summaryrefslogtreecommitdiffstats
path: root/python/fatcat_tools/importers/pubmed.py
diff options
context:
space:
mode:
authorBryan Newbold <bnewbold@robocracy.org>2021-10-12 20:05:57 -0700
committerBryan Newbold <bnewbold@robocracy.org>2021-10-13 16:21:31 -0700
commit3052b094f2b3c1183abc17c9ca158eb6a8808a42 (patch)
tree815923722b54333d8aa7192c5923d0d90f334374 /python/fatcat_tools/importers/pubmed.py
parent85f4124d0c70b9fb55e6f549cfd906fcf8783c6f (diff)
downloadfatcat-3052b094f2b3c1183abc17c9ca158eb6a8808a42.tar.gz
fatcat-3052b094f2b3c1183abc17c9ca158eb6a8808a42.zip
python: partial importer utilization of new schema changes
Diffstat (limited to 'python/fatcat_tools/importers/pubmed.py')
-rw-r--r--python/fatcat_tools/importers/pubmed.py12
1 files changed, 9 insertions, 3 deletions
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py
index 0ff55c05..c34fd7d6 100644
--- a/python/fatcat_tools/importers/pubmed.py
+++ b/python/fatcat_tools/importers/pubmed.py
@@ -448,9 +448,14 @@ class PubmedImporter(EntityImporter):
journal = medline.Article.Journal
issnp = journal.find("ISSN", IssnType="Print")
if issnp:
- container_extra['issnp'] = issnp.string
- if not issnl:
+ issnp = clean_issn(issnp.string)
+ else:
+ issnp = None
+
+ if not issnl and issnp:
issnl = self.issn2issnl(issnp)
+ else:
+ issnl = None
if issnl:
container_id = self.lookup_issnl(issnl)
@@ -490,12 +495,13 @@ class PubmedImporter(EntityImporter):
if (container_id is None and self.create_containers and (issnl is not None)
and container_name):
# name, type, publisher, issnl
- # extra: issnp, issne, original_name, languages, country
+ # extra: original_name, languages, country
ce = fatcat_openapi_client.ContainerEntity(
name=container_name,
container_type='journal',
#NOTE: publisher not included
issnl=issnl,
+ issnp=issnp,
extra=(container_extra or None))
ce_edit = self.create_container(ce)
container_id = ce_edit.ident