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| author | Bryan Newbold <bnewbold@robocracy.org> | 2019-12-23 14:00:59 -0800 |
|---|---|---|
| committer | Bryan Newbold <bnewbold@robocracy.org> | 2019-12-23 14:00:59 -0800 |
| commit | 4c2ca53303a949c00707e0c552489930f059a54a (patch) | |
| tree | d3d59050e48efef6be5903f8e299d64743fc8c7b | |
| parent | 052907bf8af22a2638554b719410b10ac1a8f9b6 (diff) | |
| download | fatcat-4c2ca53303a949c00707e0c552489930f059a54a.tar.gz fatcat-4c2ca53303a949c00707e0c552489930f059a54a.zip | |
add regression test for medlinedate -> year parsing
| -rw-r--r-- | python/tests/files/pubmed_31393839.xml | 95 | ||||
| -rw-r--r-- | python/tests/import_pubmed.py | 7 |
2 files changed, 102 insertions, 0 deletions
diff --git a/python/tests/files/pubmed_31393839.xml b/python/tests/files/pubmed_31393839.xml new file mode 100644 index 00000000..644a02ec --- /dev/null +++ b/python/tests/files/pubmed_31393839.xml @@ -0,0 +1,95 @@ +<PubmedArticle> + <MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM"> + <PMID Version="1">31393839</PMID> + <DateCompleted> + <Year>2019</Year> + <Month>12</Month> + <Day>17</Day> + </DateCompleted> + <DateRevised> + <Year>2019</Year> + <Month>12</Month> + <Day>17</Day> + </DateRevised> + <Article PubModel="Print"> + <Journal> + <ISSN IssnType="Print">0022-3875</ISSN> + <JournalIssue CitedMedium="Print"> + <Volume>53</Volume> + <Issue>6</Issue> + <PubDate> + <MedlineDate>2019</MedlineDate> + </PubDate> + </JournalIssue> + <Title>Journal of clinical orthodontics : JCO</Title> + <ISOAbbreviation>J Clin Orthod</ISOAbbreviation> + </Journal> + <ArticleTitle>Career-Turning Moments.</ArticleTitle> + <Pagination> + <MedlinePgn>325</MedlinePgn> + </Pagination> + <AuthorList CompleteYN="Y"> + <Author ValidYN="Y"> + <LastName>Keim</LastName> + <ForeName>Robert G</ForeName> + <Initials>RG</Initials> + <AffiliationInfo> + <Affiliation>J Clin Orthod, Greenwood Village, CO.</Affiliation> + </AffiliationInfo> + </Author> + </AuthorList> + <Language>eng</Language> + <PublicationTypeList> + <PublicationType UI="D016428">Journal Article</PublicationType> + </PublicationTypeList> + </Article> + <MedlineJournalInfo> + <Country>United States</Country> + <MedlineTA>J Clin Orthod</MedlineTA> + <NlmUniqueID>0243471</NlmUniqueID> + <ISSNLinking>0022-3875</ISSNLinking> + </MedlineJournalInfo> + <CitationSubset>D</CitationSubset> + <MeshHeadingList> + <MeshHeading> + <DescriptorName UI="D001696" MajorTopicYN="N">Biomechanical Phenomena</DescriptorName> + </MeshHeading> + <MeshHeading> + <DescriptorName UI="D002321" MajorTopicYN="Y">Career Choice</DescriptorName> + </MeshHeading> + <MeshHeading> + <DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName> + </MeshHeading> + </MeshHeadingList> + </MedlineCitation> + <PubmedData> + <History> + <PubMedPubDate PubStatus="entrez"> + <Year>2019</Year> + <Month>8</Month> + <Day>9</Day> + <Hour>6</Hour> + <Minute>0</Minute> + </PubMedPubDate> + <PubMedPubDate PubStatus="pubmed"> + <Year>2019</Year> + <Month>8</Month> + <Day>9</Day> + <Hour>6</Hour> + <Minute>0</Minute> + </PubMedPubDate> + <PubMedPubDate PubStatus="medline"> + <Year>2019</Year> + <Month>12</Month> + <Day>18</Day> + <Hour>6</Hour> + <Minute>0</Minute> + </PubMedPubDate> + </History> + <PublicationStatus>ppublish</PublicationStatus> + <ArticleIdList> + <ArticleId IdType="pubmed">31393839</ArticleId> + </ArticleIdList> + </PubmedData> +</PubmedArticle> + diff --git a/python/tests/import_pubmed.py b/python/tests/import_pubmed.py index 0d551d02..49609f75 100644 --- a/python/tests/import_pubmed.py +++ b/python/tests/import_pubmed.py @@ -119,3 +119,10 @@ def test_pubmed_xml_parse(pubmed_importer): assert r2.refs[0].extra['unstructured'] == "Microbiology. 2009 Jun;155(Pt 6):1840-6" assert r2.refs[0].extra['pmid'] == "19383690" +def test_pubmed_xml_dates(pubmed_importer): + with open('tests/files/pubmed_31393839.xml', 'r') as f: + soup = BeautifulSoup(f, "xml") + r1 = pubmed_importer.parse_record(soup.find_all("PubmedArticle")[0]) + + assert r1.release_year == 2019 + |