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import json
from fatcat_openapi_client import ReleaseEntity
from fatcat_scholar.grobid2json import teixml2json
from fatcat_scholar.transform import refs_from_crossref, refs_from_grobid
def test_transform_refs_grobid() -> None:
with open("tests/files/example_grobid.tei.xml", "r") as f:
blob = f.read()
dummy_release = ReleaseEntity(
ident="releasedummy22222222222222",
work_id="workdummy22222222222222222",
release_year=1234,
release_stage="accepted",
ext_ids={},
)
tei_dict = teixml2json(blob, True)
refs = refs_from_grobid(dummy_release, tei_dict)
ref = refs[12]
assert ref.release_ident == "releasedummy22222222222222"
assert ref.work_ident == "workdummy22222222222222222"
assert ref.release_stage == "accepted"
assert ref.release_year == 1234
assert ref.ref_source == "grobid"
assert ref.key == "b12"
assert ref.index == 13
assert ref.locator == None
assert ref.biblio.contrib_raw_names is not None
assert ref.biblio.contrib_raw_names[0] == "K Tasa"
assert ref.biblio.container_name == "Quality Management in Health Care"
assert ref.biblio.title == "Using patient feedback for quality improvement"
assert ref.biblio.year == 1996
assert ref.biblio.pages == "206-225"
assert ref.biblio.volume == "8"
assert (
ref.biblio.unstructured
== "Tasa K, Baker R, Murray M. Using patient feedback for qua- lity improvement. Quality Management in Health Care 1996;8:206-19."
)
def test_transform_refs_crossref() -> None:
with open("tests/files/example_crossref_record.json", "r") as f:
record = json.loads(f.read())
dummy_release = ReleaseEntity(
ident="releasedummy22222222222222",
work_id="workdummy22222222222222222",
release_year=1234,
release_stage="accepted",
ext_ids={},
)
refs = refs_from_crossref(dummy_release, record)
assert refs[0].release_ident == "releasedummy22222222222222"
assert refs[0].work_ident == "workdummy22222222222222222"
assert refs[0].release_stage == "accepted"
assert refs[0].release_year == 1234
assert refs[0].ref_source == "crossref"
assert refs[0].key == "BIB0001|his12200-cit-0001"
assert refs[0].index == 1
assert refs[0].locator is None
assert refs[0].biblio.contrib_raw_names is not None
assert refs[0].biblio.contrib_raw_names[0] == "Churg"
assert refs[0].biblio.container_name == "Arch. Pathol. Lab. Med."
assert (
refs[0].biblio.title
== "The separation of benign and malignant mesothelial proliferations"
)
assert refs[0].biblio.year == 2012
assert refs[0].biblio.pages == "1217"
assert refs[0].biblio.volume == "136"
assert refs[0].biblio.doi == "10.5858/arpa.2012-0112-ra"
assert refs[0].biblio.unstructured is None
assert (
refs[6].biblio.title
== "Advances in Laser Remote Sensing – Selected Papers Presented at the 20th International Laser Radar Conference"
)
assert refs[6].biblio.year == 2001
assert refs[7].key == "CIT0041"
assert (
refs[7].biblio.unstructured
== "Linda Weiss,Creating Capitalism. Oxford: Blackwell, 1988. 272 pp. £29.95. ISBN 0 631 15733 6."
)
assert refs[8].key == "576_CR3"
assert refs[8].biblio.unstructured is not None
assert refs[8].biblio.title == "The NURBS Book, Monographs in Visual Communication"
assert refs[8].biblio.year == 1997
assert refs[8].biblio.version == "2"
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