TODAY ?= $(shell date --iso --utc) SNAPSHOTITEM ?= $(shell grep ia_item sources.toml | cut -f2 -d'"') .PHONY: help help: ## Print info about all commands @echo "Commands:" @echo @grep -E '^[a-zA-Z_-]+:.*?## .*$$' $(MAKEFILE_LIST) | awk 'BEGIN {FS = ":.*?## "}; {printf " \033[01;32m%-20s\033[0m %s\n", $$1, $$2}' .PHONY: dep dep: ## Create local virtualenv using pipenv pipenv install --dev .PHONY: lint lint: ## Run lints (eg, flake8, mypy) pipenv run flake8 *.py chocula/*.py chocula/*/*.py tests/ --exit-zero pipenv run mypy *.py chocula/*.py chocula/*/*.py --ignore-missing-imports .PHONY: fmt fmt: ## Run code formating on all source code pipenv run black *.py chocula/ tests/ .PHONY: test test: lint ## Run all tests and lints pipenv run pytest .PHONY: coverage coverage: ## Run all tests with coverage pipenv run pytest --cov data/container_stats.json: mkdir -p data cat data/container_export.json | jq .issnl -r | sort -u > /tmp/container_issnl.tsv cat /tmp/container_issnl.tsv | parallel -j10 curl -s 'https://fatcat.wiki/container/issnl/{}/stats.json' | jq -c . > /tmp/container_stats.json mv /tmp/container_stats.json data .PHONY: container-stats container-stats: data/container_stats.json wc -l data/container_stats.json @echo @echo Done data/homepage_status.json: pipenv run ./chocula.py export_urls | shuf > /tmp/chocula_urls_to_crawl.tsv pipenv run parallel -j10 --bar --pipepart -a /tmp/chocula_urls_to_crawl.shuf.tsv ./check_issn_urls.py > /tmp/homepage_status.json cp /tmp/homepage_status.json data/ .PHONY: homepage-status homepage-status: data/homepage_status.json wc -l data/homepage-status.json @echo @echo Done .PHONY: fetch-sources fetch-sources: ## Download existing snapshot versions of all sources from archive.org mkdir -p data ia download --checksum --no-directories $(SNAPSHOTITEM) --destdir data/ rm data/$(SNAPSHOTITEM)_* data/$(TODAY)/kbart_JSTOR.txt: mkdir -p data/$(TODAY) wget -c "https://www.jstor.org/kbart/collections/all-archive-titles?contentType=journals" -O $@.wip mv $@.wip $@ data/$(TODAY)/kbart_CLOCKSS.txt: wget -c "https://reports.clockss.org/kbart/kbart_CLOCKSS.txt" -O $@.wip mv $@.wip $@ data/$(TODAY)/kbart_CLOCKSS-triggered.txt: wget -c "https://reports.clockss.org/kbart/kbart_CLOCKSS-triggered.txt" -O $@.wip mv $@.wip $@ data/$(TODAY)/kbart_LOCKSS.txt: wget -c "https://reports.lockss.org/kbart/kbart_LOCKSS.txt" -O $@.wip mv $@.wip $@ data/$(TODAY)/kbart_Portico.txt: wget -c "http://api.portico.org/kbart/Portico_Holding_KBart.txt" -O $@.wip mv $@.wip $@ data/$(TODAY)/ISSN-to-ISSN-L.txt: wget -c "https://www.issn.org/wp-content/uploads/2014/03/issnltables.zip" -O /tmp/issnltables.$(TODAY).zip unzip -p /tmp/issnltables.$(TODAY).zip "*.ISSN-to-ISSN-L.txt" > $@.wip mv $@.wip $@ data/$(TODAY)/entrez.csv: wget -c "ftp://ftp.ncbi.nlm.nih.gov/pubmed/J_Entrez.txt" -O $@.wip mv $@.wip $@ data/$(TODAY)/doaj.csv: wget -c "https://doaj.org/csv" -O $@.wip mv $@.wip $@ data/$(TODAY)/crossref_titles.csv: wget -c "https://wwwold.crossref.org/titlelist/titleFile.csv" -O $@.wip mv $@.wip $@ .PHONY: update-sources update-sources: data/$(TODAY)/kbart_JSTOR.txt data/$(TODAY)/kbart_CLOCKSS.txt data/$(TODAY)/kbart_CLOCKSS-triggered.txt data/$(TODAY)/kbart_LOCKSS.txt data/$(TODAY)/kbart_Portico.txt data/$(TODAY)/ISSN-to-ISSN-L.txt data/$(TODAY)/entrez.csv data/$(TODAY)/doaj.csv data/$(TODAY)/crossref_titles.csv ## Download new versions of updatable sources @echo @echo "Successfully updated for date (UTC): $(TODAY)" data/$(TODAY)/homepage_status.json: pipenv run python -m chocula export_urls | shuf | pv -l > /tmp/chocula_urls.tsv pipenv run parallel -j10 --bar --pipepart -a /tmp/chocula_urls.tsv ./check_issn_urls.py > /tmp/homepage_status.json mv /tmp/url_status.json $@ data/$(TODAY)/container_stats.json: data/container_export.json cat data/container_export.json | jq .issnl -r | sort -u > /tmp/container_issnl.tsv cat /tmp/container_issnl.tsv | parallel -j10 curl -s 'https://fatcat.wiki/container/issnl/{}/stats.json' | jq -c . > /tmp/container_stats.json cp /tmp/container_stats.json $@ .PHONY: upload-sources upload-sources: update-sources ## Upload most recent update-able sources to a new IA item ia upload --checksum -m collection:ia_biblio_metadata chocula-sources-snapshot-$(TODAY) data/*.tsv data/*.json data/*.txt data/*.csv .PHONY: upload-database upload-database: ## Upload an sqlite snapshot to archive.org ia upload --checksum --no-derive -m collection:ia_biblio_metadata chocula-database-snapshot-$(TODAY) chocula.sqlite sources.toml README.md extra/count_chocula.jpg .PHONY: database database: ## Build database from sources @if [ ! -f data/ISSN-to-ISSN-L.txt ]; then echo "You must run 'make fetch-sources' first"; exit -1; fi pipenv run python -m chocula everything