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authorBryan Newbold <bnewbold@robocracy.org>2018-03-22 21:30:06 -0700
committerBryan Newbold <bnewbold@robocracy.org>2018-03-22 21:30:30 -0700
commitdaf21f0b80e1783ed1eb777a7b6a9c5618c069d7 (patch)
treebb4107e1b6647d0d9ac37e525be29b02b3982b70
parent33492754881a27c88f6a1ed38e463bba15ecf837 (diff)
downloadfatcat-daf21f0b80e1783ed1eb777a7b6a9c5618c069d7.tar.gz
fatcat-daf21f0b80e1783ed1eb777a7b6a9c5618c069d7.zip
restructure
-rw-r--r--Pipfile5
-rw-r--r--Pipfile.lock9
-rw-r--r--backend/config.py2
-rw-r--r--fatcat/__init__.py10
-rw-r--r--fatcat/api.py13
-rwxr-xr-xfatcat/backend.py301
-rw-r--r--fatcat/models.py158
-rw-r--r--[-rwxr-xr-x]fatcat/routes.py (renamed from fatcat/webface.py)38
-rw-r--r--fatcat/sql.py32
-rw-r--r--run.py27
-rw-r--r--tests/test_backend.py (renamed from fatcat/test_backend.py)16
11 files changed, 266 insertions, 345 deletions
diff --git a/Pipfile b/Pipfile
index 091e295a..adb2bbc2 100644
--- a/Pipfile
+++ b/Pipfile
@@ -11,9 +11,10 @@ name = "pypi"
[packages]
-flask = "*"
-sqlalchemy = "*"
+Flask = "*"
+SQLAlchemy = "*"
requests = "*"
+Flask-SQLAlchemy = "*"
[requires]
diff --git a/Pipfile.lock b/Pipfile.lock
index bef64e85..1f82a0dc 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "98d21978b677ea4ad82a3dc1b0aee77ca0c6af87bc4928f0341f2a0a04f47084"
+ "sha256": "a011142ad79cd80853e0212f35f6de603c33a616965f635d91fc521bf110be13"
},
"host-environment-markers": {
"implementation_name": "cpython",
@@ -57,6 +57,13 @@
],
"version": "==0.12.2"
},
+ "flask-sqlalchemy": {
+ "hashes": [
+ "sha256:3bc0fac969dd8c0ace01b32060f0c729565293302f0c4269beed154b46bec50b",
+ "sha256:5971b9852b5888655f11db634e87725a9031e170f37c0ce7851cf83497f56e53"
+ ],
+ "version": "==2.3.2"
+ },
"idna": {
"hashes": [
"sha256:8c7309c718f94b3a625cb648ace320157ad16ff131ae0af362c9f21b80ef6ec4",
diff --git a/backend/config.py b/backend/config.py
deleted file mode 100644
index d4196230..00000000
--- a/backend/config.py
+++ /dev/null
@@ -1,2 +0,0 @@
-
-DATABASE_URI = "sqlite:///test.sqlite"
diff --git a/fatcat/__init__.py b/fatcat/__init__.py
new file mode 100644
index 00000000..230fd608
--- /dev/null
+++ b/fatcat/__init__.py
@@ -0,0 +1,10 @@
+
+from flask import Flask
+from config import Config
+from flask_sqlalchemy import SQLAlchemy
+
+app = Flask(__name__)
+app.config.from_object(Config)
+db = SQLAlchemy(app)
+
+from fatcat import routes, models, api, sql
diff --git a/fatcat/api.py b/fatcat/api.py
new file mode 100644
index 00000000..d09eedd5
--- /dev/null
+++ b/fatcat/api.py
@@ -0,0 +1,13 @@
+
+from flask import Flask, render_template, send_from_directory, request, \
+ url_for, abort, g, redirect, jsonify
+from fatcat import app, db
+from fatcat.models import *
+
+
+### Views ###################################################################
+
+@app.route('/work/<work_id>', methods=['GET'])
+def work_get():
+ work = WorkId.query.filter_by(id=work_id).first_or_404()
+ return jsonify(work)
diff --git a/fatcat/backend.py b/fatcat/backend.py
deleted file mode 100755
index a39ae790..00000000
--- a/fatcat/backend.py
+++ /dev/null
@@ -1,301 +0,0 @@
-
-import argparse
-from flask import Flask, render_template, send_from_directory, request, \
- url_for, abort, g, redirect, jsonify
-from sqlalchemy import create_engine, MetaData, Table
-
-app = Flask(__name__)
-app.config.from_object(__name__)
-
-# Load default config and override config from an environment variable
-app.config.update(dict(
- DATABASE_URI='sqlite://:memory:',
- SECRET_KEY='development-key',
- USERNAME='admin',
- PASSWORD='admin'
-))
-app.config.from_envvar('FATCAT_BACKEND_CONFIG', silent=True)
-
-metadata = MetaData()
-
-
-## SQL Schema ###############################################################
-
-import enum
-from sqlalchemy import Table, Column, Integer, String, MetaData, ForeignKey, \
- Enum
-
-# TODO: http://docs.sqlalchemy.org/en/latest/orm/extensions/declarative/mixins.html
-
-class IdState(enum.Enum):
- normal = 1
- redirect = 2
- removed = 3
-
-work_id = Table('work_id', metadata,
- Column('id', Integer, primary_key=True, autoincrement=False),
- Column('revision', ForeignKey('work_revision.id')),
- )
-
-work_revision = Table('work_revision', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('previous', ForeignKey('work_revision.id'), nullable=True),
- Column('state', Enum(IdState)),
- Column('redirect_id', ForeignKey('work_id.id'), nullable=True),
- Column('edit_id', ForeignKey('edit.id')),
- Column('extra_json', ForeignKey('extra_json.sha1'), nullable=True),
-
- Column('title', String),
- Column('work_type', String),
- Column('date', String),
- )
-
-release_id = Table('release_id', metadata,
- Column('id', Integer, primary_key=True, autoincrement=False),
- Column('revision', ForeignKey('release_revision.id')),
- )
-
-release_revision = Table('release_revision', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('previous', ForeignKey('release_revision.id'), nullable=True),
- Column('state', Enum(IdState)),
- Column('redirect_id', ForeignKey('release_id.id'), nullable=True),
- Column('edit_id', ForeignKey('edit.id')),
- Column('extra_json', ForeignKey('extra_json.sha1'), nullable=True),
-
- #Column('work', ForeignKey('work_id.id')),
- Column('container', ForeignKey('container_id.id')),
- Column('title', String),
- Column('license', String), # TODO: oa status foreign key
- Column('release_type', String), # TODO: foreign key
- Column('date', String), # TODO: datetime
- Column('doi', String), # TODO: identifier table
- )
-
-creator_id = Table('creator_id', metadata,
- Column('id', Integer, primary_key=True, autoincrement=False),
- Column('revision', ForeignKey('creator_revision.id')),
- )
-
-creator_revision = Table('creator_revision', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('previous', ForeignKey('creator_revision.id'), nullable=True),
- Column('state', Enum(IdState)),
- Column('redirect_id', ForeignKey('creator_id.id'), nullable=True),
- Column('edit_id', ForeignKey('edit.id')),
- Column('extra_json', ForeignKey('extra_json.sha1'), nullable=True),
-
- Column('name', String),
- Column('sortname', String),
- Column('orcid', String), # TODO: identifier table
- )
-
-work_contrib = Table('work_contrib', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('work_rev', ForeignKey('work_revision.id'), nullable=False),
- Column('creator_id', ForeignKey('creator_id.id'), nullable=False),
- Column('stub', String, nullable=False),
- )
-
-release_contrib = Table('release_contrib', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('release_rev', ForeignKey('release_revision.id'), nullable=False),
- Column('creator_id', ForeignKey('creator_id.id'), nullable=False),
- )
-
-container_id = Table('container_id', metadata,
- Column('id', Integer, primary_key=True, autoincrement=False),
- Column('revision', ForeignKey('container_revision.id')),
- )
-
-container_revision = Table('container_revision', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('previous', ForeignKey('container_revision.id'), nullable=True),
- Column('state', Enum(IdState)),
- Column('redirect_id', ForeignKey('container_id.id'), nullable=True),
- Column('edit_id', ForeignKey('edit.id')),
- Column('extra_json', ForeignKey('extra_json.sha1'), nullable=True),
-
- Column('name', String),
- Column('container', ForeignKey('container_id.id')),
- Column('publisher', String), # TODO: foreign key
- Column('sortname', String),
- Column('issn', String), # TODO: identifier table
- )
-
-file_id = Table('file_id', metadata,
- Column('id', Integer, primary_key=True, autoincrement=False),
- Column('revision', ForeignKey('container_revision.id')),
- )
-
-file_revision = Table('file_revision', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('previous', ForeignKey('file_revision.id'), nullable=True),
- Column('state', Enum(IdState)),
- Column('redirect_id', ForeignKey('file_id.id'), nullable=True),
- Column('edit_id', ForeignKey('edit.id')),
- Column('extra_json', ForeignKey('extra_json.sha1'), nullable=True),
-
- Column('size', Integer),
- Column('sha1', Integer), # TODO: hash table... only or in addition?
- Column('url', Integer), # TODO: URL table
- )
-
-release_file= Table('release_file', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('release_rev', ForeignKey('release_revision.id'), nullable=False),
- Column('file_id', ForeignKey('file_id.id'), nullable=False),
- )
-
-edit = Table('edit', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('edit_group', ForeignKey('edit_group.id')),
- Column('editor', ForeignKey('editor.id')),
- Column('description', String),
- )
-
-edit_group = Table('edit_group', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('editor', ForeignKey('editor.id')),
- Column('description', String),
- )
-
-editor = Table('editor', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('username', String),
- )
-
-changelog = Table('changelog', metadata,
- Column('id', Integer, primary_key=True, autoincrement=True),
- Column('edit_id', ForeignKey('edit.id')),
- Column('timestamp', Integer),
- )
-
-extra_json = Table('extra_json', metadata,
- Column('sha1', String, primary_key=True, autoincrement=True),
- Column('json', String),
- )
-
-## Helpers ##################################################################
-
-def is_fcid(s):
- return len(s) == 26 and s.isalnum()
-
-# XXX: why isn't this running?
-def test_is_fcid():
-
- for s in ("rzga5b9cd7efgh04iljk", "RZGA5B9CD7Efgh04iljk"):
- assert is_fcid() is True
-
- for s in ("rzga59cd7efgh04iljk", "rzga.b9cd7efgh04iljk", "",
- "rzga5b9cd7efgh04iljkz"):
- assert is_fcid() is False
-
-def release_list(id_list):
- # XXX: MOCK
- l = []
- for i in id_list:
- l.append({
- "id": i,
- "rev": "8fkj28fjhqkjdhkjkj9s",
- "previous": "0021jdfjhqkjdhkjkj9s",
- "state": "normal",
- "redirect_id": None,
- "edit_id": "932582iuhckjvssk",
- "extra_json": None,
-
- "container_id": "0021jdfjhqkjdhkjkj9s",
- "title": "Mocks are great",
- "license": "CC-0",
- "release_type": "publication",
- "date": "2017-11-22",
- "doi": "10.1000/953kj.sdfkj",
- })
- return l
-
-def release_hydrate(release_id):
- e = release_list([release_id])[0]
- e['container'] = container_hydrate(d['container_id'])
- e.pop('container_id')
- e['creators'] = [creator_hydrate(c['id']) for c in e['creator_ids']]
- return e
-
-def work_list(id_list):
- """This is the fast/light version: populates entity-specific lists (eg,
- identifiers), and any primaries, but doesn't transclude all other
- entities"""
- if len(id_list) == 0:
- return []
-
- l = []
- for i in id_list:
- l.append({
- "id": "rzga5b9cd7efgh04iljk",
- "rev": "8fkj28fjhqkjdhkjkj9s",
- "previous": "0021jdfjhqkjdhkjkj9s",
- "state": "normal",
- "redirect_id": None,
- "edit_id": "932582iuhckjvssk",
- "extra_json": None,
-
- "title": "Mocks are great",
- "contributors": [],
- "work_type": "journal-article",
- "date": None,
-
- "primary_release": release_list(["8fkj28fjhqkjdhkjkj9s"])[0],
- })
- return l
-
-def work_hydrate(work_id):
- """This is the heavy/slowversion: everything from get_works(), but also
- recursively transcludes single-linked entities"""
- # XXX:
- return work_list([work_id])[0]
-
-## API Methods ##############################################################
-
-@app.route('/health', methods=['GET'])
-def health():
- return jsonify({'ok': True})
-
-
-@app.route('/v0/work/<work_id>', methods=['GET'])
-def work_get(work_id):
- if not is_fcid(work_id):
- print("not fcid: {}".format(work_id))
- return abort(404)
- work = work_hydrate(work_id)
- return jsonify(work)
-
-## Entry Point ##############################################################
-
-def main():
- parser = argparse.ArgumentParser()
- parser.add_argument('--debug',
- action='store_true',
- help="enable debugging interface")
- parser.add_argument('--host',
- default="127.0.0.1",
- help="listen on this host/IP")
- parser.add_argument('--port',
- type=int,
- default=8040,
- help="listen on this port")
- parser.add_argument('--database-uri',
- default=app.config['DATABASE_URI'],
- help="sqlalchemy database string")
- args = parser.parse_args()
-
- app.config['DATABASE_URI'] = args.database_uri
- app.conn = create_engine(app.config['DATABASE_URI'], convert_unicode=True)
- metadata.create_all(bind=engine)
-
- # XXX:
- db_test_data()
-
- app.run(debug=args.debug, host=args.host, port=args.port)
-
-
-if __name__ == '__main__':
- main()
diff --git a/fatcat/models.py b/fatcat/models.py
new file mode 100644
index 00000000..dd84070d
--- /dev/null
+++ b/fatcat/models.py
@@ -0,0 +1,158 @@
+
+import enum
+from fatcat import db
+
+
+# TODO: EntityMixin, EntityIdMixin
+
+work_contrib = db.Table("work_contrib",
+ db.Column("work_rev", db.ForeignKey('work_revision.id'), nullable=False, primary_key=True),
+ db.Column("creator_id", db.ForeignKey('creator_id.id'), nullable=False, primary_key=True),
+ db.Column("stub", db.String, nullable=True))
+
+release_contrib = db.Table("release_contrib",
+ db.Column("release_rev", db.ForeignKey('release_revision.id'), nullable=False, primary_key=True),
+ db.Column("creator_id", db.ForeignKey('creator_id.id'), nullable=False, primary_key=True),
+ db.Column("stub", db.String, nullable=True))
+
+class WorkId(db.Model):
+ __tablename__ = 'work_id'
+ id = db.Column(db.Integer, primary_key=True)
+ revision_id = db.Column(db.ForeignKey('work_revision.id'))
+
+class WorkRevision(db.Model):
+ __tablename__ = 'work_revision'
+ id = db.Column(db.Integer, primary_key=True)
+ previous = db.Column(db.ForeignKey('work_revision.id'), nullable=True)
+ state = db.Column(db.String)
+ redirect_id = db.Column(db.ForeignKey('work_id.id'), nullable=True)
+ edit_id = db.Column(db.ForeignKey('edit.id'))
+ extra_json = db.Column(db.ForeignKey('extra_json.sha1'), nullable=True)
+ #work_ids = db.relationship("WorkId", backref="revision", lazy=True)
+
+ title = db.Column(db.String)
+ work_type = db.Column(db.String)
+ date = db.Column(db.String)
+
+ creators = db.relationship('CreatorId', secondary=work_contrib,
+ lazy='subquery', backref=db.backref('works', lazy=True))
+
+class ReleaseId(db.Model):
+ __tablename__ = 'release_id'
+ id = db.Column(db.Integer, primary_key=True) #autoincrement=False
+ revision_id = db.Column(db.ForeignKey('release_revision.id'))
+
+class ReleaseRevision(db.Model):
+ __tablename__ = 'release_revision'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ previous = db.Column(db.ForeignKey('release_revision.id'), nullable=True)
+ state = db.Column(db.String) # TODO: enum
+ redirect_id = db.Column(db.ForeignKey('release_id.id'), nullable=True)
+ edit_id = db.Column(db.ForeignKey('edit.id'))
+ extra_json = db.Column(db.ForeignKey('extra_json.sha1'), nullable=True)
+ #release_ids = db.relationship("ReleaseId", backref="revision", lazy=False)
+
+ work_id = db.ForeignKey('work_id.id')
+ container = db.Column(db.ForeignKey('container_id.id'))
+ title = db.Column(db.String)
+ license = db.Column(db.String) # TODO: oa status foreign key
+ release_type = db.Column(db.String) # TODO: foreign key
+ date = db.Column(db.String) # TODO: datetime
+ doi = db.Column(db.String) # TODO: identifier table
+
+ creators = db.relationship('CreatorId', secondary=release_contrib,
+ lazy='subquery')
+ #backref=db.backref('releases', lazy=True))
+
+class CreatorId(db.Model):
+ __tablename__ = 'creator_id'
+ id = db.Column(db.Integer, primary_key=True) #autoincrement=False)
+ revision_id = db.Column(db.ForeignKey('creator_revision.id'))
+
+class CreatorRevision(db.Model):
+ __tablename__ = 'creator_revision'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ previous = db.Column(db.ForeignKey('creator_revision.id'), nullable=True)
+ state = db.Column(db.String)
+ redirect_id = db.Column(db.ForeignKey('creator_id.id'), nullable=True)
+ edit_id = db.Column(db.ForeignKey('edit.id'))
+ extra_json = db.Column(db.ForeignKey('extra_json.sha1'), nullable=True)
+ #creator_ids = db.relationship("CreatorId", backref="revision", lazy=False)
+
+ name = db.Column(db.String)
+ sortname = db.Column(db.String)
+ orcid = db.Column(db.String) # TODO: identifier table
+
+class ContainerId(db.Model):
+ __tablename__ = 'container_id'
+ id = db.Column(db.Integer, primary_key=True) #autoincrement=False)
+ revision_id = db.Column(db.ForeignKey('container_revision.id'))
+
+class ContainerRevision(db.Model):
+ __tablename__ = 'container_revision'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ previous = db.Column(db.ForeignKey('container_revision.id'), nullable=True)
+ state = db.Column(db.String)
+ redirect_id = db.Column(db.ForeignKey('container_id.id'), nullable=True)
+ edit_id = db.Column(db.ForeignKey('edit.id'))
+ extra_json = db.Column(db.ForeignKey('extra_json.sha1'), nullable=True)
+
+ name = db.Column(db.String)
+ container = db.Column(db.ForeignKey('container_id.id'))
+ publisher = db.Column(db.String) # TODO: foreign key
+ sortname = db.Column(db.String)
+ issn = db.Column(db.String) # TODO: identifier table
+
+class FileId(db.Model):
+ __tablename__ = 'file_id'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=False)
+ revision_id = db.Column('revision', db.ForeignKey('container_revision.id'))
+
+class FileRevision(db.Model):
+ __tablename__ = 'file_revision'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ previous = db.Column(db.ForeignKey('file_revision.id'), nullable=True)
+ state = db.Column(db.String)
+ redirect_id = db.Column(db.ForeignKey('file_id.id'), nullable=True)
+ edit_id = db.Column(db.ForeignKey('edit.id'))
+ extra_json = db.Column(db.ForeignKey('extra_json.sha1'), nullable=True)
+
+ size = db.Column(db.Integer)
+ sha1 = db.Column(db.Integer) # TODO: hash table... only or in addition?
+ url = db.Column(db.Integer) # TODO: URL table
+
+class ReleaseFil(db.Model):
+ __tablename__ = 'release_file'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ release_rev = db.Column(db.ForeignKey('release_revision.id'), nullable=False)
+ file_id = db.Column(db.ForeignKey('file_id.id'), nullable=False)
+
+class Edit(db.Model):
+ __tablename__ = 'edit'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ edit_group = db.Column(db.ForeignKey('edit_group.id'))
+ editor = db.Column(db.ForeignKey('editor.id'))
+ description = db.Column(db.String)
+
+class EditGroup(db.Model):
+ __tablename__ = 'edit_group'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ editor = db.Column(db.ForeignKey('editor.id'))
+ description = db.Column(db.String)
+
+class Editor(db.Model):
+ __tablename__ = 'editor'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ username = db.Column(db.String)
+
+class ChangelogEntry(db.Model):
+ __tablename__= 'changelog'
+ id = db.Column(db.Integer, primary_key=True, autoincrement=True)
+ edit_id = db.Column(db.ForeignKey('edit.id'))
+ timestamp = db.Column(db.Integer)
+
+class ExtraJson(db.Model):
+ __tablename__ = 'extra_json'
+ sha1 = db.Column(db.String, primary_key=True)
+ json = db.Column(db.String)
+
diff --git a/fatcat/webface.py b/fatcat/routes.py
index 33833e25..61228638 100755..100644
--- a/fatcat/webface.py
+++ b/fatcat/routes.py
@@ -1,21 +1,12 @@
-#!/usr/bin/env python3
import os
-import argparse
-import requests
from flask import Flask, render_template, send_from_directory, request, \
url_for, abort, g, redirect, jsonify
-
-app = Flask(__name__)
-app.config.from_object(__name__)
+from fatcat import app, db
### Views ###################################################################
-@app.route('/health', methods=['GET'])
-def health():
- return jsonify({'ok': True})
-
@app.route('/work/create', methods=['GET'])
def work_create():
return render_template('work_add.html')
@@ -61,27 +52,6 @@ def robots():
'robots.txt',
mimetype='text/plain')
-
-### Entry Point #############################################################
-
-def main():
- parser = argparse.ArgumentParser()
- parser.add_argument('--debug',
- action='store_true',
- help="enable debugging interface")
- parser.add_argument('--host',
- default="127.0.0.1",
- help="listen on this host/IP")
- parser.add_argument('--port',
- type=int,
- default=5050,
- help="listen on this port")
- parser.add_argument('--backend-api',
- default="localhost:6060",
- help="backend API to connect to")
- args = parser.parse_args()
-
- app.run(debug=args.debug, host=args.host, port=args.port)
-
-if __name__ == '__main__':
- main()
+@app.route('/health', methods=['GET'])
+def health():
+ return jsonify({'ok': True})
diff --git a/fatcat/sql.py b/fatcat/sql.py
new file mode 100644
index 00000000..01da5873
--- /dev/null
+++ b/fatcat/sql.py
@@ -0,0 +1,32 @@
+
+from fatcat import app, db
+from fatcat.models import *
+
+def populate_db():
+
+ # XXX: doesn't create an edit trail (yet)
+ n_elkies = CreatorRevision(
+ name="Noam D. Elkies",
+ sortname="Elkies, N",
+ orcid=None)
+ n_elkies_id = CreatorId(revision_id=n_elkies.id)
+ pi_work = WorkRevision(
+ title="Why is π 2so close to 10?")
+ pi_work_id = WorkId(revision_id=pi_work.id)
+ pi_release = ReleaseRevision(
+ title=pi_work.title,
+ creators=[n_elkies_id],
+ work_id=pi_work.id)
+ pi_release_id = ReleaseId(revision_id=pi_release.id)
+ pi_work.primary_release = pi_release.id
+
+ #pi_file = File(
+ # sha1="efee52e46c86691e2b892dbeb212f3b92e92e9d3",
+ # url="http://www.math.harvard.edu/~elkies/Misc/pi10.pdf")
+ db.session.add_all([n_elkies, pi_work, pi_work_id, pi_release, pi_release_id])
+
+ #ligo_collab = CreatorRevision(name="LIGO Scientific Collaboration")
+ #ligo_paper = ReleaseRevision(
+ # title="Full Band All-sky Search for Periodic Gravitational Waves in the O1 LIGO Data")
+ db.session.commit()
+
diff --git a/run.py b/run.py
new file mode 100644
index 00000000..c8f492ea
--- /dev/null
+++ b/run.py
@@ -0,0 +1,27 @@
+
+import argparse
+from fatcat import app, db
+
+def main():
+ parser = argparse.ArgumentParser()
+ parser.add_argument('--debug',
+ action='store_true',
+ help="enable debugging interface")
+ parser.add_argument('--host',
+ default="127.0.0.1",
+ help="listen on this host/IP")
+ parser.add_argument('--port',
+ type=int,
+ default=8040,
+ help="listen on this port")
+ parser.add_argument('--database-uri',
+ default=app.config['DATABASE_URI'],
+ help="sqlalchemy database string")
+ args = parser.parse_args()
+
+ app.config['DATABASE_URI'] = args.database_uri
+ db.create_all()
+ app.run(debug=args.debug, host=args.host, port=args.port)
+
+if __name__ == '__main__':
+ main()
diff --git a/fatcat/test_backend.py b/tests/test_backend.py
index 429b5ae7..afc6215d 100644
--- a/fatcat/test_backend.py
+++ b/tests/test_backend.py
@@ -1,7 +1,8 @@
import os
import json
-import backend
+import fatcat
+import fatcat.sql
import unittest
import tempfile
from nose.tools import *
@@ -22,12 +23,13 @@ def check_entity_fields(e):
## API Tests ################################################################
-class BackendTestCase(unittest.TestCase):
+class FatcatTestCase(unittest.TestCase):
def setUp(self):
- backend.app.config['DATABASE_URI'] = 'sqlite://:memory:'
- backend.app.testing = True
- self.app = backend.app.test_client()
+ fatcat.app.config['DATABASE_URI'] = 'sqlite://:memory:'
+ fatcat.app.testing = True
+ self.app = fatcat.app.test_client()
+ fatcat.db.create_all()
def test_health(self):
rv = self.app.get('/health')
@@ -51,3 +53,7 @@ class BackendTestCase(unittest.TestCase):
check_entity_fields(obj)
assert obj['title']
assert_equal(obj['work_type'], "journal-article")
+
+ def test_something(self):
+
+ fatcat.sql.populate_db()