import json from fatcat_openapi_client import ReleaseEntity from fatcat_scholar.grobid2json import teixml2json from fatcat_scholar.transform import refs_from_crossref, refs_from_grobid def test_transform_refs_grobid() -> None: with open("tests/files/example_grobid.tei.xml", "r") as f: blob = f.read() dummy_release = ReleaseEntity( ident="releasedummy22222222222222", work_id="workdummy22222222222222222", release_year=1234, release_stage="accepted", ext_ids={}, ) tei_dict = teixml2json(blob, True) refs = refs_from_grobid(dummy_release, tei_dict) ref = refs[12] assert ref.release_ident == "releasedummy22222222222222" assert ref.work_ident == "workdummy22222222222222222" assert ref.release_stage == "accepted" assert ref.release_year == 1234 assert ref.ref_source == "grobid" assert ref.key == "b12" assert ref.index == 13 assert ref.locator is None assert ref.biblio.contrib_raw_names is not None assert ref.biblio.contrib_raw_names[0] == "K Tasa" assert ref.biblio.container_name == "Quality Management in Health Care" assert ref.biblio.title == "Using patient feedback for quality improvement" assert ref.biblio.year == 1996 assert ref.biblio.pages == "206-225" assert ref.biblio.volume == "8" assert ( ref.biblio.unstructured == "Tasa K, Baker R, Murray M. Using patient feedback for qua- lity improvement. Quality Management in Health Care 1996;8:206-19." ) def test_transform_refs_crossref() -> None: with open("tests/files/example_crossref_record.json", "r") as f: record = json.loads(f.read()) dummy_release = ReleaseEntity( ident="releasedummy22222222222222", work_id="workdummy22222222222222222", release_year=1234, release_stage="accepted", ext_ids={}, ) refs = refs_from_crossref(dummy_release, record) assert refs[0].release_ident == "releasedummy22222222222222" assert refs[0].work_ident == "workdummy22222222222222222" assert refs[0].release_stage == "accepted" assert refs[0].release_year == 1234 assert refs[0].ref_source == "crossref" assert refs[0].key == "BIB0001|his12200-cit-0001" assert refs[0].index == 1 assert refs[0].locator is None assert refs[0].biblio.contrib_raw_names is not None assert refs[0].biblio.contrib_raw_names[0] == "Churg" assert refs[0].biblio.container_name == "Arch. Pathol. Lab. Med." assert ( refs[0].biblio.title == "The separation of benign and malignant mesothelial proliferations" ) assert refs[0].biblio.year == 2012 assert refs[0].biblio.pages == "1217" assert refs[0].biblio.volume == "136" assert refs[0].biblio.doi == "10.5858/arpa.2012-0112-ra" assert refs[0].biblio.unstructured is None assert ( refs[6].biblio.title == "Advances in Laser Remote Sensing – Selected Papers Presented at the 20th International Laser Radar Conference" ) assert refs[6].biblio.year == 2001 assert refs[7].key == "CIT0041" assert ( refs[7].biblio.unstructured == "Linda Weiss,Creating Capitalism. Oxford: Blackwell, 1988. 272 pp. £29.95. ISBN 0 631 15733 6." ) assert refs[8].key == "576_CR3" assert refs[8].biblio.unstructured is not None assert refs[8].biblio.title == "The NURBS Book, Monographs in Visual Communication" assert refs[8].biblio.year == 1997 assert refs[8].biblio.version == "2"