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| author | Bryan Newbold <bnewbold@robocracy.org> | 2019-05-29 15:08:03 -0700 |
|---|---|---|
| committer | Bryan Newbold <bnewbold@robocracy.org> | 2019-05-29 15:08:03 -0700 |
| commit | a73065f7ee22cc02d70d8e144af39954b9c6594a (patch) | |
| tree | 8d591b50c6c547f41a70b04b73fb54c173340b90 | |
| parent | ca956fc8b686adc3198eff58bbc8e32e13f9ec47 (diff) | |
| download | fatcat-a73065f7ee22cc02d70d8e144af39954b9c6594a.tar.gz fatcat-a73065f7ee22cc02d70d8e144af39954b9c6594a.zip | |
handle empty retraction_of.PMID in pubmed importer
| -rw-r--r-- | python/fatcat_tools/importers/pubmed.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py index 1246bf6b..9a9849ed 100644 --- a/python/fatcat_tools/importers/pubmed.py +++ b/python/fatcat_tools/importers/pubmed.py @@ -401,8 +401,10 @@ class PubmedImporter(EntityImporter): release_type = "retraction" retraction_of = medline.find("CommentsCorrections", RefType="RetractionOf") if retraction_of: - extra_pubmed['retraction_of_raw'] = retraction_of.RefSource.string - extra_pubmed['retraction_of_pmid'] = retraction_of.PMID.string + if retraction_of.RefSource: + extra_pubmed['retraction_of_raw'] = retraction_of.RefSource.string + if retraction_of.PMID: + extra_pubmed['retraction_of_pmid'] = retraction_of.PMID.string # everything in medline is published release_stage = "published" |