros.html18
-rw-r--r--python/fatcat_web/templates/file_lookup.html55
-rw-r--r--python/fatcat_web/templates/home.html3
-rw-r--r--python/fatcat_web/templates/release_lookup.html39
7 files changed, 279 insertions, 37 deletions
diff --git a/python/fatcat_web/routes.py b/python/fatcat_web/routes.py
index 5fef1b96..7ddd8cca 100644
--- a/python/fatcat_web/routes.py
+++ b/python/fatcat_web/routes.py
@@ -39,13 +39,32 @@ def container_lookup():
for key in ('issnl', 'wikidata_qid'):
if request.args.get(key):
extid = key
- break
+ extid_value = request.args.get(extid)
+ if extid_value:
+ extid_value = extid_value.strip()
+ break
if extid is None:
- abort(400)
+ return render_template('container_lookup.html')
try:
resp = api.lookup_container(**{extid: request.args.get(extid)})
+ except ValueError:
+ return make_response(
+ render_template('container_lookup.html',
+ lookup_key=extid,
+ lookup_value=extid_value,
+ lookup_error=400),
+ 400)
except ApiException as ae:
- abort(ae.status)
+ if ae.status == 404 or ae.status == 400:
+ return make_response(
+ render_template('container_lookup.html',
+ lookup_key=extid,
+ lookup_value=extid_value,
+ lookup_error=ae.status),
+ ae.status)
+ else:
+ app.log.info(ae)
+ abort(ae.status)
return redirect('/container/{}'.format(resp.ident))
@app.route('/container/<ident>', methods=['GET'])
@@ -92,13 +111,32 @@ def creator_lookup():
for key in ('orcid', 'wikidata_qid'):
if request.args.get(key):
extid = key
- break
+ extid_value = request.args.get(extid)
+ if extid_value:
+ extid_value = extid_value.strip()
+ break
if extid is None:
- abort(400)
+ return render_template('creator_lookup.html')
try:
- resp = api.lookup_creator(**{extid: request.args.get(extid)})
+ resp = api.lookup_creator(**{extid: extid_value})
+ except ValueError:
+ return make_response(
+ render_template('creator_lookup.html',
+ lookup_key=extid,
+ lookup_value=extid_value,
+ lookup_error=400),
+ 400)
except ApiException as ae:
- abort(ae.status)
+ if ae.status == 404 or ae.status == 400:
+ return make_response(
+ render_template('creator_lookup.html',
+ lookup_key=extid,
+ lookup_value=extid_value,
+ lookup_error=ae.status),
+ ae.status)
+ else:
+ app.log.info(ae)
+ abort(ae.status)
return redirect('/creator/{}'.format(resp.ident))
@app.route('/creator/<ident>', methods=['GET'])
@@ -133,13 +171,32 @@ def file_lookup():
for key in ('md5', 'sha1', 'sha256'):
if request.args.get(key):
extid = key
- break
+ extid_value = request.args.get(extid)
+ if extid_value:
+ extid_value = extid_value.strip()
+ break
if extid is None:
- abort(400)
+ return render_template('file_lookup.html')
try:
resp = api.lookup_file(**{extid: request.args.get(extid)})
+ except ValueError:
+ return make_response(
+ render_template('file_lookup.html',
+ lookup_key=extid,
+ lookup_value=extid_value,
+ lookup_error=400),
+ 400)
except ApiException as ae:
- abort(ae.status)
+ if ae.status == 404 or ae.status == 400:
+ return make_response(
+ render_template('file_lookup.html',
+ lookup_key=extid,
+ lookup_value=extid_value,
+ lookup_error=ae.status),
+ ae.status)
+ else:
+ app.log.info(ae)
+ abort(ae.status)
return redirect('/file/{}'.format(resp.ident))
@app.route('/file/<ident>', methods=['GET'])
@@ -231,6 +288,13 @@ def release_lookup():
return render_template('release_lookup.html')
try:
resp = api.lookup_release(**{extid: extid_value})
+ except ValueError:
+ return make_response(
+ render_template('release_lookup.html',
+ lookup_key=extid,
+ lookup_value=extid_value,
+ lookup_error=400),
+ 400)
except ApiException as ae:
if ae.status == 404 or ae.status == 400:
return make_response(
diff --git a/python/fatcat_web/templates/container_lookup.html b/python/fatcat_web/templates/container_lookup.html
new file mode 100644
index 00000000..1848739a
--- /dev/null
+++ b/python/fatcat_web/templates/container_lookup.html
@@ -0,0 +1,63 @@
+{% extends "base.html" %}
+{% import "entity_macros.html" as entity_macros %}
+
+{% block body %}
+
+<h1>Lookup Container by Identifier</h1>
+
+{% if lookup_error == 400 %}
+<div class="ui error message">
+<div class="header">400: Syntax Error</div>
+<b>{{ lookup_key }}:{{ lookup_value }}</code></b> doesn't look right to us. See
+below for details.
+</div>
+{% elif lookup_error == 404 %}
+<div class="ui error message">
+<div class="header">404: Not Found</div>
+Couldn't find a container with that identifier (<b><code>{{ lookup_key }}:{{
+lookup_value }}</code></b>). If you think it should be in the catalog, you could
+search for an existing record missing that identifier, or create a new container
+entity.
+{% if lookup_key == "doi" %}
+<p>You can check if it is a registered ISSN-L by visiting:
+<b><a href="https://portal.issn.org/{{ lookup_value
+}}">https://portal.issn.org/{{ lookup_value }}</a></b>. If this is a valid
+electronic or print ISSN, but not the ISSN-L for the container, you need to use
+the indicated "linking" ISSN.
+{% elif lookup_key == "wikidata_qid" %}
+<p>You can check if it is a real Wikidata entity by visiting:
+<b><a href="https://www.wikidata.org/wiki/{{ lookup_value }}/">https://www.wikidata.org/wiki/{{ lookup_value }}/</a></b>
+{% endif %}
+</div>
+{% endif %}
+
+<div class="ui top attached segment">
+
+<h2>ISSN-L</h2>
+<p>The "linking" ISSN for a journal or other publication is one of the
+"print" or "electronic"
+<a href="https://en.wikipedia.org/wiki/International_Standard_Serial_Number#Linking_ISSN">International
+Standard Serial Numbers</a>, which has been selected to represent the resource
+in all media. It is usually the ISSN which was registered first, and defaults
+to the "print" ISSN number for a journal. Fatcat uses ISSN-L as the primary
+identifier for journals to reduce confusion and potential for duplication. The
+ISSN organization publicly publishes a mapping between linking and
+print/electronic ISSNs.
+{{ entity_macros.lookup_form("issnl", "1234-567X", lookup_key, lookup_value, lookup_error) }}
+<i>&nbsp; Must include the dash</i>
+
+</div>
+<div class="ui attached bottom segment">
+
+<h2>Wikidata QID</h2>
+<p><a href="https://en.wikipedia.org/wiki/Wikidata#Items">Wikidata</a> is the
+structured, machine-readable database that complements Wikipedia. Entities,
+which can include bibliographic entities like books and papers, are identified
+by a "QID". Fatcat also links container (journal) and creator (author) entities
+to Wikidata by QID. Anybody can edit Wikidata and create QIDs.
+{{ entity_macros.lookup_form("wikidata_qid", "Q94324", lookup_key, lookup_value, lookup_error) }}
+<i>&nbsp; Include the "Q" prefix.</i>
+
+</div>
+
+{% endblock %}
diff --git a/python/fatcat_web/templates/creator_lookup.html b/python/fatcat_web/templates/creator_lookup.html
new file mode 100644
index 00000000..741efbda
--- /dev/null
+++ b/python/fatcat_web/templates/creator_lookup.html
@@ -0,0 +1,54 @@
+{% extends "base.html" %}
+{% import "entity_macros.html" as entity_macros %}
+
+{% block body %}
+
+<h1>Lookup Creator by Identifier</h1>
+
+{% if lookup_error == 400 %}
+<div class="ui error message">
+<div class="header">400: Syntax Error</div>
+<b>{{ lookup_key }}:{{ lookup_value }}</code></b> doesn't look right to us. See
+below for details.
+</div>
+{% elif lookup_error == 404 %}
+<div class="ui error message">
+<div class="header">404: Not Found</div>
+Couldn't find a creator with that identifier (<b><code>{{ lookup_key }}:{{
+lookup_value }}</code></b>). If you think it should be in the catalog, you could
+search for an existing record missing that identifier, or create a new creator
+entity.
+{% if lookup_key == "orcid" %}
+<p>You can check if it is a registered ORCiD:
+<b><a href="https://orcid.org/{{ lookup_value }}">https://orcid.org/{{ lookup_value }}</a></b>
+{% elif lookup_key == "wikidata_qid" %}
+<p>You can check if it is a real Wikidata entity by visiting:
+<b><a href="https://www.wikidata.org/wiki/{{ lookup_value }}/">https://www.wikidata.org/wiki/{{ lookup_value }}/</a></b>
+{% endif %}
+</div>
+{% endif %}
+
+<div class="ui top attached segment">
+
+<h2>ORCID</h2>
+<p><a href="https://en.wikipedia.org/wiki/ORCID">Open Researcher and
+Contributor ID</a> is used to unambiguously refer to a research author. They
+are free to register.
+{{ entity_macros.lookup_form("creator", "orcid", "0000-0002-1825-0097", lookup_key, lookup_value, lookup_error) }}
+<i>&nbsp; Must include the dashes</i>
+
+</div>
+<div class="ui attached bottom segment">
+
+<h2>Wikidata QID</h2>
+<p><a href="https://en.wikipedia.org/wiki/Wikidata#Items">Wikidata</a> is the
+structured, machine-readable database that complements Wikipedia. Entities,
+which can include bibliographic entities like books and papers, are identified
+by a "QID". Fatcat also links releases (papers, books) and container (journal)
+entities to Wikidata by QID. Anybody can edit Wikidata and create QIDs.
+{{ entity_macros.lookup_form("creator", "wikidata_qid", "Q94324", lookup_key, lookup_value, lookup_error) }}
+<i>&nbsp; Include the "Q" prefix.</i>
+
+</div>
+
+{% endblock %}
diff --git a/python/fatcat_web/templates/entity_macros.html b/python/fatcat_web/templates/entity_macros.html
index c47782a8..a2b2f996 100644
--- a/python/fatcat_web/templates/entity_macros.html
+++ b/python/fatcat_web/templates/entity_macros.html
@@ -96,3 +96,21 @@
</tbody>
</table>
{%- endmacro %}
+
+{% macro lookup_form(entity_type, key, example, lookup_key, lookup_value, lookup_error) -%}
+<form class="ui form" role="search" action="/{{ entity_type }}/lookup" method="get">
+ <div class="ui form">
+ <div class="field {% if key == lookup_key %}{% if lookup_error == 400 %}error{% elif lookup_error == 404 %}warning{% endif %}{% endif %}">
+ {% if key == lookup_key and lookup_error == 400 %}
+ <div class="ui pointing below red label">
+ Not correct syntax. Expected, eg, {{ example }}
+ </div>
+ {% endif %}
+ <div class="ui action input big fluid">
+ <input type="text" placeholder="{% if example %}eg, {{ example }}{% endif %}" name="{{ key }}" value="{% if key == lookup_key %}{{ lookup_value }}{% endif %}" aria-label="{{ key }} lookup">
+ <button class="ui button">Go!</button>
+ </div>
+ </div>
+ </div>
+</form>
+{%- endmacro %}
diff --git a/python/fatcat_web/templates/file_lookup.html b/python/fatcat_web/templates/file_lookup.html
new file mode 100644
index 00000000..c4255f47
--- /dev/null
+++ b/python/fatcat_web/templates/file_lookup.html
@@ -0,0 +1,55 @@
+{% extends "base.html" %}
+{% import "entity_macros.html" as entity_macros %}
+
+{% block body %}
+
+<h1>Lookup File by Hash</h1>
+
+{% if lookup_error == 400 %}
+<div class="ui error message">
+<div class="header">400: Syntax Error</div>
+<b>{{ lookup_key }}:{{ lookup_value }}</code></b> doesn't look right to us. See
+below for details.
+</div>
+{% elif lookup_error == 404 %}
+<div class="ui error message">
+<div class="header">404: Not Found</div>
+Couldn't find a file with that hash (<b><code>{{ lookup_key }}:{{
+lookup_value }}</code></b>). If you think it should be in the catalog, you could
+search for an existing record missing that hash, or create a new file
+entity.
+</div>
+{% endif %}
+
+<div class="ui top attached segment">
+
+<h2>SHA-1, SHA-256, MD5</h2>
+<p><a href="https://en.wikipedia.org/wiki/SHA-1">SHA-1</a> and
+<a href="https://en.wikipedia.org/wiki/SHA-2">SHA-256</a> are popular
+cryptographic message digests. They can be used to detect accidental
+corruption, intentional modification, and can be used as unique identifiers for
+a file. The chance of there existing multiple files with the same hash is
+effectively zero due to random chance; the chance of somebody having
+intentionally created files with the same hash depends on the strength of the
+hash function.
+
+<p><b>SHA-256</b> is considered "strong" today and used in new software.
+{{ entity_macros.lookup_form("file", "sha256", "cd65a99c0d95f3208f4ea28bc73f641a6901a22dfb882d14d5c208821b56c09c", lookup_key, lookup_value, lookup_error) }}
+<i>&nbsp; Lower-case hexideximal, 64 characters</i>
+<br><br>
+
+<p><b>SHA-1</b> has shown weaknesses, but is used widely in data archiving software.
+{{ entity_macros.lookup_form("file", "sha1", "79ed4e54acdd521ca5f7b52a2964c9c116c3e3bf", lookup_key, lookup_value, lookup_error) }}
+<i>&nbsp; Lower-case hexideximal, 40 characters</i>
+<br><br>
+
+<p><b><a href="https://en.wikipedia.org/wiki/MD5">MD5</a></b> is an older but still
+commonly used checksum. It was originally designed in 1992 to be
+cryptographically secure, but is no longer considered secure in that context.
+It is still perfectly adequate for detecting accidental file corruption.
+{{ entity_macros.lookup_form("file", "md5", "eebc51dd5684ec7fd07f7ac0c30e7a78", lookup_key, lookup_value, lookup_error) }}
+<i>&nbsp; Lower-case hexideximal, 32 characters</i>
+
+</div>
+
+{% endblock %}
diff --git a/python/fatcat_web/templates/home.html b/python/fatcat_web/templates/home.html
index 23563f07..87968f30 100644
--- a/python/fatcat_web/templates/home.html
+++ b/python/fatcat_web/templates/home.html
@@ -84,6 +84,7 @@ indexing (aka, linking together of pre-prints and final copies).
<i class="search icon"></i>
<input type="text" placeholder="ISSN-L" name="issnl" aria-label="lookup journal by ISSN-L">
</div>
+ <br><a href="/container/lookup">Other Identifiers</a>
</form>
<tr><td><b>Creator</b>
@@ -102,6 +103,7 @@ indexing (aka, linking together of pre-prints and final copies).
<i class="search icon"></i>
<input type="text" placeholder="ORCID" name="orcid" aria-label="lookup author by ORCID">
</div>
+ <br><a href="/creator/lookup">Other Identifiers</a>
</form>
<tr><td><b>File</b>
<br>specific digital blobs (immutable)
@@ -118,6 +120,7 @@ indexing (aka, linking together of pre-prints and final copies).
<i class="search icon"></i>
<input type="text" placeholder="SHA-1" name="sha1" aria-label="lookup file by SHA1">
</div>
+ <br><a href="/file/lookup">Other Hashes</a>
</form>
<tr><td><b>File Set</b>
<br>datasets, suplementary materials
diff --git a/python/fatcat_web/templates/release_lookup.html b/python/fatcat_web/templates/release_lookup.html
index 0495da36..924d70db 100644
--- a/python/fatcat_web/templates/release_lookup.html
+++ b/python/fatcat_web/templates/release_lookup.html
@@ -1,22 +1,5 @@
{% extends "base.html" %}
-
-{% macro lookup_form(key, example, lookup_key, lookup_value, lookup_error) -%}
-<form class="ui form" role="search" action="/release/lookup" method="get">
- <div class="ui form">
- <div class="field {% if key == lookup_key %}{% if lookup_error == 400 %}error{% elif lookup_error == 404 %}warning{% endif %}{% endif %}">
- {% if key == lookup_key and lookup_error == 400 %}
- <div class="ui pointing below red label">
- Not correct syntax. Expected, eg, {{ example }}
- </div>
- {% endif %}
- <div class="ui action input big fluid">
- <input type="text" placeholder="{% if example %}eg, {{ example }}{% endif %}" name="{{ key }}" value="{% if key == lookup_key %}{{ lookup_value }}{% endif %}" aria-label="{{ key }} lookup">
- <button class="ui button">Go!</button>
- </div>
- </div>
- </div>
-</form>
-{%- endmacro %}
+{% import "entity_macros.html" as entity_macros %}
{% block body %}
@@ -41,7 +24,9 @@ entity.
{% elif lookup_key == "pmcid" %}
<p>You can check if it is a real PMCID by visiting:
<b><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/{{ lookup_value }}/">https://www.ncbi.nlm.nih.gov/pmc/articles/{{ lookup_value }}/</a></b>
-{% else %}
+{% elif lookup_key == "wikidata_qid" %}
+<p>You can check if it is a real Wikidata entity by visiting:
+<b><a href="https://www.wikidata.org/wiki/{{ lookup_value }}/">https://www.wikidata.org/wiki/{{ lookup_value }}/</a></b>
{% endif %}
</div>
{% endif %}
@@ -56,7 +41,7 @@ digital objects. Fatcat doesn't include all DOIs (eg, for granular components
or TV shows), but it should for all complete research publications. DOIs are
generated by publishers, who pay a fee to registrars like Crossref, Datacite,
or JALC.
-{{ lookup_form("doi", "10.1234/abc.5489", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "doi", "10.1234/abc.5489", lookup_key, lookup_value, lookup_error) }}
<i>&nbsp; Don't include a URL like "http://dx.doi.org/"</i>
</div>
@@ -68,7 +53,7 @@ catalog of biomedical publications. Catalog updates are published frequently,
and may include deletions. Fatcat currently is only updated with new entries,
it does not delete PMIDs. PubMed is edited by a large staff of trained
catalogers, and has strict inclusion criteria for journals.
-{{ lookup_form("pmid", "823835", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "pmid", "823835", lookup_key, lookup_value, lookup_error) }}
<br>
<p><a href="https://en.wikipedia.org/wiki/PubMed_Central#PMCID">PubMed Central
@@ -76,7 +61,7 @@ Identifiers (PMCID)</a> reference works deposited in the US (or European) PMC
repositories. Not all works with a PMCID have a PMID. PMCIDs can be versioned
(eg, with a trailing ".2"), but these are rare and most Fatcat releases only
have the non-versioned PMCID.
-{{ lookup_form("pmcid", "PMC93932", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "pmcid", "PMC93932", lookup_key, lookup_value, lookup_error) }}
<i>&nbsp; Include the "PMC" prefix.</i>
</div>
@@ -88,7 +73,7 @@ structured, machine-readable database that complements Wikipedia. Entities,
which can include bibliographic entities like books and papers, are identified
by a "QID". Fatcat also links container (journal) and creator (author) entities
to Wikidata by QID. Anybody can edit Wikidata and create QIDs.
-{{ lookup_form("wikidata_qid", "Q94324", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "wikidata_qid", "Q94324", lookup_key, lookup_value, lookup_error) }}
<i>&nbsp; Include the "Q" prefix.</i>
</div>
@@ -98,7 +83,7 @@ to Wikidata by QID. Anybody can edit Wikidata and create QIDs.
<p><a href="https://en.wikipedia.org/wiki/Archival_Resource_Key">Archival
Resource Keys</a> are no-cost, distributed identifiers based on URLs. Mostly
used by archival systems (as opposed to publishers or repositories).
-{{ lookup_form("ark", "ark:2349/sddd92", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "ark", "ark:2349/sddd92", lookup_key, lookup_value, lookup_error) }}
<i>&nbsp; Only the identifier part (starting with "ark:"), not the full URL.</i>
</div>
@@ -108,7 +93,7 @@ used by archival systems (as opposed to publishers or repositories).
<p><a href="https://en.wikipedia.org/wiki/International_Standard_Book_Number">
International Standard Book Number</a>, assigned to specific published versions
of a book (including ebooks).
-{{ lookup_form("isbn13", "978-3-16-148410-0", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "isbn13", "978-3-16-148410-0", lookup_key, lookup_value, lookup_error) }}
<i>&nbsp; Canonical ISBN-13 number (not ISBN-9), with hyphens</i>
</div>
@@ -120,7 +105,7 @@ generated for works deposited in the free arxiv.org pre-print repository.
Identifiers are generated for each version of a work, eg ending in "v3". Fatcat
releases must be versioned; if you don't know the version you can always lookup
"v1" and then look for other releases under the same work.
-{{ lookup_form("arxiv", "0706.0001v1 or math-GT/0309136v2", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "arxiv", "0706.0001v1 or math-GT/0309136v2", lookup_key, lookup_value, lookup_error) }}
<i>&nbsp; Old and new style supported, but version always required for exact lookups.</i>
</div>
@@ -133,7 +118,7 @@ are numbers internally assigned to works archived on
number after a <code>10.2307/</code> prefix, but not all works have such a DOI.
Fatcat mostly has JSTOR identifiers for works in the "Early Journal
Collection", which are in the public domain.
-{{ lookup_form("jstor", "92492", lookup_key, lookup_value, lookup_error) }}
+{{ entity_macros.lookup_form("release", "jstor", "92492", lookup_key, lookup_value, lookup_error) }}
</div>