From a64e93349fc475d67d8a7079a610959a5afcce0f Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 2 Apr 2020 17:38:55 -0700 Subject: WIP: top-level helper script Goal is to refactor most other covid19-specific commands into this tool, with code living in the fatcat_covid19 module. --- covid19_tool.py | 55 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 55 insertions(+) create mode 100755 covid19_tool.py diff --git a/covid19_tool.py b/covid19_tool.py new file mode 100755 index 0000000..5be70b4 --- /dev/null +++ b/covid19_tool.py @@ -0,0 +1,55 @@ +#!/usr/bin/env python3 + +import sys +import argparse + +from fatcat_covid19.webface import app + + +def main(): + parser = argparse.ArgumentParser( + formatter_class=argparse.ArgumentDefaultsHelpFormatter) + parser.set_defaults( + action='none', + ) + subparsers = parser.add_subparsers() + + sub_webface = subparsers.add_parser('webface', + help="run flask web interface") + sub_webface.set_defaults( + action='webface', + ) + sub_webface.add_argument('--debug', + action='store_true', + help="enable debugging interface (note: not for everything)") + sub_webface.add_argument('--host', + default="127.0.0.1", + help="listen on this host/IP") + sub_webface.add_argument('--port', + type=int, + default=9119, + help="listen on this port") + + sub_enrich = subparsers.add_parser('enrich', + help="enrich CORD-19 dataset (JSON) with fatcat metadata (prints to stdout)") + sub_enrich.set_defaults( + action='enrich', + ) + sub_enrich.add_argument('json_file', + help="CORD-19 parsed JSON file", + type=argparse.FileType('r')) + + args = parser.parse_args() + + if args.action == 'webface': + app.run(debug=args.debug, host=args.host, port=args.port) + if args.action == 'enrich': + # TODO + pass + else: + print("tell me what to do!") + sys.exit(-1) + + +if __name__ == '__main__': + main() -- cgit v1.2.3