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authorBryan Newbold <bnewbold@robocracy.org>2021-08-06 11:58:16 -0700
committerBryan Newbold <bnewbold@robocracy.org>2021-08-06 11:58:16 -0700
commit99885b458ad505ebb63b3e7cf5b1bae3dd2a459e (patch)
treede3fbb3e42b0bb7f6e447d2e13ac3f92a8bb90b2 /python/fatcat_web
parent950d3f08bd439aed92d01dbc3cca9747570aa82c (diff)
parent56e4ce2d8347cdfedd492d54fde080772f3d8725 (diff)
downloadfatcat-99885b458ad505ebb63b3e7cf5b1bae3dd2a459e.tar.gz
fatcat-99885b458ad505ebb63b3e7cf5b1bae3dd2a459e.zip
Merge branch 'bnewbold-refs-apis'
Diffstat (limited to 'python/fatcat_web')
-rw-r--r--python/fatcat_web/__init__.py2
-rw-r--r--python/fatcat_web/forms.py41
-rw-r--r--python/fatcat_web/ref_routes.py168
-rw-r--r--python/fatcat_web/routes.py2
-rw-r--r--python/fatcat_web/templates/entity_base.html5
-rw-r--r--python/fatcat_web/templates/entity_macros.html109
-rw-r--r--python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html25
-rw-r--r--python/fatcat_web/templates/reference_match.html93
-rw-r--r--python/fatcat_web/templates/refs_macros.html132
-rw-r--r--python/fatcat_web/templates/release_view.html27
-rw-r--r--python/fatcat_web/templates/release_view_fuzzy_refs.html27
-rw-r--r--python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html23
12 files changed, 639 insertions, 15 deletions
diff --git a/python/fatcat_web/__init__.py b/python/fatcat_web/__init__.py
index 07b4e083..3207bc75 100644
--- a/python/fatcat_web/__init__.py
+++ b/python/fatcat_web/__init__.py
@@ -76,7 +76,7 @@ app.register_blueprint(mwoauth.bp, url_prefix='/auth/wikipedia')
app.es_client = elasticsearch.Elasticsearch(Config.ELASTICSEARCH_BACKEND)
-from fatcat_web import routes, editing_routes, auth, cors, forms
+from fatcat_web import routes, editing_routes, ref_routes, auth, cors, forms
# TODO: blocking on ORCID support in loginpass
if Config.ORCID_CLIENT_ID:
diff --git a/python/fatcat_web/forms.py b/python/fatcat_web/forms.py
index 1c9fb199..19176a59 100644
--- a/python/fatcat_web/forms.py
+++ b/python/fatcat_web/forms.py
@@ -482,3 +482,44 @@ class EntityTomlForm(EntityEditForm):
etf.toml.data = entity_to_toml(entity, pop_fields=pop_fields)
return etf
+
+class ReferenceMatchForm(FlaskForm):
+
+ submit_type = SelectField('submit_type',
+ [validators.DataRequired()],
+ choices=['parse', 'match'])
+
+ raw_citation = TextAreaField("Citation String", render_kw={'rows':'3'})
+
+ title = StringField("Title")
+ journal = StringField("Journal or Conference")
+ first_author = StringField("First Author")
+ #year = IntegerField('Year Released',
+ # [validators.Optional(True), valid_year])
+ year = StringField("Year Released")
+ volume = StringField("Volume")
+ issue = StringField("Issue")
+ pages = StringField("Pages")
+
+ @staticmethod
+ def from_grobid_parse(parse_dict, raw_citation):
+ """
+ Initializes form from GROBID extraction
+ """
+ rmf = ReferenceMatchForm()
+ rmf.raw_citation.data = raw_citation
+
+ direct_fields = ['title', 'journal', 'volume', 'issue', 'pages']
+ for k in direct_fields:
+ if parse_dict.get(k):
+ a = getattr(rmf, k)
+ a.data = parse_dict[k]
+
+ date = parse_dict.get('date')
+ if date and len(date) >= 4 and date[0:4].isdigit():
+ rmf.year.data = int(date[0:4])
+
+ if parse_dict.get('authors'):
+ rmf.first_author.data = parse_dict['authors'][0].get('name')
+
+ return rmf
diff --git a/python/fatcat_web/ref_routes.py b/python/fatcat_web/ref_routes.py
new file mode 100644
index 00000000..d4219012
--- /dev/null
+++ b/python/fatcat_web/ref_routes.py
@@ -0,0 +1,168 @@
+"""
+Flask endpoints for reference (citation) endpoints. Eg, listing references
+"inbound" and "outbound" from a specific release or work.
+"""
+
+from flask import render_template, request, Response
+from fatcat_openapi_client import *
+from fuzzycat.grobid_unstructured import grobid_api_process_citation, transform_grobid_ref_xml, grobid_ref_to_release
+from fuzzycat.simple import close_fuzzy_biblio_matches, close_fuzzy_release_matches
+
+from fatcat_tools.references import enrich_inbound_refs, enrich_outbound_refs, get_inbound_refs, get_outbound_refs, RefHits
+from fatcat_tools.transforms.access import release_access_options
+from fatcat_web import app, api
+from fatcat_web.cors import crossdomain
+from fatcat_web.forms import *
+from fatcat_web.entity_helpers import *
+
+def _refs_web(direction, release_ident=None, work_ident=None, openlibrary_id=None, wikipedia_article=None) -> RefHits:
+ offset = request.args.get('offset', '0')
+ offset = max(0, int(offset)) if offset.isnumeric() else 0
+ limit = request.args.get('limit', '30')
+ limit = min(max(0, int(limit)), 100) if limit.isnumeric() else 30
+ if direction == "in":
+ hits = get_inbound_refs(
+ release_ident=release_ident,
+ work_ident=work_ident,
+ openlibrary_work=openlibrary_id,
+ es_client=app.es_client,
+ offset=offset,
+ limit=limit,
+ )
+ hits.result_refs = enrich_inbound_refs(
+ hits.result_refs,
+ fatcat_api_client=api,
+ expand="container,files,webcaptures",
+ )
+ elif direction == "out":
+ hits = get_outbound_refs(
+ release_ident=release_ident,
+ wikipedia_article=wikipedia_article,
+ work_ident=work_ident,
+ es_client=app.es_client,
+ offset=offset,
+ limit=limit,
+ )
+ hits.result_refs = enrich_outbound_refs(
+ hits.result_refs,
+ fatcat_api_client=api,
+ expand="container,files,webcaptures",
+ )
+ else:
+ raise ValueError()
+ return hits
+
+
+@app.route('/release/<string(length=26):ident>/refs-in', methods=['GET'])
+def release_view_refs_inbound(ident):
+ if request.accept_mimetypes.best == "application/json":
+ return release_view_refs_inbound_json(ident)
+
+ release = generic_get_entity("release", ident)
+ hits = _refs_web("in", release_ident=ident)
+ return render_template('release_view_fuzzy_refs.html', direction="in", entity=release, hits=hits), 200
+
+
+@app.route('/release/<string(length=26):ident>/refs-out', methods=['GET'])
+def release_view_refs_outbound(ident):
+ if request.accept_mimetypes.best == "application/json":
+ return release_view_refs_outbound_json(ident)
+
+ release = generic_get_entity("release", ident)
+ hits = _refs_web("out", release_ident=ident)
+ return render_template('release_view_fuzzy_refs.html', direction="out", entity=release, hits=hits), 200
+
+@app.route('/openlibrary/OL<int:id_num>W/refs-in', methods=['GET'])
+def openlibrary_view_refs_inbound(id_num):
+ if request.accept_mimetypes.best == "application/json":
+ return openlibrary_view_refs_inbound_json(id_num)
+
+ openlibrary_id = f"OL{id_num}W"
+ hits = _refs_web("in", openlibrary_id=openlibrary_id)
+ return render_template('openlibrary_view_fuzzy_refs.html', openlibrary_id=openlibrary_id, direction="in", hits=hits), 200
+
+@app.route('/wikipedia/<string(length=2):wiki_lang>:<string:wiki_article>/refs-out', methods=['GET'])
+def wikipedia_view_refs_outbound(wiki_lang: str, wiki_article: str):
+ if request.accept_mimetypes.best == "application/json":
+ return wikipedia_view_refs_outbound_json(wiki_lang, wiki_article)
+
+ wiki_url = f"https://{wiki_lang}.wikipedia.org/wiki/{wiki_article}"
+ wiki_article = wiki_article.replace('_', ' ')
+ wikipedia_article = wiki_lang + ":" + wiki_article
+ hits = _refs_web("out", wikipedia_article=wikipedia_article)
+ return render_template('wikipedia_view_fuzzy_refs.html', wiki_article=wiki_article, wiki_lang=wiki_lang, wiki_url=wiki_url, direction="out", hits=hits), 200
+
+
+@app.route('/reference/match', methods=['GET', 'POST'])
+def reference_match():
+
+ form = ReferenceMatchForm()
+ grobid_status = None
+ grobid_dict = None
+
+ if form.is_submitted():
+ if form.validate_on_submit():
+ if form.submit_type.data == 'parse':
+ resp_xml = grobid_api_process_citation(form.raw_citation.data)
+ if not resp_xml:
+ grobid_status = "failed"
+ return render_template('reference_match.html', form=form, grobid_status=grobid_status), 400
+ grobid_dict = transform_grobid_ref_xml(resp_xml)
+ if not grobid_dict:
+ grobid_status = "empty"
+ return render_template('reference_match.html', form=form, grobid_status=grobid_status), 200
+ #print(grobid_dict)
+ release_stub = grobid_ref_to_release(grobid_dict)
+ # remove empty values from GROBID parsed dict
+ grobid_dict = {k: v for k, v in grobid_dict.items() if v is not None}
+ form = ReferenceMatchForm.from_grobid_parse(grobid_dict, form.raw_citation.data)
+ grobid_status = "success"
+ matches = close_fuzzy_release_matches(es_client=app.es_client, release=release_stub, match_limit=10) or []
+ elif form.submit_type.data == 'match':
+ matches = close_fuzzy_biblio_matches(es_client=app.es_client, biblio=form.data, match_limit=10) or []
+ else:
+ raise NotImplementedError()
+
+ for m in matches:
+ # expand releases more completely
+ m.release = api.get_release(m.release.ident, expand="container,files,filesets,webcaptures", hide="abstract,refs")
+ # hack in access options
+ m.access_options = release_access_options(m.release)
+
+ return render_template('reference_match.html', form=form, grobid_dict=grobid_dict, grobid_status=grobid_status, matches=matches), 200
+
+ elif form.errors:
+ return render_template('reference_match.html', form=form), 400
+
+ return render_template('reference_match.html', form=form), 200
+
+
+### Pseudo-APIs #############################################################
+
+@app.route('/release/<string(length=26):ident>/refs-out.json', methods=['GET', 'OPTIONS'])
+@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
+def release_view_refs_outbound_json(ident):
+ hits = _refs_web("out", release_ident=ident)
+ return Response(hits.json(exclude_unset=True), mimetype="application/json")
+
+
+@app.route('/release/<string(length=26):ident>/refs-in.json', methods=['GET', 'OPTIONS'])
+@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
+def release_view_refs_inbound_json(ident):
+ hits = _refs_web("in", release_ident=ident)
+ return Response(hits.json(exclude_unset=True), mimetype="application/json")
+
+@app.route('/openlibrary/OL<int:id_num>W/refs-in.json', methods=['GET', 'OPTIONS'])
+@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
+def openlibrary_view_refs_inbound_json(id_num):
+ openlibrary_id = f"OL{id_num}W"
+ hits = _refs_web("in", openlibrary_id=openlibrary_id)
+ return Response(hits.json(exclude_unset=True), mimetype="application/json")
+
+@app.route('/wikipedia/<string(length=2):wiki_lang>:<string:wiki_article>/refs-out.json', methods=['GET', 'OPTIONS'])
+@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
+def wikipedia_view_refs_outbound_json(wiki_lang: str, wiki_article: str):
+ wiki_article = wiki_article.replace('_', ' ')
+ wikipedia_article = wiki_lang + ":" + wiki_article
+ hits = _refs_web("out", wikipedia_article=wikipedia_article)
+ return Response(hits.json(exclude_unset=True), mimetype="application/json")
diff --git a/python/fatcat_web/routes.py b/python/fatcat_web/routes.py
index 144922a8..ab060c45 100644
--- a/python/fatcat_web/routes.py
+++ b/python/fatcat_web/routes.py
@@ -1128,12 +1128,14 @@ def page_edit_conflict(e):
@app.errorhandler(500)
def page_server_error(e):
+ app.log.error(e)
return render_template('500.html'), 500
@app.errorhandler(502)
@app.errorhandler(503)
@app.errorhandler(504)
def page_server_down(e):
+ app.log.error(e)
return render_template('503.html'), 503
@app.errorhandler(ApiException)
diff --git a/python/fatcat_web/templates/entity_base.html b/python/fatcat_web/templates/entity_base.html
index 36280f5d..52acd70a 100644
--- a/python/fatcat_web/templates/entity_base.html
+++ b/python/fatcat_web/templates/entity_base.html
@@ -85,7 +85,10 @@
{{ entity_tab("coverage", "Coverage", "/coverage") }}
{% elif entity_type == "release" and entity.state != 'deleted' %}
{{ entity_tab("contribs", "Authors", "/contribs", entity._authors|count ) }}
- {{ entity_tab("references", "References", "/references", entity.refs|count) }}
+ {% if entity.state == 'active' %}
+ {{ entity_tab("refs-out", "References", "/refs-out") }}
+ {{ entity_tab("refs-in", "Cited By", "/refs-in") }}
+ {% endif %}
{% endif %}
{{ entity_tab("metadata", "Metadata", "/metadata") }}
</div>
diff --git a/python/fatcat_web/templates/entity_macros.html b/python/fatcat_web/templates/entity_macros.html
index 50f45753..6b565f69 100644
--- a/python/fatcat_web/templates/entity_macros.html
+++ b/python/fatcat_web/templates/entity_macros.html
@@ -387,3 +387,112 @@ yellow
</table>
{%- endmacro %}
+
+{# this is useful for things like showing lists of releases in tables #}
+{% macro release_summary(release) %}
+ <b><a href="/release/{{ release.ident }}">{{ release.title }}</a></b>
+ {% if release.release_type not in ["article-journal", "paper-conference"] %}
+ <b>[{{ release.release_type or "unknown-type" }}]</b>
+ {% endif %}
+ {% if release.contribs %}<br>{% endif %}
+ {% for contrib in release.contribs[:8] %}
+ {% if contrib.creator %}
+ <a href="/contib/{{ contrib.creator.ident }}" style="color: black;">{{ contrib.creator.display_name }}</a>
+ {% else %}
+ {{ contrib.raw_name }}
+ {%- endif %}
+ {%- if not loop.last %}, {% endif %}
+ {% endfor %}
+ {% if release.contribs | length > 8 %} <i>(+ more)</i> {%endif %}
+ {% if release.release_year or release.container or (release.extra and release.extra.container_name) %}<br>{% endif %}
+ {% if release.release_year %}
+ {% if release.release_date %}
+ <span title="{{ release.release_date }}">{{ release.release_year }}</span>
+ {% else %}
+ {{ release.release_year }}
+ {% endif %}
+ &nbsp;
+ {% endif %}
+ {% if release.container %}
+ <a href="/container/{{ release.container.ident }}" style="color: black;"><i>{{ release.container.name }}</i></a>
+ {% elif release.extra and release.extra.container_name %}
+ <i>{{ release.extra.container_name }}</i>
+ {% endif %}
+
+ {% if release.release_stage == "submitted" %}
+ &nbsp;<b style="color: brown; text-transform: uppercase;">pre-print</b>
+ {% elif release.release_stage and release.release_stage != "published" %}
+ &nbsp;<b style="color: brown; text-transform: uppercase;">{{ release.release_stage }} version</b>
+ {% elif not release.release_stage %}
+ &nbsp;<b style="color: brown; text-transform: uppercase;">unpublished</b>
+ {% endif %}
+<br>
+ {% if release.version %}
+ <span style="color:green">version:{{ release.version }}</span>&nbsp;
+ {% endif %}
+ {% if release.number %}
+ <span style="color:green">number:{{ release.number }}</span>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.doi %}
+ <a href="https://doi.org/{{ release.ext_ids.doi }}" style="color:green;">doi:{{ release.ext_ids.doi }}</a>&nbsp;
+ {% endif %}
+ {# TODO: links #}
+ {% if release.ext_ids.arxiv %}
+ <a href="#" style="color:green;">arXiv:{{ release.ext_ids.arxiv }}</a>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.pmcid %}
+ <a href="#" style="color:green;">pmcid:{{ release.ext_ids.pmcid }}</a>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.pmid %}
+ <a href="#" style="color:green;">pmid:{{ release.ext_ids.pmid }}</a>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.dblp %}
+ <a href="#" style="color:green;">dblp:{{ release.ext_ids.dblp }}</a>&nbsp;
+ {% endif %}
+{% endmacro %}
+
+{# similar to the release_summary above, but for CSL-JSON #}
+{% macro csl_summary(csl) %}
+ <b>{{ csl.title }}</b>
+ {% if csl.title and csl.author %}<br>{% endif %}
+ {% if csl.author %}
+ {% for author in csl.author[:8] %}
+ {% if author.literal %}
+ {{ author.literal }}
+ {% elif author.raw_name %}
+ {{ author.raw_name }}
+ {% elif author.family and author.given %}
+ {{ author.given }} {{ author.family }}
+ {% elif author.family %}
+ {{ author.family }}
+ {% elif author.name %}
+ {# DEPRECATED: was used by refs code path for a while. Delete in, eg, year 2022 #}
+ {{ author.name }}
+ {% endif %}
+ {%- if not loop.last %}, {% endif %}
+ {% endfor %}
+ {% if csl.author | length > 8 %} <i>(+ more)</i> {%endif %}
+ {% endif %}
+
+ {% if csl.issued or csl["container-title"] %}<br>{% endif %}
+ {% if csl.issued and csl.issued is mapping %}
+ {% if csl.issued['date-parts'] %}
+ {{ csl.issued['date-parts'][0][0] }} &nbsp;
+ {% elif csl.issued.raw %}
+ {{ csl.issued.raw }} &nbsp;
+ {% endif %}
+ {% endif %}
+ {% if csl["container-title"] %}
+ <i>{{ csl["container-title"] }}</i>
+ {% endif %}
+ <br>
+ {% if csl.volume %}
+ <span style="color:green">volume:{{ csl.volume}}</span>&nbsp;
+ {% endif %}
+ {% if csl.DOI %}
+ <a href="https://doi.org/{{ csl.DOI }}" style="color:green;">doi:{{ csl.DOI }}</a>&nbsp;
+ {% endif %}
+ {% if csl.URL %}
+ <a href="{{ csl.URL }}" style="color:green;">url:{{ csl.URL }}</a>&nbsp;
+ {% endif %}
+{% endmacro %}
diff --git a/python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html b/python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html
new file mode 100644
index 00000000..21bf76f2
--- /dev/null
+++ b/python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html
@@ -0,0 +1,25 @@
+{% extends "base.html" %}
+{% import "refs_macros.html" as refs_macros %}
+
+{% block title %}Open Library Refs{% endblock %}
+
+{% block fullbody %}
+<h1 class="ui header">
+ {% if hits.result_refs and hits.result_refs[0].ref.target_unstructured %}
+ <i>{{ hits.result_refs[0].ref.target_unstructured }}</i>
+ {% endif %}
+ <span class="sub header"><a href="https://openlibrary.org/works/{{ openlibrary_id }}"><code>https://openlibrary.org/works/{{ openlibrary_id }}</code></a></span>
+</h1>
+
+{% if direction == "in" %}
+ <h3>Cited By</h3>
+ <p>This page lists references to this book from other works (eg, journal articles).
+{% elif direction == "out" %}
+ <h3>References</h3>
+ <i>Refernces from this book to other entities.</i>
+{% endif %}
+
+{{ refs_macros.refs_table(hits, direction) }}
+
+{% endblock %}
+
diff --git a/python/fatcat_web/templates/reference_match.html b/python/fatcat_web/templates/reference_match.html
new file mode 100644
index 00000000..f2335f52
--- /dev/null
+++ b/python/fatcat_web/templates/reference_match.html
@@ -0,0 +1,93 @@
+{% extends "base.html" %}
+{% import "entity_macros.html" as entity_macros %}
+{% import "edit_macros.html" as edit_macros %}
+
+{% block body %}
+
+<h1>Reference Fuzzy Match Tool</h1>
+
+<form class="ui form" id="reference_match" method="POST" action="/reference/match">
+ <input type="hidden" name="csrf_token" value="{{ csrf_token() }}"/>
+
+ <div class="ui segment">
+ <h3>Parse Citation</h3>
+
+ <p>Enter a citation string here and we will try to parse it (using GROBID)
+ into a structured format, then match against the catalog.
+
+ {{ edit_macros.form_field_basic(form.raw_citation) }}
+
+ <button class="ui primary submit button right floated" type="submit" name="submit_type" value="parse">
+ Parse
+ </button>
+ <br clear="all">
+ </div>
+
+ {% if grobid_status == "success" and grobid_dict %}
+ <div class="ui positive message">
+ <div class="header">Parsed Citation String</div>
+ {{ entity_macros.extra_metadata(grobid_dict) }}
+ <p><i>See below for fuzzy match results</i>
+ </div>
+ {% endif %}
+
+ <div class="ui segment">
+ <h3>Fuzzy Match Metadata</h3>
+
+ <p>Enter whatever bibliographic metadata fields you know, and we will try to
+ match to catalog entries.
+
+ <p><b>NOTE:</b> if you already know a persistent identifier (like a DOI), you
+ should use the <a href="/release/lookup">lookup tool</a> instead.
+
+ <br>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.title) }}
+ </div>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.first_author) }}
+ </div>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.journal) }}
+ </div>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.year) }}
+ {{ edit_macros.form_field_basic(form.volume) }}
+ {{ edit_macros.form_field_basic(form.issue) }}
+ {{ edit_macros.form_field_basic(form.pages) }}
+ </div>
+
+ <button class="ui primary submit button right floated" type="submit" name="submit_type" value="match">
+ Match
+ </button>
+ <br clear="all">
+ </div>
+
+</form>
+
+{% if matches is defined %}
+ <h3>Matched Releases</h3>
+
+ {% if not matches %}
+ <p><i>No matches found</i>
+ {% endif %}
+
+ <table class="ui very basic celled table">
+ <tbody>
+ {% for match in matches %}
+ <tr><td class="collapsing center aligned">
+ <br><b>{{ match.status.name }}</b>
+ <br>{{ match.reason.name }}
+ <td class="">
+ {{ entity_macros.release_summary(match.release) }}
+ <td class="">
+ {% if match.access_options %}
+ <a href="{{ match.access_options[0].access_url}}" class="ui tiny green active button">{{ match.access_options[0].access_type.name }}</a>
+ {% endif %}
+ {% endfor %}
+ </tbody>
+ </table>
+
+{% endif %}
+
+{% endblock %}
diff --git a/python/fatcat_web/templates/refs_macros.html b/python/fatcat_web/templates/refs_macros.html
new file mode 100644
index 00000000..47ea2dcf
--- /dev/null
+++ b/python/fatcat_web/templates/refs_macros.html
@@ -0,0 +1,132 @@
+{% import "entity_macros.html" as entity_macros %}
+
+{% macro pagination_row(hits, with_links=False) %}
+ {% if with_links and hits.offset %}
+ <a href="?offset={{ hits.offset - hits.limit }}">&laquo; prev</a> &nbsp;
+ {% endif %}
+ {% if hits.count_returned == 0 %}
+ Showing 0 references
+ {% else %}
+ Showing {{ "{:,}".format(hits.offset + 1) }} - {{ "{:,}".format(hits.offset + hits.count_returned) }} of {{ "{:,}".format(hits.count_total) }} references
+ {% endif %}
+ {% if with_links and hits.count_total != hits.count_returned and hits.offset + hits.limit < hits.count_total %}
+ &nbsp;<a href="?offset={{ hits.offset + hits.limit }}">next &raquo;</a>
+ {% endif %}
+{% endmacro %}
+
+{% macro refs_table(hits, direction) %}
+<div class="ui warning message">
+ <div class="header">
+ Fuzzy reference matching is a work in progress!
+ </div>
+ Read more about quality, completeness, and caveats <a href="https://guide.fatcat.wiki/reference_graph.html">in the fatcat guide</a>.
+</div>
+
+<table class="ui table">
+<thead>
+ <tr><th colspan="3">
+ {{ pagination_row(hits, with_links=False) }}
+ (in {{ hits.query_wall_time_ms }}ms)
+</thead>
+<tbody>
+{% if hits.count_total == 0 %}
+ <tr><td class="ui placeholder segment">
+ <div class="ui icon header">
+ <i class="unlink icon"></i>
+ No References Found
+ </div>
+{% endif %}
+{% for row in hits.result_refs %}
+ {% set release = row.release %}
+ <tr>
+ <td class="collapsing left aligned top aligned">
+ {# TODO: ref_locator? #}
+ {% if direction == "out" %}
+ {% if row.ref.ref_key %}
+ <code title="index={{ row.ref.ref_index }}">[{{ row.ref.ref_key }}]</code><br>
+ {% endif %}
+ {% endif %}
+
+ {% if row.ref.match_status == "exact" %}
+ {% set match_icon = "linkify" %}
+ {% elif row.ref.match_status == "unmatched" %}
+ {% set match_icon = "question circle outline" %}
+ {% else %}
+ {% set match_icon = "magic" %}
+ {% endif %}
+ <i class="{{ match_icon }} icon" title="{{ row.ref.match_status }} {{ row.ref.match_reason }}"></i><br>
+ {% if row.ref.match_provenance %}
+ via {{ row.ref.match_provenance }}<br>
+ {% endif %}
+
+ <td class="">
+ {% if release %}
+ {{ entity_macros.release_summary(release) }}
+ {% elif direction == "in" and row.ref.source_wikipedia_article %}
+ {% set wiki_lang = row.ref.source_wikipedia_article.split(':')[0] %}
+ {% set wiki_article = ':'.join(row.ref.source_wikipedia_article.split(':')[1:]) %}
+ <b>
+ <a href="https://{{ wiki_lang }}.wikipedia.org/wiki/{{ wiki_article.replace(' ', '_') }}">
+ {{ wiki_article }}
+ </a>
+ [wikipedia]
+ </b>
+ <br>
+ <span style="color:green;">lang:{{ wiki_lang }}</span>&nbsp;
+ <a href="/wikipedia/{{ wiki_lang }}:{{ wiki_article.replace(' ', '_') }}/refs-out" style="color:green;">[references]</a>&nbsp;
+ {% elif direction == "out" and row.ref.target_unstructured %}
+ <code>{{ row.ref.target_unstructured }}</code>
+ {% if row.ref.target_openlibrary_work %}
+ <br>
+ <a href="https://openlibrary.org/{{ row.ref.target_openlibrary_work }}" style="color:green;">openlibrary:{{ row.ref.target_openlibrary_work }}</a>&nbsp;
+ <a href="/openlibrary/{{ row.ref.target_openlibrary_work}}/refs-in" style="color:green;">[cited-by]</a>&nbsp;
+ {% endif %}
+ {% elif direction == "out" and row.ref.target_csl %}
+ {{ entity_macros.csl_summary(row.ref.target_csl) }}
+ {% else %}
+ <i>blank</i>
+ {% endif %}
+ <td class="center aligned">
+ {% if row.access %}
+ {% for access in row.access %}
+ <a href="{{ access.access_url}}" class="ui green label" style="background-color: #2ca048;">
+ {%- if access.access_type.name == "wayback" %}
+ web.archive.org
+ {%- elif access.access_type.name == "ia_file" -%}
+ archive.org
+ {%- else -%}
+ {{ access.access_type.name }}
+ {%- endif -%}
+ {%- if access.mimetype == "application/pdf" %}
+ [PDF]
+ {%- elif access.mimetype == "text/html" %}
+ [HTML]
+ {%- endif -%}
+ </a>
+ <br>
+ {% endfor %}
+ {% elif direction == "out" and row.ref.target_unstructured %}
+ <form class="ui form" id="reference_match" method="POST" action="/reference/match">
+ <input type="hidden" name="csrf_token" value="{{ csrf_token() }}"/>
+ <input type="hidden" name="raw_citation" value="{{ row.ref.target_unstructured }}">
+ <button class="ui tiny primary submit button" type="submit" name="submit_type" value="parse">
+ re-parse
+ </button>
+ </form>
+ {% endif %}
+{% endfor %}
+</tbody>
+<tfoot>
+ <tr><th colspan="3">
+ <div style="float: right;">
+ <a href="{{ request.path }}.json?{{ request.query_string.decode() }}">JSON</a>
+ </div>
+ {% if hits.count_returned != hits.count_total %}
+ <center>
+ {{ pagination_row(hits, with_links=True) }}
+ </center>
+ {% endif %}
+</tfoot>
+</table>
+{% endmacro %}
+
diff --git a/python/fatcat_web/templates/release_view.html b/python/fatcat_web/templates/release_view.html
index abf7ace0..4652f4a2 100644
--- a/python/fatcat_web/templates/release_view.html
+++ b/python/fatcat_web/templates/release_view.html
@@ -84,9 +84,9 @@
Published
{% if release.container.ident %}
in <a href="/container/{{ release.container.ident }}"><span itemprop="name">{{ release.container.name }}</span></a>
- {% elif release.extra and release.extra.container_name %}
+ {%- elif release.extra and release.extra.container_name %}
in <span itemprop="name">{{ release.extra.container_name }}</span>
- {% endif %}
+ {%- endif %}
{% else %}
Released
{% if release.release_type %}
@@ -95,26 +95,27 @@
{% if release.container %}
in <a href="/container/{{ release.container.ident }}"><span itemprop="name">{{ release.container.name }}</span></a>
{% endif %}
- {% endif %}
+ {% endif -%}
{% if release.publisher %}
by <span itemprop="publisher">{{ release.publisher }}</span>
{%- endif %}.
<p>
- {% if release.volume != None %}
- Volume {{ release.volume }}
- {%- if release.issue != None %}, {% endif %}
- {% endif %}
- {% if release.issue != None %}
- Issue {{ release.issue}}
+ {% set comma = joiner(", ") %}
+ {% if release.release_year != None %}
+ {{ release.release_year }} &nbsp;
{% endif %}
- {% if release.pages != None %}
+ {% if release.volume != None %}
+ {{- comma() }}Volume {{ release.volume -}}
+ {%- endif %}
+ {%- if release.issue != None %}
+ {{- comma() }}Issue {{ release.issue -}}
+ {%- endif %}
+ {%- if release.pages != None %}
+ {{- comma() }}
{% if release.pages[0].isdigit() %}p{% endif -%}
{{ release.pages }}
{% endif %}
- {% if release.release_year != None %}
- ({{ release.release_year }})
- {% endif %}
</div>
{% if release.abstracts != [] %}
diff --git a/python/fatcat_web/templates/release_view_fuzzy_refs.html b/python/fatcat_web/templates/release_view_fuzzy_refs.html
new file mode 100644
index 00000000..8cba4f4e
--- /dev/null
+++ b/python/fatcat_web/templates/release_view_fuzzy_refs.html
@@ -0,0 +1,27 @@
+{% set release = entity %}
+{% set entity_view = "refs-" + direction %}
+{% set entity_type = "release" %}
+{% import "refs_macros.html" as refs_macros %}
+{% extends "entity_base.html" %}
+
+
+{% block entity_main %}
+
+{% if direction == "in" %}
+ <h3>Cited By</h3>
+ <i>References to this release by other works.</i>
+{% elif direction == "out" %}
+ <h3>References</h3>
+ <i>NOTE: currently batch computed and may include additional references sources, or be missing recent changes, compared to entity reference list.</i>
+
+ {% if hits.count_total == 0 and release.refs %}
+ <div class="ui positive message">
+ <p>No <i>fuzzy</i> references found, but there are <a href="/release/{{ release.ident }}/references">{{ release.refs|count }} legacy references</a>
+ </div>
+ {% endif %}
+{% endif %}
+
+{{ refs_macros.refs_table(hits, direction) }}
+
+{% endblock %}
+
diff --git a/python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html b/python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html
new file mode 100644
index 00000000..3e1453c1
--- /dev/null
+++ b/python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html
@@ -0,0 +1,23 @@
+{% extends "base.html" %}
+{% import "refs_macros.html" as refs_macros %}
+
+{% block title %}Wikipedia Refs{% endblock %}
+
+{% block fullbody %}
+<h1 class="ui header">
+ [{{ wiki_lang }}] {{ wiki_article }}
+ <span class="sub header"><a href="{{ wiki_url }}"><code>{{ wiki_url }}</code></a></span>
+</h1>
+
+{% if direction == "in" %}
+ <h3>Cited By</h3>
+ <p>This page lists references to a wikipedia article, from other works (eg, journal articles).
+{% elif direction == "out" %}
+ <h3>References</h3>
+ <i>Refernces from wikipedia article to other entities.</i>
+{% endif %}
+
+{{ refs_macros.refs_table(hits, direction) }}
+
+{% endblock %}
+