diff options
Diffstat (limited to 'ncbi-dna.txi')
| -rw-r--r-- | ncbi-dna.txi | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/ncbi-dna.txi b/ncbi-dna.txi index 9a5babc..160b9ee 100644 --- a/ncbi-dna.txi +++ b/ncbi-dna.txi @@ -5,17 +5,20 @@ Reads the NCBI-format DNA sequence following the word @samp{ORIGIN} from @var{port}. @end defun + @defun ncbi:read-file file Reads the NCBI-format DNA sequence following the word @samp{ORIGIN} from @var{file}. @end defun + @defun mrna<-cdna str Replaces @samp{T} with @samp{U} in @var{str} @end defun + @defun codons<-cdna cdna Returns a list of three-letter symbol codons comprising the protein @@ -23,12 +26,14 @@ sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + @defun protein<-cdna cdna Returns a list of three-letter symbols for the protein sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + @defun p<-cdna cdna Returns a string of one-letter amino acid codes for the protein @@ -36,6 +41,7 @@ sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + These cDNA count routines provide a means to check the nucleotide sequence with the @samp{BASE COUNT} line preceding the sequence from NCBI. @@ -47,8 +53,10 @@ Returns a list of counts of @samp{a}, @samp{c}, @samp{g}, and @samp{t} occurrencing in @var{cdna}. @end defun + @defun cdna:report-base-count cdna Prints the counts of @samp{a}, @samp{c}, @samp{g}, and @samp{t} occurrencing in @var{cdna}. @end defun + |