diff options
Diffstat (limited to 'covid19_tool.py')
-rwxr-xr-x | covid19_tool.py | 16 |
1 files changed, 14 insertions, 2 deletions
diff --git a/covid19_tool.py b/covid19_tool.py index 1cf8dce..e984c28 100755 --- a/covid19_tool.py +++ b/covid19_tool.py @@ -70,14 +70,26 @@ def main(): type=argparse.FileType('r'), default=sys.stdout) + sub_enrich_fatcat = subparsers.add_parser('enrich-fatcat', + help="lookup fatcat releases from JSON metadata") + sub_enrich_fatcat.add_argument('json_file', + help="input JSON rows file (eg, CORD-19 parsed JSON)", + type=argparse.FileType('r')) + sub_enrich_fatcat.add_argument('--json-output', + help="file to write to", + type=argparse.FileType('r'), + default=sys.stdout) + args = parser.parse_args() if args.action == 'webface': app.run(debug=args.debug, host=args.host, port=args.port) - if args.action == 'derivatives': + elif args.action == 'derivatives': enrich_derivatives_file(args.json_file, args.json_output, args.base_dir) - if args.action == 'transform-es': + elif args.action == 'transform-es': + transform_es_file(args.json_file, args.json_output) + elif args.action == 'enrich-fatcat': transform_es_file(args.json_file, args.json_output) else: print("tell me what to do!") |