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-rw-r--r--tests/files/example_crossref_record.json225
-rw-r--r--tests/test_refs_transform.py50
2 files changed, 274 insertions, 1 deletions
diff --git a/tests/files/example_crossref_record.json b/tests/files/example_crossref_record.json
new file mode 100644
index 0000000..d87c7c2
--- /dev/null
+++ b/tests/files/example_crossref_record.json
@@ -0,0 +1,225 @@
+{
+ "doi": "10.1515/jpm-2019-0016",
+ "record":
+{
+ "DOI": "10.1111/his.12200",
+ "ISSN": [
+ "0309-0167"
+ ],
+ "URL": "http://dx.doi.org/10.1111/his.12200",
+ "author": [
+ {
+ "affiliation": [],
+ "family": "Stewart",
+ "given": "Colin J R"
+ }
+ ],
+ "container-title": [
+ "Histopathology"
+ ],
+ "content-domain": {
+ "crossmark-restriction": false,
+ "domain": []
+ },
+ "created": {
+ "date-parts": [
+ [
+ 2013,
+ 6,
+ 3
+ ]
+ ],
+ "date-time": "2013-06-03T16:37:56Z",
+ "timestamp": 1370277476000
+ },
+ "deposited": {
+ "date-parts": [
+ [
+ 2017,
+ 6,
+ 21
+ ]
+ ],
+ "date-time": "2017-06-21T14:04:36Z",
+ "timestamp": 1498053876000
+ },
+ "indexed": {
+ "date-parts": [
+ [
+ 2020,
+ 7,
+ 28
+ ]
+ ],
+ "date-time": "2020-07-28T14:37:55Z",
+ "timestamp": 1595947075455
+ },
+ "is-referenced-by-count": 0,
+ "issn-type": [
+ {
+ "type": "print",
+ "value": "0309-0167"
+ }
+ ],
+ "issued": {
+ "date-parts": [
+ [
+ 2013,
+ 7
+ ]
+ ]
+ },
+ "license": [
+ {
+ "URL": "http://doi.wiley.com/10.1002/tdm_license_1.1",
+ "content-version": "tdm",
+ "delay-in-days": 792,
+ "start": {
+ "date-parts": [
+ [
+ 2015,
+ 9,
+ 1
+ ]
+ ],
+ "date-time": "2015-09-01T00:00:00Z",
+ "timestamp": 1441065600000
+ }
+ }
+ ],
+ "link": [
+ {
+ "URL": "https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fhis.12200",
+ "content-type": "unspecified",
+ "content-version": "vor",
+ "intended-application": "text-mining"
+ }
+ ],
+ "member": "311",
+ "original-title": [],
+ "page": "n/a-n/a",
+ "prefix": "10.1111",
+ "published-online": {
+ "date-parts": [
+ [
+ 2013,
+ 7,
+ 16
+ ]
+ ]
+ },
+ "published-print": {
+ "date-parts": [
+ [
+ 2013,
+ 7
+ ]
+ ]
+ },
+ "publisher": "Wiley",
+ "reference": [
+ {
+ "DOI": "10.5858/arpa.2012-0112-RA",
+ "article-title": "The separation of benign and malignant mesothelial proliferations",
+ "author": "Churg",
+ "doi-asserted-by": "crossref",
+ "first-page": "1217",
+ "journal-title": "Arch. Pathol. Lab. Med.",
+ "key": "10.1111/his.12200-BIB0001|his12200-cit-0001",
+ "volume": "136",
+ "year": "2012"
+ },
+ {
+ "DOI": "10.1136/jcp.2010.086074",
+ "article-title": "Peritoneal mesothelial hyperplasia associated with gynaecological disease: a potential diagnostic pitfall that is commonly associated with endometriosis",
+ "author": "Opraka",
+ "doi-asserted-by": "crossref",
+ "first-page": "313",
+ "journal-title": "J. Clin. Pathol.",
+ "key": "10.1111/his.12200-BIB0002|his12200-cit-0002",
+ "volume": "64",
+ "year": "2011"
+ },
+ {
+ "DOI": "10.1038/modpathol.2012.105",
+ "article-title": "Deciduoid mesothelioma: report of 21 cases with review of the literature",
+ "author": "Ordonez",
+ "doi-asserted-by": "crossref",
+ "first-page": "1481",
+ "journal-title": "Mod. Pathol.",
+ "key": "10.1111/his.12200-BIB0003|his12200-cit-0003",
+ "volume": "25",
+ "year": "2012"
+ },
+ {
+ "DOI": "10.1111/j.1525-1438.2006.00509.x",
+ "article-title": "Atypical reactive ovarian surface epithelium, a pitfall in pathologic assessment",
+ "author": "Aydin",
+ "doi-asserted-by": "crossref",
+ "first-page": "207",
+ "issue": "Suppl. 1",
+ "journal-title": "Int. J. Gynecol. Cancer",
+ "key": "10.1111/his.12200-BIB0004|his12200-cit-0004",
+ "volume": "16",
+ "year": "2006"
+ },
+ {
+ "DOI": "10.1097/PAP.0b013e3180ca7d7b",
+ "article-title": "The pathology of endometriosis: a survey of the many faces of a common disease emphasizing diagnostic pitfalls and unusual and newly appreciated aspects",
+ "author": "Clement",
+ "doi-asserted-by": "crossref",
+ "first-page": "241",
+ "journal-title": "Adv. Anat. Pathol.",
+ "key": "10.1111/his.12200-BIB0005|his12200-cit-0005",
+ "volume": "14",
+ "year": "2007"
+ },
+ {
+ "article-title": "Extramedullary hematopoiesis associated with organizing peritoneal hemorrhage: a report of 5 cases in patients presenting with primary gynecological disorders",
+ "author": "Mesbah Ardakani",
+ "journal-title": "Int. J. Gynecol. Pathol.",
+ "key": "10.1111/his.12200-BIB0006|his12200-cit-0006"
+ },
+ {
+ "key": "10.1016/B0-12-227090-8/00204-9_bib5",
+ "series-title": "Advances in Laser Remote Sensing – Selected Papers Presented at the 20th International Laser Radar Conference",
+ "year": "2001"
+ },
+ {
+ "key": "CIT0041",
+ "unstructured": "Linda Weiss,Creating Capitalism. Oxford: Blackwell, 1988. 272 pp. £29.95. ISBN 0 631 15733 6."
+ },
+ {
+ "author": "L Piegl",
+ "edition": "2",
+ "key": "576_CR3",
+ "unstructured": "Piegl L, Tiller W (1997) The NURBS Book, Monographs in Visual Communication, 2nd edn. Springer, Berlin",
+ "volume-title": "The NURBS Book, Monographs in Visual Communication",
+ "year": "1997"
+ }
+ ],
+ "reference-count": 6,
+ "references-count": 6,
+ "relation": {
+ "cites": []
+ },
+ "score": null,
+ "short-container-title": [
+ "Histopathology"
+ ],
+ "short-title": [],
+ "source": "Crossref",
+ "subject": [
+ "Pathology and Forensic Medicine",
+ "Histology",
+ "General Medicine"
+ ],
+ "subtitle": [],
+ "title": [
+ "Deciduoid mesothelial hyperplasia of the pelvic peritoneum"
+ ],
+ "type": "journal-article"
+},
+ "release_ident": "arzkbn5brjf2nitdy4fkiusc4q"
+}
+
diff --git a/tests/test_refs_transform.py b/tests/test_refs_transform.py
index 5b48396..7cd46e8 100644
--- a/tests/test_refs_transform.py
+++ b/tests/test_refs_transform.py
@@ -1,7 +1,8 @@
+import json
from fatcat_openapi_client import ReleaseEntity
from fatcat_scholar.grobid2json import teixml2json
-from fatcat_scholar.transform import refs_from_grobid
+from fatcat_scholar.transform import refs_from_grobid, refs_from_crossref
def test_transform_refs_grobid() -> None:
@@ -40,3 +41,50 @@ def test_transform_refs_grobid() -> None:
ref.biblio.unstructured
== "Tasa K, Baker R, Murray M. Using patient feedback for qua- lity improvement. Quality Management in Health Care 1996;8:206-19."
)
+
+def test_transform_refs_crossref() -> None:
+
+ with open("tests/files/example_crossref_record.json", "r") as f:
+ record = json.loads(f.read())
+
+ dummy_release = ReleaseEntity(
+ ident="releasedummy22222222222222",
+ work_id="workdummy22222222222222222",
+ release_year=1234,
+ release_stage="accepted",
+ ext_ids={},
+ )
+
+ refs = refs_from_crossref(dummy_release, record)
+
+ assert refs[0].release_ident == "releasedummy22222222222222"
+ assert refs[0].work_ident == "workdummy22222222222222222"
+ assert refs[0].release_stage == "accepted"
+ assert refs[0].release_year == 1234
+ assert refs[0].ref_source == "crossref"
+ assert refs[0].key == "BIB0001|his12200-cit-0001"
+ assert refs[0].index == 1
+ assert refs[0].locator is None
+ assert refs[0].biblio.contrib_raw_names is not None
+ assert refs[0].biblio.contrib_raw_names[0] == "Churg"
+ assert refs[0].biblio.container_name == "Arch. Pathol. Lab. Med."
+ assert refs[0].biblio.title == "The separation of benign and malignant mesothelial proliferations"
+ assert refs[0].biblio.year == 2012
+ assert refs[0].biblio.pages == "1217"
+ assert refs[0].biblio.volume == "136"
+ assert refs[0].biblio.doi == "10.5858/arpa.2012-0112-RA"
+ assert refs[0].biblio.unstructured is None
+
+ assert refs[6].biblio.title == "Advances in Laser Remote Sensing – Selected Papers Presented at the 20th International Laser Radar Conference"
+ assert refs[6].biblio.year == 2001
+
+ assert refs[7].key == "CIT0041"
+ assert refs[7].biblio.unstructured == "Linda Weiss,Creating Capitalism. Oxford: Blackwell, 1988. 272 pp. £29.95. ISBN 0 631 15733 6."
+
+
+ assert refs[8].key == "576_CR3"
+ assert refs[8].biblio.unstructured is not None
+ assert refs[8].biblio.title == "The NURBS Book, Monographs in Visual Communication"
+ assert refs[8].biblio.year == 1997
+ assert refs[8].biblio.version == "2"
+
generated by cgit v1.2.3 (git 2.39.1) at 2024-11-22 12:30:43 +0000