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author | Bryan Newbold <bnewbold@robocracy.org> | 2019-05-22 16:20:09 -0700 |
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committer | Bryan Newbold <bnewbold@robocracy.org> | 2019-05-22 16:20:09 -0700 |
commit | b081f2af2c3f808a4b7f0672351c12428c83ce9e (patch) | |
tree | 6a18748a8b80a06b2fcc74da019de3eabe458380 /python/fatcat_tools | |
parent | 5af153683cdd9b883bc142a4bd7bb447612d494a (diff) | |
download | fatcat-b081f2af2c3f808a4b7f0672351c12428c83ce9e.tar.gz fatcat-b081f2af2c3f808a4b7f0672351c12428c83ce9e.zip |
pubmed: try to work around multi-edits
Diffstat (limited to 'python/fatcat_tools')
-rw-r--r-- | python/fatcat_tools/importers/pubmed.py | 16 |
1 files changed, 13 insertions, 3 deletions
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py index e5d413a7..923c5492 100644 --- a/python/fatcat_tools/importers/pubmed.py +++ b/python/fatcat_tools/importers/pubmed.py @@ -739,9 +739,19 @@ class PubmedImporter(EntityImporter): existing.ext_ids.pmcid = existing.ext_ids.pmcid or re.ext_ids.pmcid existing.refs = existing.refs or re.refs existing.extra['pubmed'] = re.extra['pubmed'] - self.api.update_release(self.get_editgroup_id(), existing.ident, existing) - self.counts['update'] += 1 - return False + try: + self.api.update_release(self.get_editgroup_id(), existing.ident, existing) + self.counts['update'] += 1 + except fatcat_client.rest.ApiException as err: + # there is a code path where we try to update the same release + # twice in a row; if that happens, just skip + # NOTE: API behavior might change in the future? + if "release_edit_editgroup_id_ident_id_key" in err.body: + self.counts['skip-update-conflict'] += 1 + else: + raise err + finally: + return False return True |