From ce25d59845083ca0beab98144b0c43bfc4254d6d Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Wed, 8 Sep 2021 12:16:44 -0700 Subject: daily OA crawl improvements/notes --- notes/ingest/2021-09-03_daily_improvements.md | 1021 +++++++++++++++++++++++++ 1 file changed, 1021 insertions(+) create mode 100644 notes/ingest/2021-09-03_daily_improvements.md (limited to 'notes') diff --git a/notes/ingest/2021-09-03_daily_improvements.md b/notes/ingest/2021-09-03_daily_improvements.md new file mode 100644 index 0000000..a0bb0c5 --- /dev/null +++ b/notes/ingest/2021-09-03_daily_improvements.md @@ -0,0 +1,1021 @@ + +Periodic check-in of daily crawling/ingest. + +Overall ingest status, past 30 days: + + SELECT ingest_file_result.ingest_type, ingest_file_result.status, COUNT(*) + FROM ingest_file_result + LEFT JOIN ingest_request + ON ingest_file_result.ingest_type = ingest_request.ingest_type + AND ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.created >= NOW() - '30 day'::INTERVAL + AND ingest_request.ingest_type = 'pdf' + AND ingest_request.ingest_request_source = 'fatcat-changelog' + GROUP BY ingest_file_result.ingest_type, ingest_file_result.status + ORDER BY COUNT DESC + LIMIT 20; + + ingest_type | status | count + -------------+-------------------------+-------- + pdf | no-pdf-link | 158474 + pdf | spn2-cdx-lookup-failure | 135344 + pdf | success | 127938 + pdf | spn2-error | 65411 + pdf | gateway-timeout | 63112 + pdf | blocked-cookie | 26338 + pdf | terminal-bad-status | 24853 + pdf | link-loop | 15699 + pdf | spn2-error:job-failed | 13862 + pdf | redirect-loop | 11432 + pdf | cdx-error | 2376 + pdf | too-many-redirects | 2186 + pdf | wrong-mimetype | 2142 + pdf | forbidden | 1758 + pdf | spn2-error:no-status | 972 + pdf | not-found | 820 + pdf | bad-redirect | 536 + pdf | read-timeout | 392 + pdf | wayback-error | 251 + pdf | remote-server-error | 220 + (20 rows) + +Hrm, that is a healthy fraction of `no-pdf-link`. + +Broken domains, past 30 days: + + SELECT domain, status, COUNT((domain, status)) + FROM ( + SELECT + ingest_file_result.ingest_type, + ingest_file_result.status, + substring(ingest_file_result.terminal_url FROM '[^/]+://([^/]*)') AS domain + FROM ingest_file_result + LEFT JOIN ingest_request + ON ingest_file_result.ingest_type = ingest_request.ingest_type + AND ingest_file_result.base_url = ingest_request.base_url + WHERE + -- ingest_request.created >= NOW() - '3 day'::INTERVAL + ingest_file_result.updated >= NOW() - '30 day'::INTERVAL + AND ingest_request.ingest_type = 'pdf' + AND ingest_request.ingest_request_source = 'fatcat-changelog' + ) t1 + WHERE t1.domain != '' + AND t1.status != 'success' + GROUP BY domain, status + ORDER BY COUNT DESC + LIMIT 25; + + domain | status | count + -------------------------+-------------------------+------- + zenodo.org | no-pdf-link | 39678 + osf.io | gateway-timeout | 29809 + acervus.unicamp.br | no-pdf-link | 21978 + osf.io | terminal-bad-status | 18727 + zenodo.org | spn2-cdx-lookup-failure | 17008 + doi.org | spn2-cdx-lookup-failure | 15503 + www.degruyter.com | no-pdf-link | 15122 + ieeexplore.ieee.org | spn2-error:job-failed | 12921 + osf.io | spn2-cdx-lookup-failure | 11123 + www.tandfonline.com | blocked-cookie | 8096 + www.morressier.com | no-pdf-link | 4655 + ieeexplore.ieee.org | spn2-cdx-lookup-failure | 4580 + pubs.acs.org | blocked-cookie | 4415 + www.frontiersin.org | no-pdf-link | 4163 + www.degruyter.com | spn2-cdx-lookup-failure | 3788 + www.taylorfrancis.com | no-pdf-link | 3568 + www.sciencedirect.com | no-pdf-link | 3128 + www.taylorfrancis.com | spn2-cdx-lookup-failure | 3116 + acervus.unicamp.br | spn2-cdx-lookup-failure | 2797 + www.mdpi.com | spn2-cdx-lookup-failure | 2719 + brill.com | link-loop | 2681 + linkinghub.elsevier.com | spn2-cdx-lookup-failure | 2657 + www.sciencedirect.com | spn2-cdx-lookup-failure | 2546 + apps.crossref.org | no-pdf-link | 2537 + onlinelibrary.wiley.com | blocked-cookie | 2528 + (25 rows) + +Summary of significant domains and status, past 30 days, minus spn2-cdx-lookup-failure: + + SELECT domain, status, count + FROM ( + SELECT domain, status, COUNT((domain, status)) as count + FROM ( + SELECT + ingest_file_result.ingest_type, + ingest_file_result.status, + substring(ingest_file_result.terminal_url FROM '[^/]+://([^/]*)') AS domain + FROM ingest_file_result + LEFT JOIN ingest_request + ON ingest_file_result.ingest_type = ingest_request.ingest_type + AND ingest_file_result.base_url = ingest_request.base_url + WHERE + ingest_file_result.updated >= NOW() - '30 day'::INTERVAL + AND ingest_request.ingest_type = 'pdf' + AND ingest_request.ingest_request_source = 'fatcat-changelog' + AND ingest_file_result.status != 'spn2-cdx-lookup-failure' + ) t1 + WHERE t1.domain != '' + GROUP BY CUBE (domain, status) + ) t2 + WHERE count > 200 + ORDER BY domain ASC , count DESC; + + + domain | status | count + -----------------------------------------------------------------+-----------------------+-------- + academic.oup.com | | 2405 + academic.oup.com | no-pdf-link | 1240 + academic.oup.com | link-loop | 1010 + acervus.unicamp.br | | 21980 + acervus.unicamp.br | no-pdf-link | 21978 ** + aclanthology.org | | 208 + acp.copernicus.org | | 365 + acp.copernicus.org | success | 356 + aip.scitation.org | | 1071 + aip.scitation.org | blocked-cookie | 843 + aip.scitation.org | redirect-loop | 227 + apps.crossref.org | | 2537 + apps.crossref.org | no-pdf-link | 2537 + arxiv.org | | 17817 + arxiv.org | success | 17370 + arxiv.org | terminal-bad-status | 320 + asmedigitalcollection.asme.org | | 401 + asmedigitalcollection.asme.org | link-loop | 364 + assets.researchsquare.com | | 3706 + assets.researchsquare.com | success | 3706 + avmj.journals.ekb.eg | | 605 + avmj.journals.ekb.eg | success | 595 + bfa.journals.ekb.eg | | 224 + bfa.journals.ekb.eg | success | 214 + biorxiv.org | redirect-loop | 895 + biorxiv.org | | 895 + birdsoftheworld.org | | 286 + birdsoftheworld.org | no-pdf-link | 285 + bmjopen.bmj.com | success | 232 + bmjopen.bmj.com | | 232 + books.openedition.org | | 396 + books.openedition.org | no-pdf-link | 396 + brill.com | | 4272 + brill.com | link-loop | 2681 + brill.com | no-pdf-link | 1410 + cas.columbia.edu | | 1038 + cas.columbia.edu | no-pdf-link | 1038 ** + cdr.lib.unc.edu | | 513 + cdr.lib.unc.edu | success | 469 + chemrxiv.org | | 278 + chemrxiv.org | success | 275 + classiques-garnier.com | | 531 + classiques-garnier.com | no-pdf-link | 487 * + content.iospress.com | | 275 + content.iospress.com | link-loop | 230 + cris.maastrichtuniversity.nl | | 318 + cris.maastrichtuniversity.nl | success | 284 + cyberleninka.ru | | 1165 + cyberleninka.ru | success | 1134 + deepblue.lib.umich.edu | | 289 + dergipark.org.tr | | 1185 + dergipark.org.tr | success | 774 + dergipark.org.tr | no-pdf-link | 320 + didaktorika.gr | | 688 + didaktorika.gr | redirect-loop | 688 + digi.ub.uni-heidelberg.de | | 292 + digi.ub.uni-heidelberg.de | no-pdf-link | 292 + direct.mit.edu | | 236 + direct.mit.edu | no-pdf-link | 207 * + dl.acm.org | | 2319 + dl.acm.org | blocked-cookie | 2230 + dmtcs.episciences.org | | 733 + dmtcs.episciences.org | success | 730 + doi.ala.org.au | no-pdf-link | 2373 ** + doi.ala.org.au | | 2373 + doi.org | | 732 + doi.org | terminal-bad-status | 673 + downloads.hindawi.com | success | 1452 + downloads.hindawi.com | | 1452 + drive.google.com | | 216 + drive.google.com | no-pdf-link | 211 + dtb.bmj.com | | 674 + dtb.bmj.com | link-loop | 669 + easy.dans.knaw.nl | no-pdf-link | 261 * + easy.dans.knaw.nl | | 261 + ebooks.marilia.unesp.br | | 688 + ebooks.marilia.unesp.br | no-pdf-link | 688 * + ehp.niehs.nih.gov | | 766 + ehp.niehs.nih.gov | blocked-cookie | 765 + ejournal.mandalanursa.org | | 307 + ejournal.mandalanursa.org | success | 305 + elib.spbstu.ru | | 264 + elib.spbstu.ru | redirect-loop | 257 + elibrary.ru | | 1367 + elibrary.ru | redirect-loop | 1169 + elibrary.vdi-verlag.de | | 1251 + elibrary.vdi-verlag.de | no-pdf-link | 646 + elibrary.vdi-verlag.de | link-loop | 537 + elifesciences.org | | 328 + elifesciences.org | success | 323 + figshare.com | | 803 + figshare.com | no-pdf-link | 714 * + files.osf.io | | 745 + files.osf.io | success | 614 + hammer.purdue.edu | | 244 + hammer.purdue.edu | no-pdf-link | 243 + heiup.uni-heidelberg.de | | 277 + heiup.uni-heidelberg.de | no-pdf-link | 268 + hkvalidate.perfdrive.com | no-pdf-link | 370 * + hkvalidate.perfdrive.com | | 370 + ieeexplore.ieee.org | | 16675 + ieeexplore.ieee.org | spn2-error:job-failed | 12927 + ieeexplore.ieee.org | success | 1952 + ieeexplore.ieee.org | too-many-redirects | 1193 + ieeexplore.ieee.org | no-pdf-link | 419 + jamanetwork.com | | 339 + jamanetwork.com | success | 216 + jmstt.ntou.edu.tw | | 244 + jmstt.ntou.edu.tw | success | 241 + journal.ipb.ac.id | | 229 + journal.ipb.ac.id | success | 206 + journal.nafe.org | | 221 + journals.aps.org | | 614 + journals.aps.org | gateway-timeout | 495 + journals.asm.org | | 463 + journals.asm.org | blocked-cookie | 435 + journals.flvc.org | | 230 + journals.lww.com | | 1300 + journals.lww.com | link-loop | 1284 + journals.openedition.org | | 543 + journals.openedition.org | success | 311 + journals.ub.uni-heidelberg.de | | 357 + journals.ub.uni-heidelberg.de | success | 311 + jov.arvojournals.org | | 431 + jov.arvojournals.org | no-pdf-link | 422 * + kiss.kstudy.com | | 303 + kiss.kstudy.com | no-pdf-link | 303 * + library.iated.org | | 364 + library.iated.org | redirect-loop | 264 + library.seg.org | blocked-cookie | 301 + library.seg.org | | 301 + link.aps.org | redirect-loop | 442 + link.aps.org | | 442 + linkinghub.elsevier.com | | 515 + linkinghub.elsevier.com | gateway-timeout | 392 + mc.sbm.org.br | | 224 + mc.sbm.org.br | success | 224 + mdpi-res.com | | 742 + mdpi-res.com | success | 742 + mdsoar.org | | 220 + mediarep.org | | 269 + mediarep.org | success | 264 + medrxiv.org | redirect-loop | 290 + medrxiv.org | | 290 + muse.jhu.edu | | 429 + muse.jhu.edu | terminal-bad-status | 391 + mvmj.journals.ekb.eg | | 306 + oapub.org | | 292 + oapub.org | success | 289 + onepetro.org | | 426 + onepetro.org | link-loop | 406 + onlinelibrary.wiley.com | | 2835 + onlinelibrary.wiley.com | blocked-cookie | 2531 + onlinelibrary.wiley.com | redirect-loop | 264 + open.library.ubc.ca | | 569 + open.library.ubc.ca | no-pdf-link | 425 * + opendata.uni-halle.de | | 407 + opendata.uni-halle.de | success | 263 + osf.io | | 49022 + osf.io | gateway-timeout | 29810 + osf.io | terminal-bad-status | 18731 + osf.io | spn2-error | 247 + osf.io | not-found | 205 + oxford.universitypressscholarship.com | | 392 + oxford.universitypressscholarship.com | link-loop | 233 + panor.ru | no-pdf-link | 433 * + panor.ru | | 433 + papers.ssrn.com | | 1630 + papers.ssrn.com | link-loop | 1598 + pdf.sciencedirectassets.com | | 3063 + pdf.sciencedirectassets.com | success | 3063 + peerj.com | | 464 + peerj.com | no-pdf-link | 303 * + periodicos.ufpe.br | | 245 + periodicos.ufpe.br | success | 232 + periodicos.unb.br | | 230 + periodicos.unb.br | success | 221 + preprints.jmir.org | | 548 + preprints.jmir.org | cdx-error | 499 + publications.rwth-aachen.de | | 213 + publikationen.bibliothek.kit.edu | | 346 + publikationen.bibliothek.kit.edu | success | 314 + publikationen.uni-tuebingen.de | | 623 + publikationen.uni-tuebingen.de | no-pdf-link | 522 * + publons.com | no-pdf-link | 934 * + publons.com | | 934 + pubs.acs.org | | 4507 + pubs.acs.org | blocked-cookie | 4406 + pubs.rsc.org | | 1638 + pubs.rsc.org | link-loop | 1054 + pubs.rsc.org | redirect-loop | 343 + pubs.rsc.org | success | 201 + repositorio.ufu.br | | 637 + repositorio.ufu.br | success | 607 + repository.dri.ie | | 1852 + repository.dri.ie | no-pdf-link | 1852 ** + repository.library.brown.edu | | 293 + repository.library.brown.edu | no-pdf-link | 291 * + res.mdpi.com | | 10367 + res.mdpi.com | success | 10360 + retrovirology.biomedcentral.com | | 230 + revistas.ufrj.br | | 284 + revistas.ufrj.br | success | 283 + revistas.uptc.edu.co | | 385 + revistas.uptc.edu.co | success | 344 + royalsocietypublishing.org | | 231 + rsdjournal.org | | 347 + rsdjournal.org | success | 343 + s3-ap-southeast-2.amazonaws.com | | 400 + s3-ap-southeast-2.amazonaws.com | success | 392 + s3-eu-west-1.amazonaws.com | | 2096 + s3-eu-west-1.amazonaws.com | success | 2091 + s3-euw1-ap-pe-df-pch-content-store-p.s3.eu-west-1.amazonaws.com | | 289 + s3-euw1-ap-pe-df-pch-content-store-p.s3.eu-west-1.amazonaws.com | success | 286 + s3.ca-central-1.amazonaws.com | | 202 + sage.figshare.com | | 242 + sage.figshare.com | no-pdf-link | 241 + sajeb.org | | 246 + sajeb.org | no-pdf-link | 243 + scholar.dkyobobook.co.kr | | 332 + scholar.dkyobobook.co.kr | no-pdf-link | 328 * + search.mandumah.com | | 735 + search.mandumah.com | redirect-loop | 726 + secure.jbs.elsevierhealth.com | | 1112 + secure.jbs.elsevierhealth.com | blocked-cookie | 1108 + stm.bookpi.org | no-pdf-link | 468 * + stm.bookpi.org | | 468 + storage.googleapis.com | | 1012 + storage.googleapis.com | success | 1012 + tandf.figshare.com | | 469 + tandf.figshare.com | no-pdf-link | 466 + teses.usp.br | | 739 + teses.usp.br | success | 730 + tidsskrift.dk | | 360 + tidsskrift.dk | success | 346 + tiedejaedistys.journal.fi | | 224 + tind-customer-agecon.s3.amazonaws.com | success | 332 + tind-customer-agecon.s3.amazonaws.com | | 332 + valep.vc.univie.ac.at | no-pdf-link | 280 + valep.vc.univie.ac.at | | 280 + watermark.silverchair.com | | 1729 + watermark.silverchair.com | success | 1719 + www.academia.edu | | 387 + www.academia.edu | no-pdf-link | 386 + www.ahajournals.org | | 430 + www.ahajournals.org | blocked-cookie | 413 + www.atenaeditora.com.br | | 572 + www.atenaeditora.com.br | terminal-bad-status | 513 + www.atlantis-press.com | success | 722 + www.atlantis-press.com | | 722 + www.aup-online.com | | 419 + www.aup-online.com | no-pdf-link | 419 * + www.beck-elibrary.de | | 269 + www.beck-elibrary.de | no-pdf-link | 268 * + www.biodiversitylibrary.org | no-pdf-link | 528 * + www.biodiversitylibrary.org | | 528 + www.bloomsburycollections.com | | 623 + www.bloomsburycollections.com | no-pdf-link | 605 * + www.cabi.org | | 2191 + www.cabi.org | no-pdf-link | 2186 * + www.cairn.info | | 1283 + www.cairn.info | no-pdf-link | 713 + www.cairn.info | link-loop | 345 + www.cambridge.org | | 4128 + www.cambridge.org | no-pdf-link | 1531 + www.cambridge.org | success | 1441 + www.cambridge.org | link-loop | 971 + www.cureus.com | no-pdf-link | 526 * + www.cureus.com | | 526 + www.dbpia.co.kr | | 637 + www.dbpia.co.kr | redirect-loop | 631 + www.deboni.he.com.br | | 382 + www.deboni.he.com.br | success | 381 + www.degruyter.com | | 17783 + www.degruyter.com | no-pdf-link | 15102 + www.degruyter.com | success | 2584 + www.dovepress.com | | 480 + www.dovepress.com | success | 472 + www.e-manuscripta.ch | | 1350 + www.e-manuscripta.ch | no-pdf-link | 1350 * + www.e-periodica.ch | | 1276 + www.e-periodica.ch | no-pdf-link | 1275 + www.e-rara.ch | | 202 + www.e-rara.ch | no-pdf-link | 202 + www.elgaronline.com | | 495 + www.elgaronline.com | link-loop | 290 + www.elibrary.ru | | 922 + www.elibrary.ru | no-pdf-link | 904 + www.emerald.com | | 2155 + www.emerald.com | no-pdf-link | 1936 * + www.emerald.com | success | 219 + www.eurekaselect.com | | 518 + www.eurekaselect.com | no-pdf-link | 516 * + www.frontiersin.org | | 4163 + www.frontiersin.org | no-pdf-link | 4162 ** + www.hanser-elibrary.com | | 444 + www.hanser-elibrary.com | blocked-cookie | 444 + www.hanspub.org | | 334 + www.hanspub.org | no-pdf-link | 314 + www.idunn.no | | 1736 + www.idunn.no | link-loop | 596 + www.idunn.no | success | 577 + www.idunn.no | no-pdf-link | 539 + www.igi-global.com | terminal-bad-status | 458 + www.igi-global.com | | 458 + www.ijcai.org | | 533 + www.ijcai.org | success | 532 + www.ijraset.com | success | 385 + www.ijraset.com | | 385 + www.inderscience.com | | 712 + www.inderscience.com | no-pdf-link | 605 * + www.ingentaconnect.com | | 456 + www.ingentaconnect.com | no-pdf-link | 413 * + www.internationaljournalssrg.org | | 305 + www.internationaljournalssrg.org | no-pdf-link | 305 * + www.isca-speech.org | | 2392 + www.isca-speech.org | no-pdf-link | 2391 ** + www.journals.uchicago.edu | | 228 + www.journals.uchicago.edu | blocked-cookie | 227 + www.jstage.jst.go.jp | | 1492 + www.jstage.jst.go.jp | success | 1185 + www.jstage.jst.go.jp | no-pdf-link | 289 + www.jstor.org | | 301 + www.jurology.com | | 887 + www.jurology.com | redirect-loop | 887 + www.karger.com | | 318 + www.liebertpub.com | | 507 + www.liebertpub.com | blocked-cookie | 496 + www.morressier.com | | 4781 + www.morressier.com | no-pdf-link | 4655 ** + www.ncl.ecu.edu | | 413 + www.ncl.ecu.edu | success | 413 + www.nomos-elibrary.de | | 526 + www.nomos-elibrary.de | no-pdf-link | 391 + www.oecd-ilibrary.org | no-pdf-link | 1170 ** + www.oecd-ilibrary.org | | 1170 + www.openagrar.de | no-pdf-link | 221 + www.openagrar.de | | 221 + www.osapublishing.org | | 900 + www.osapublishing.org | link-loop | 615 + www.osapublishing.org | no-pdf-link | 269 + www.osti.gov | | 630 + www.osti.gov | link-loop | 573 + www.oxfordlawtrove.com | no-pdf-link | 476 * + www.oxfordlawtrove.com | | 476 + www.pdcnet.org | | 298 + www.pdcnet.org | terminal-bad-status | 262 + www.pedocs.de | | 203 + www.pnas.org | | 222 + www.preprints.org | | 372 + www.preprints.org | success | 366 + www.repository.cam.ac.uk | | 801 + www.repository.cam.ac.uk | success | 359 + www.repository.cam.ac.uk | no-pdf-link | 239 + www.research-collection.ethz.ch | | 276 + www.research-collection.ethz.ch | terminal-bad-status | 274 + www.revistas.usp.br | | 207 + www.revistas.usp.br | success | 204 + www.rina.org.uk | no-pdf-link | 1009 ** + www.rina.org.uk | | 1009 + www.schweizerbart.de | no-pdf-link | 202 + www.schweizerbart.de | | 202 + www.scielo.br | | 544 + www.scielo.br | redirect-loop | 526 + www.sciencedirect.com | | 3901 + www.sciencedirect.com | no-pdf-link | 3127 ** + www.sciencedirect.com | link-loop | 701 + www.sciendo.com | | 384 + www.sciendo.com | success | 363 + www.sciengine.com | | 225 + www.scirp.org | | 209 + www.spandidos-publications.com | | 205 + www.tandfonline.com | | 8925 + www.tandfonline.com | blocked-cookie | 8099 + www.tandfonline.com | terminal-bad-status | 477 + www.tandfonline.com | redirect-loop | 322 + www.taylorfrancis.com | | 6119 + www.taylorfrancis.com | no-pdf-link | 3567 + www.taylorfrancis.com | link-loop | 2169 + www.taylorfrancis.com | terminal-bad-status | 353 + www.thieme-connect.de | | 1047 + www.thieme-connect.de | redirect-loop | 472 + www.thieme-connect.de | spn2-error:job-failed | 343 + www.tib.eu | | 206 + www.trp.org.in | | 311 + www.trp.org.in | success | 311 + www.un-ilibrary.org | no-pdf-link | 597 * + www.un-ilibrary.org | | 597 + www.vr-elibrary.de | | 775 + www.vr-elibrary.de | blocked-cookie | 774 + www.wjgnet.com | | 204 + www.wjgnet.com | no-pdf-link | 204 + www.worldscientific.com | | 974 + www.worldscientific.com | blocked-cookie | 971 + www.worldwidejournals.com | | 242 + www.worldwidejournals.com | no-pdf-link | 203 + www.wto-ilibrary.org | no-pdf-link | 295 + www.wto-ilibrary.org | | 295 + www.zora.uzh.ch | | 222 + zenodo.org | | 49460 + zenodo.org | no-pdf-link | 39721 + zenodo.org | success | 8954 + zenodo.org | wrong-mimetype | 562 + | | 445919 + | no-pdf-link | 168035 + | success | 140875 + | gateway-timeout | 31809 + | blocked-cookie | 26431 + | terminal-bad-status | 25625 + | link-loop | 19006 + | spn2-error:job-failed | 13962 + | redirect-loop | 12512 + | wrong-mimetype | 2302 + | spn2-error | 1689 + | too-many-redirects | 1203 + | bad-redirect | 732 + | cdx-error | 539 + | not-found | 420 + | spn2-error:no-status | 256 + (419 rows) + +Get random subsets by terminal domain: + + \x auto + SELECT + ingest_request.link_source_id AS link_source_id, + ingest_request.base_url as base_url , + ingest_file_result.terminal_url as terminal_url + FROM ingest_request + LEFT JOIN ingest_file_result + ON ingest_file_result.ingest_type = ingest_request.ingest_type + AND ingest_file_result.base_url = ingest_request.base_url + WHERE + ingest_request.created >= NOW() - '30 day'::INTERVAL + AND ingest_request.ingest_type = 'pdf' + AND ingest_request.ingest_request_source = 'fatcat-changelog' + AND ingest_file_result.status = 'no-pdf-link' + AND ingest_file_result.terminal_url LIKE '%//DOMAIN/%' + ORDER BY random() + LIMIT 5; + +## acervus.unicamp.br + +Previously flagged as messy (2021-05_daily_improvements.md) + +## cas.columbia.edu + +-[ RECORD 1 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.7916/d8-2ety-qm51 +base_url | https://doi.org/10.7916/d8-2ety-qm51 +terminal_url | https://cas.columbia.edu/cas/login?TARGET=https%3A%2F%2Fdlc.library.columbia.edu%2Fusers%2Fauth%2Fsaml%2Fcallback +-[ RECORD 2 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.7916/d8-0zf6-d167 +base_url | https://doi.org/10.7916/d8-0zf6-d167 +terminal_url | https://cas.columbia.edu/cas/login?TARGET=https%3A%2F%2Fdlc.library.columbia.edu%2Fusers%2Fauth%2Fsaml%2Fcallback +-[ RECORD 3 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.7916/d8-k6ha-sn43 +base_url | https://doi.org/10.7916/d8-k6ha-sn43 +terminal_url | https://cas.columbia.edu/cas/login?TARGET=https%3A%2F%2Fdlc.library.columbia.edu%2Fusers%2Fauth%2Fsaml%2Fcallback +-[ RECORD 4 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.7916/d8-bj6t-eb07 +base_url | https://doi.org/10.7916/d8-bj6t-eb07 +terminal_url | https://cas.columbia.edu/cas/login?TARGET=https%3A%2F%2Fdlc.library.columbia.edu%2Fusers%2Fauth%2Fsaml%2Fcallback +-[ RECORD 5 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.7916/d8-xjac-j502 +base_url | https://doi.org/10.7916/d8-xjac-j502 +terminal_url | https://cas.columbia.edu/cas/login?TARGET=https%3A%2F%2Fdlc.library.columbia.edu%2Fusers%2Fauth%2Fsaml%2Fcallback + +these are not public (loginwalls) + +DONE: '/login?TARGET=' as a login wall pattern + +## doi.ala.org.au + +Previously flagged as dataset repository; datacite metadata is wrong. (2021-05_daily_improvements.md) + +NOTE: look at ingesting datasets + +## www.isca-speech.org + +-[ RECORD 1 ]--+---------------------------------------------------------------------------------- +link_source_id | 10.21437/interspeech.2014-84 +base_url | https://doi.org/10.21437/interspeech.2014-84 +terminal_url | https://www.isca-speech.org/archive/interspeech_2014/li14b_interspeech.html +-[ RECORD 2 ]--+---------------------------------------------------------------------------------- +link_source_id | 10.21437/interspeech.2004-319 +base_url | https://doi.org/10.21437/interspeech.2004-319 +terminal_url | https://www.isca-speech.org/archive/interspeech_2004/delcroix04_interspeech.html +-[ RECORD 3 ]--+---------------------------------------------------------------------------------- +link_source_id | 10.21437/interspeech.2006-372 +base_url | https://doi.org/10.21437/interspeech.2006-372 +terminal_url | https://www.isca-speech.org/archive/interspeech_2006/lei06c_interspeech.html +-[ RECORD 4 ]--+---------------------------------------------------------------------------------- +link_source_id | 10.21437/interspeech.2015-588 +base_url | https://doi.org/10.21437/interspeech.2015-588 +terminal_url | https://www.isca-speech.org/archive/interspeech_2015/polzehl15b_interspeech.html +-[ RECORD 5 ]--+---------------------------------------------------------------------------------- +link_source_id | 10.21437/interspeech.2006-468 +base_url | https://doi.org/10.21437/interspeech.2006-468 +terminal_url | https://www.isca-speech.org/archive/interspeech_2006/chitturi06b_interspeech.html + +Bespoke site. Added rule to sandcrawler. + +NOTE: re-ingest/recrawl all isca-speech.org no-pdf-link terminal URLs (fatcat-ingest?) + +## www.morressier.com + + +-[ RECORD 1 ]--+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.1115/1.0002858v +base_url | https://doi.org/10.1115/1.0002858v +terminal_url | https://www.morressier.com/article/development-new-single-highdensity-heatflux-gauges-unsteady-heat-transfer-measurements-rotating-transonic-turbine/60f162805d86378f03b49af5 +-[ RECORD 2 ]--+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.1115/1.0003896v +base_url | https://doi.org/10.1115/1.0003896v +terminal_url | https://www.morressier.com/article/experimental-investigation-proton-exchange-membrane-fuel-cell-platinum-nafion-along-inplane-direction/60f16d555d86378f03b50038 +-[ RECORD 3 ]--+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.1115/1.0004476v +base_url | https://doi.org/10.1115/1.0004476v +terminal_url | https://www.morressier.com/article/effect-air-release-agents-performance-results-fabric-lined-bushings/60f16d585d86378f03b502d5 +-[ RECORD 4 ]--+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.1115/1.0001286v +base_url | https://doi.org/10.1115/1.0001286v +terminal_url | https://www.morressier.com/article/development-verification-modelling-practice-cfd-calculations-obtain-current-loads-fpso/60f15d3fe537565438d70ece +-[ RECORD 5 ]--+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.1115/1.0000315v +base_url | https://doi.org/10.1115/1.0000315v +terminal_url | https://www.morressier.com/article/fire-event-analysis-fire-frequency-estimation-japanese-nuclear-power-plant/60f15a6f5d86378f03b43874 + +Many of these seem to be presentations, as both video and slides. PDFs seem broken though. + +NOTE: add to list of interesting rich media to crawl/preserve (video+slides+data) + +## www.oecd-ilibrary.org + +Paywall (2021-05_daily_improvements.md) + +## www.rina.org.uk + +-[ RECORD 1 ]--+------------------------------------------------------- +link_source_id | 10.3940/rina.ws.2002.10 +base_url | https://doi.org/10.3940/rina.ws.2002.10 +terminal_url | https://www.rina.org.uk/showproducts.html?product=4116 +-[ RECORD 2 ]--+------------------------------------------------------- +link_source_id | 10.3940/rina.pass.2003.16 +base_url | https://doi.org/10.3940/rina.pass.2003.16 +terminal_url | https://www.rina.org.uk/showproducts.html?product=3566 +-[ RECORD 3 ]--+------------------------------------------------------- +link_source_id | 10.3940/rina.icsotin.2013.15 +base_url | https://doi.org/10.3940/rina.icsotin.2013.15 +terminal_url | https://www.rina.org.uk/showproducts.html?product=8017 +-[ RECORD 4 ]--+------------------------------------------------------- +link_source_id | 10.3940/rina.wfa.2010.23 +base_url | https://doi.org/10.3940/rina.wfa.2010.23 +terminal_url | https://www.rina.org.uk/showproducts.html?product=8177 +-[ RECORD 5 ]--+------------------------------------------------------- +link_source_id | 10.3940/rina.icsotin15.2015.01 +base_url | https://doi.org/10.3940/rina.icsotin15.2015.01 +terminal_url | https://www.rina.org.uk/showproducts.html?product=7883 + +Site is broken in some way + +## www.sciencedirect.com + +-[ RECORD 1 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.1016/j.jhlste.2021.100332 +base_url | https://doi.org/10.1016/j.jhlste.2021.100332 +terminal_url | https://www.sciencedirect.com/science/article/abs/pii/S1473837621000332 +-[ RECORD 2 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.1016/j.hazadv.2021.100006 +base_url | https://doi.org/10.1016/j.hazadv.2021.100006 +terminal_url | https://www.sciencedirect.com/science/article/pii/S2772416621000061/pdfft?md5=e51bfd495bb53073c7a379d25cb11a32&pid=1-s2.0-S2772416621000061-main.pdf +-[ RECORD 3 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.1016/b978-0-12-822844-9.00009-8 +base_url | https://doi.org/10.1016/b978-0-12-822844-9.00009-8 +terminal_url | https://www.sciencedirect.com/science/article/pii/B9780128228449000098 +-[ RECORD 4 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.1016/j.colcom.2021.100490 +base_url | https://doi.org/10.1016/j.colcom.2021.100490 +terminal_url | https://www.sciencedirect.com/science/article/abs/pii/S2215038221001308 +-[ RECORD 5 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.1016/b978-0-323-85245-6.00012-6 +base_url | https://doi.org/10.1016/b978-0-323-85245-6.00012-6 +terminal_url | https://www.sciencedirect.com/science/article/pii/B9780323852456000126 + +These no-pdf-url ones seem to just be not OA, which is expected for much of the +domain. + +## repository.dri.ie + + link_source_id | base_url | terminal_url +-----------------------+---------------------------------------+--------------------------------------------- + 10.7486/dri.t148v5941 | https://doi.org/10.7486/dri.t148v5941 | https://repository.dri.ie/catalog/t148v5941 + 10.7486/dri.2z119c98f | https://doi.org/10.7486/dri.2z119c98f | https://repository.dri.ie/catalog/2z119c98f + 10.7486/dri.qf8621102 | https://doi.org/10.7486/dri.qf8621102 | https://repository.dri.ie/catalog/qf8621102 + 10.7486/dri.js95m457t | https://doi.org/10.7486/dri.js95m457t | https://repository.dri.ie/catalog/js95m457t + 10.7486/dri.c534vb726 | https://doi.org/10.7486/dri.c534vb726 | https://repository.dri.ie/catalog/c534vb726 + +"Digital repository of Ireland" + +Historical scanned content. Bespoke site. Fixed. + +NOTE: recrawl/retry this domain + +## www.frontiersin.org + +-[ RECORD 1 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.3389/978-2-88971-147-5 +base_url | https://doi.org/10.3389/978-2-88971-147-5 +terminal_url | https://www.frontiersin.org/research-topics/9081/neuroimaging-approaches-to-the-study-of-tinnitus-and-hyperacusis +-[ RECORD 2 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.3389/fnins.2021.722592 +base_url | https://doi.org/10.3389/fnins.2021.722592 +terminal_url | https://www.frontiersin.org/articles/10.3389/fnins.2021.722592/full +-[ RECORD 3 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.3389/fcell.2021.683209 +base_url | https://doi.org/10.3389/fcell.2021.683209 +terminal_url | https://www.frontiersin.org/articles/10.3389/fcell.2021.683209/full +-[ RECORD 4 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.3389/fmicb.2021.692474 +base_url | https://doi.org/10.3389/fmicb.2021.692474 +terminal_url | https://www.frontiersin.org/articles/10.3389/fmicb.2021.692474/full +-[ RECORD 5 ]--+------------------------------------------------------------------------------------------------------------------ +link_source_id | 10.3389/fneur.2021.676527 +base_url | https://doi.org/10.3389/fneur.2021.676527 +terminal_url | https://www.frontiersin.org/articles/10.3389/fneur.2021.676527/full + +All the `/research-topics/` URLs are out of scope. + +NOTE: recrawl missing frontiersin.org articles for PDFs +NOTE: recrawl missing frontiersin.org articles for XML (?) + +------- + +## direct.mit.edu + +Previously "not available" (2021-05_daily_improvements.md) + +## figshare.com + +-[ RECORD 1 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.6084/m9.figshare.15052236.v6 +base_url | https://doi.org/10.6084/m9.figshare.15052236.v6 +terminal_url | https://figshare.com/articles/software/RCL-tree_rar/15052236/6 +-[ RECORD 2 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.6084/m9.figshare.14907846.v5 +base_url | https://doi.org/10.6084/m9.figshare.14907846.v5 +terminal_url | https://figshare.com/articles/book/Conservation_of_Limestone_Ecosystems_of_Malaysia_Part_I_Acknowledgements_Methodology_Overview_of_limestone_outcrops_in_Malaysia_References_Detailed_information_on_limestone_outcrops_of_the_states_Johor_Negeri_Sembilan_Terengganu_Selangor_Pe/14907846/5 +-[ RECORD 3 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.6084/m9.figshare.15157614.v1 +base_url | https://doi.org/10.6084/m9.figshare.15157614.v1 +terminal_url | https://figshare.com/articles/software/code_for_NN-A72265C/15157614/1 +-[ RECORD 4 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.6084/m9.figshare.15172926.v1 +base_url | https://doi.org/10.6084/m9.figshare.15172926.v1 +terminal_url | https://figshare.com/articles/preprint/History_of_the_internet/15172926/1 +-[ RECORD 5 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.6084/m9.figshare.16532574.v1 +base_url | https://doi.org/10.6084/m9.figshare.16532574.v1 +terminal_url | https://figshare.com/articles/media/Helen_McConnell_How_many_trees_do_you_think_you_have_planted_/16532574/1 + +NOTE: can determine from the redirect URL, I guess. This is helpful for ingest! +Could also potentially correct fatcat release_type using this info. + +We seem to be getting the ones we can (eg, papers) just fine + +## hkvalidate.perfdrive.com + +Should be skipping/bailing on this domain, but not for some reason. + +-[ RECORD 1 ]--+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.3847/1538-4357/ac05cc +base_url | https://doi.org/10.3847/1538-4357/ac05cc +terminal_url | https://hkvalidate.perfdrive.com/?ssa=1716a049-aeaa-4a89-8f82-bd733adaa2e7&ssb=43981203877&ssc=https%3A%2F%2Fiopscience.iop.org%2Farticle%2F10.3847%2F1538-4357%2Fac05cc&ssi=0774dd12-8427-4e27-a2ac-759c8cc2ec0e&ssk=support@shieldsquare.com&ssm=07370915269044035109047683305266&ssn=e69c743cc3d66619f960f924b562160d637e8d7f1b0f-d3bb-44d4-b075ed&sso=75a8bd85-4a097fb40f99bfb9c97b0a4ca0a38fd6d79513a466e82cc7&ssp=92054607321628531005162856888275586&ssq=33809984098158010864140981653938424553916&ssr=MjA3LjI0MS4yMjUuMTM5&sst=Mozilla/5.0%20(Windows%20NT%2010.0;%20Win64;%20x64)%20AppleWebKit/537.36%20(KHTML,%20like%20Gecko)%20Chrome/74.0.3729.169%20Safari/537.36&ssv=&ssw= +-[ RECORD 2 ]--+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.3847/1538-4357/ac0429 +base_url | https://doi.org/10.3847/1538-4357/ac0429 +terminal_url | https://hkvalidate.perfdrive.com/?ssa=12bca70d-0af4-4241-9c9b-384befd96a88&ssb=92559232428&ssc=https%3A%2F%2Fiopscience.iop.org%2Farticle%2F10.3847%2F1538-4357%2Fac0429&ssi=cff72ab0-8427-4acd-a0e7-db1b04cf7ce7&ssk=support@shieldsquare.com&ssm=27895673282814430105287068829605&ssn=9af36a8e10efd239c9367a2f31dde500f7455c4d5f45-bf11-4b99-ad29ea&sso=26bd22d2-b23e1bd9558f2fd9ed0768ef1acecb24715d1d463328a229&ssp=16502500621628222613162823304820671&ssq=11469693950387070477339503456478590533604&ssr=MjA3LjI0MS4yMjUuMTYw&sst=Mozilla/5.0%20(Windows%20NT%2010.0;%20Win64;%20x64)%20AppleWebKit/537.36%20(KHTML,%20like%20Gecko)%20Chrome/74.0.3729.169%20Safari/537.36&ssv=&ssw= +-[ RECORD 3 ]--+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.1149/1945-7111/ac1a85 +base_url | https://doi.org/10.1149/1945-7111/ac1a85 +terminal_url | https://hkvalidate.perfdrive.com/?ssa=b0fef51a-0f44-476e-b951-3341bde6aa67&ssb=84929220393&ssc=https%3A%2F%2Fiopscience.iop.org%2Farticle%2F10.1149%2F1945-7111%2Fac1a85&ssi=48c05577-8427-4421-acd3-735ca29a46e6&ssk=support@shieldsquare.com&ssm=81129482524077974103852241068134&ssn=cf6c261d2b20d518b2ebe57e40ffaec9ab4cd1955dcb-7877-4f5b-bc3b1e&sso=1d196cae-6850f1ed8143e460f2bfbb61a8ae15cfe6b53d3bcdc528ca&ssp=99289867941628195224162819241830491&ssq=16897595632212421273956322948987630170313&ssr=MjA3LjI0MS4yMjUuMjM2&sst=Mozilla/5.0%20(Windows%20NT%2010.0;%20Win64;%20x64)%20AppleWebKit/537.36%20(KHTML,%20like%20Gecko)%20Chrome/74.0.3729.169%20Safari/537.36&ssv=&ssw= +-[ RECORD 4 ]--+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.35848/1882-0786/ac1b0d +base_url | https://doi.org/10.35848/1882-0786/ac1b0d +terminal_url | https://hkvalidate.perfdrive.com/?ssa=6debdd23-c46b-4b40-b73c-d5540f04454e&ssb=95627212532&ssc=https%3A%2F%2Fiopscience.iop.org%2Farticle%2F10.35848%2F1882-0786%2Fac1b0d&ssi=78b34ff9-8427-4d07-a0db-78a3aa2c7332&ssk=support@shieldsquare.com&ssm=54055111549093989106852695053789&ssn=cb51949e15a02cb99a8d0b57c4d06327b72e8d5c87a8-d006-4ffa-939ffb&sso=1b7fd62d-8107746fe28fca252fd45ffa403937e272bf75b452b68d4a&ssp=77377533171628212164162820021422494&ssq=02679025218797637682252187852000657274192&ssr=MjA3LjI0MS4yMzMuMTIx&sst=Mozilla/5.0%20(Windows%20NT%2010.0;%20Win64;%20x64)%20AppleWebKit/537.36%20(KHTML,%20like%20Gecko)%20Chrome/74.0.3729.169%20Safari/537.36&ssv=&ssw= +-[ RECORD 5 ]--+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.3847/1538-4357/ac05ba +base_url | https://doi.org/10.3847/1538-4357/ac05ba +terminal_url | https://hkvalidate.perfdrive.com/?ssa=f127eb3d-6a05-459d-97f2-499715c04b13&ssb=06802230353&ssc=https%3A%2F%2Fiopscience.iop.org%2Farticle%2F10.3847%2F1538-4357%2Fac05ba&ssi=8d087719-8427-4046-91fb-5e96af401560&ssk=support@shieldsquare.com&ssm=21056861072205974105064006574997&ssn=d05a73cff6d9af57acd6e2c366e716176752e1164d39-b9a7-408c-837d11&sso=d3f38d1e-a562a19195042d7e471a5e4fab03b6ca16ff1711c7c61804&ssp=68781137401628744693162877909483738&ssq=79454859841502433261398415426689546750534&ssr=MjA3LjI0MS4yMzIuMTg5&sst=Mozilla/5.0%20(Windows%20NT%2010.0;%20Win64;%20x64)%20AppleWebKit/537.36%20(KHTML,%20like%20Gecko)%20Chrome/74.0.3729.169%20Safari/537.36&ssv=&ssw= + +Was failing to check against blocklist again at the end of attempts. + +Could retry all these to update status, but probably not worth it. + +## jov.arvojournals.org + + link_source_id | base_url | terminal_url +-----------------------+---------------------------------------+------------------------------------------------------------- + 10.1167/jov.21.9.1933 | https://doi.org/10.1167/jov.21.9.1933 | https://jov.arvojournals.org/article.aspx?articleid=2777021 + 10.1167/jov.21.9.2910 | https://doi.org/10.1167/jov.21.9.2910 | https://jov.arvojournals.org/article.aspx?articleid=2777561 + 10.1167/jov.21.9.1895 | https://doi.org/10.1167/jov.21.9.1895 | https://jov.arvojournals.org/article.aspx?articleid=2777057 + 10.1167/jov.21.9.2662 | https://doi.org/10.1167/jov.21.9.2662 | https://jov.arvojournals.org/article.aspx?articleid=2777793 + 10.1167/jov.21.9.2246 | https://doi.org/10.1167/jov.21.9.2246 | https://jov.arvojournals.org/article.aspx?articleid=2777441 + +These seem to just not be published/available yet. + +But they also use watermark.silverchair.com + +NOTE: re-crawl (force-retry?) all non-recent papers with fatcat-ingest +NOTE: for watermark.silverchair.com terminal bad-status, re-crawl from initial URL (base_url) using heritrix + +## kiss.kstudy.com + +Previously unable to download (2021-05_daily_improvements.md) + +## open.library.ubc.ca + + link_source_id | base_url | terminal_url +--------------------+------------------------------------+---------------------------------------------------------------------------------- + 10.14288/1.0400664 | https://doi.org/10.14288/1.0400664 | https://open.library.ubc.ca/collections/bcnewspapers/nelsondaily/items/1.0400664 + 10.14288/1.0401189 | https://doi.org/10.14288/1.0401189 | https://open.library.ubc.ca/collections/bcnewspapers/nelsondaily/items/1.0401189 + 10.14288/1.0401487 | https://doi.org/10.14288/1.0401487 | https://open.library.ubc.ca/cIRcle/collections/48630/items/1.0401487 + 10.14288/1.0400994 | https://doi.org/10.14288/1.0400994 | https://open.library.ubc.ca/collections/bcnewspapers/nelsondaily/items/1.0400994 + 10.14288/1.0401312 | https://doi.org/10.14288/1.0401312 | https://open.library.ubc.ca/collections/bcnewspapers/nelsondaily/items/1.0401312 + +Historical newspapers, out of scope? + +Video content: +https://open.library.ubc.ca/cIRcle/collections/48630/items/1.0401487 + +Another video: https://open.library.ubc.ca/cIRcle/collections/48630/items/1.0400764 + +NOTE: add video link to alternative content demo ingest: https://open.library.ubc.ca/cIRcle/collections/48630/items/1.0400764 +NOTE: handle this related withdrawn notice? https://open.library.ubc.ca/cIRcle/collections/48630/items/1.0401512 + + +## panor.ru + + link_source_id | base_url | terminal_url +-------------------------+-----------------------------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------------------- + 10.33920/med-14-2108-06 | https://doi.org/10.33920/med-14-2108-06 | https://panor.ru/articles/otsenka-dinamiki-pokazateley-morfofunktsionalnykh-kharakteristik-kozhi-upatsientov-s-spr-pod-vliyaniem-kompleksnoy-fototerapii/66351.html + 10.33920/nik-02-2105-01 | https://doi.org/10.33920/nik-02-2105-01 | https://panor.ru/articles/innovatsionnost-obrazovatelnykh-tekhnologiy-kak-istoricheski-oposredovannyy-fenomen/65995.html + 10.33920/pro-1-2101-10 | https://doi.org/10.33920/pro-1-2101-10 | https://panor.ru/articles/obespechenie-bezopasnosti-na-promyshlennykh-predpriyatiyakh-s-pomoshchyu-sredstv-individualnoy-zashchity/66299.html + 10.33920/sel-4-2008-04 | https://doi.org/10.33920/sel-4-2008-04 | https://panor.ru/articles/osobennosti-regulirovaniya-zemelnykh-otnosheniy-na-prigranichnykh-territoriyakh-rossiyskoy-federatsii/66541.html + 10.33920/pro-2-2104-03 | https://doi.org/10.33920/pro-2-2104-03 | https://panor.ru/articles/organizatsiya-samorazvivayushchegosya-proizvodstva-v-realnykh-usloviyakh/65054.html + +"The full version of the article is available only to subscribers of the journal" + +Paywall + +## peerj.com + +Previously: this is HTML of reviews (2021-05_daily_improvements.md) + +NOTE: Should be HTML ingest, possibly special case scope + +## publons.com + +Previously: this is HTML (2021-05_daily_improvements.md) + +NOTE: Should be HTML ingest, possibly special case scope (length of works) + +## stm.bookpi.org + + link_source_id | base_url | terminal_url +-----------------------------+---------------------------------------------+---------------------------------------------------- + 10.9734/bpi/nfmmr/v7/11547d | https://doi.org/10.9734/bpi/nfmmr/v7/11547d | https://stm.bookpi.org/NFMMR-V7/article/view/3231 + 10.9734/bpi/ecafs/v1/9773d | https://doi.org/10.9734/bpi/ecafs/v1/9773d | https://stm.bookpi.org/ECAFS-V1/article/view/3096 + 10.9734/bpi/mpebm/v5/3391f | https://doi.org/10.9734/bpi/mpebm/v5/3391f | https://stm.bookpi.org/MPEBM-V5/article/view/3330 + 10.9734/bpi/castr/v13/3282f | https://doi.org/10.9734/bpi/castr/v13/3282f | https://stm.bookpi.org/CASTR-V13/article/view/2810 + 10.9734/bpi/hmms/v13 | https://doi.org/10.9734/bpi/hmms/v13 | https://stm.bookpi.org/HMMS-V13/issue/view/274 + +These are... just abstracts of articles within a book? Weird. Maybe sketchy? DOIs via Crossref + +## www.cabi.org + + link_source_id | base_url | terminal_url +--------------------------+------------------------------------------+---------------------------------------------------- + 10.1079/dfb/20133414742 | https://doi.org/10.1079/dfb/20133414742 | https://www.cabi.org/cabreviews/review/20133414742 + 10.1079/dmpd/20056500471 | https://doi.org/10.1079/dmpd/20056500471 | https://www.cabi.org/cabreviews/review/20056500471 + 10.1079/dmpp/20056600544 | https://doi.org/10.1079/dmpp/20056600544 | https://www.cabi.org/cabreviews/review/20056600544 + 10.1079/dmpd/20056500117 | https://doi.org/10.1079/dmpd/20056500117 | https://www.cabi.org/cabreviews/review/20056500117 + 10.1079/dmpp20056600337 | https://doi.org/10.1079/dmpp20056600337 | https://www.cabi.org/cabreviews/review/20056600337 + +Reviews? but just abstracts? + +## www.cureus.com + +-[ RECORD 1 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.7759/cureus.17547 +base_url | https://doi.org/10.7759/cureus.17547 +terminal_url | https://www.cureus.com/articles/69542-tramadol-induced-jerks +-[ RECORD 2 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.7759/cureus.16867 +base_url | https://doi.org/10.7759/cureus.16867 +terminal_url | https://www.cureus.com/articles/66793-advanced-squamous-cell-carcinoma-of-gall-bladder-masquerading-as-liver-abscess-with-review-of-literature-review-on-advanced-biliary-tract-cancer +-[ RECORD 3 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.7759/cureus.17425 +base_url | https://doi.org/10.7759/cureus.17425 +terminal_url | https://www.cureus.com/articles/67438-attitudes-and-knowledge-of-medical-students-towards-healthcare-for-lesbian-gay-bisexual-and-transgender-seniors-impact-of-a-case-based-discussion-with-facilitators-from-the-community +-[ RECORD 4 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.7759/cureus.17313 +base_url | https://doi.org/10.7759/cureus.17313 +terminal_url | https://www.cureus.com/articles/67258-utilizing-google-trends-to-track-online-interest-in-elective-hand-surgery-during-the-covid-19-pandemic +-[ RECORD 5 ]--+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +link_source_id | 10.7759/cureus.16943 +base_url | https://doi.org/10.7759/cureus.16943 +terminal_url | https://www.cureus.com/articles/19364-small-bowel-obstruction-a-rare-presentation-of-the-inferior-pancreaticoduodenal-artery-pseudoaneurysm-bleed + +Ugh, stupid "email to get PDF". but ingest seems to work anyways? + +NOTE: re-crawl/re-ingest all (eg, fatcat-ingest or similar) + +## www.e-manuscripta.ch + + link_source_id | base_url | terminal_url +------------------------------+----------------------------------------------+------------------------------------------------------------------- + 10.7891/e-manuscripta-114031 | https://doi.org/10.7891/e-manuscripta-114031 | https://www.e-manuscripta.ch/swa/doi/10.7891/e-manuscripta-114031 + 10.7891/e-manuscripta-112064 | https://doi.org/10.7891/e-manuscripta-112064 | https://www.e-manuscripta.ch/zut/doi/10.7891/e-manuscripta-112064 + 10.7891/e-manuscripta-112176 | https://doi.org/10.7891/e-manuscripta-112176 | https://www.e-manuscripta.ch/zut/doi/10.7891/e-manuscripta-112176 + 10.7891/e-manuscripta-115200 | https://doi.org/10.7891/e-manuscripta-115200 | https://www.e-manuscripta.ch/swa/doi/10.7891/e-manuscripta-115200 + 10.7891/e-manuscripta-114008 | https://doi.org/10.7891/e-manuscripta-114008 | https://www.e-manuscripta.ch/swa/doi/10.7891/e-manuscripta-114008 + +Historical docs, single pages, but do have full PDF downloads. + +NOTE: re-ingest + +## www.inderscience.com + +Previously: paywall (2021-05_daily_improvements.md) + +## www.un-ilibrary.org + + link_source_id | base_url | terminal_url +----------------------------+--------------------------------------------+------------------------------------------------------------- + 10.18356/9789210550307 | https://doi.org/10.18356/9789210550307 | https://www.un-ilibrary.org/content/books/9789210550307 + 10.18356/9789210586719c011 | https://doi.org/10.18356/9789210586719c011 | https://www.un-ilibrary.org/content/books/9789210586719c011 + 10.18356/9789210058575c014 | https://doi.org/10.18356/9789210058575c014 | https://www.un-ilibrary.org/content/books/9789210058575c014 + 10.18356/9789210550307c020 | https://doi.org/10.18356/9789210550307c020 | https://www.un-ilibrary.org/content/books/9789210550307c020 + 10.18356/9789213631423c005 | https://doi.org/10.18356/9789213631423c005 | https://www.un-ilibrary.org/content/books/9789213631423c005 + +Books and chapters. Doesn't seem to have actual download ability? + +# Re-Ingest / Re-Crawl + +Using fatcat-ingest helper tool. + +- www.isca-speech.org doi_prefix:10.21437 + doi:* doi_prefix:10.21437 in_ia:false + 9,233 + ./fatcat_ingest.py --allow-non-oa query 'doi:* doi_prefix:10.21437' > /srv/fatcat/tasks/2021-09-03_ingest_isca.json + => Counter({'ingest_request': 9221, 'elasticsearch_release': 9221, 'estimate': 9221}) +- repository.dri.ie doi_prefix:10.7486 + doi:* in_ia:false doi_prefix:10.7486 + 56,532 + ./fatcat_ingest.py --allow-non-oa query 'doi:* doi_prefix:10.7486' > /srv/fatcat/tasks/2021-09-03_ingest_dri.json + => Counter({'ingest_request': 56532, 'elasticsearch_release': 56532, 'estimate': 56532}) +- *.arvojournals.org doi_prefix:10.1167 (force recrawl if no-pdf-link) + 25,598 + many are meeting abstracts + ./fatcat_ingest.py --allow-non-oa query doi_prefix:10.1167 > /srv/fatcat/tasks/2021-09-03_ingest_arvo.json + => Counter({'ingest_request': 25598, 'elasticsearch_release': 25598, 'estimate': 25598}) +- www.cureus.com doi_prefix:10.7759 + 1,537 + ./fatcat_ingest.py --allow-non-oa query doi_prefix:10.7759 > /srv/fatcat/tasks/2021-09-03_ingest_cureus.json + => Counter({'ingest_request': 1535, 'elasticsearch_release': 1535, 'estimate': 1535}) +- www.e-manuscripta.ch doi_prefix:10.7891 10.7891/e-manuscripta + 110,945 + TODO: all are marked 'unpublished', but that is actually probably right? +- www.frontiersin.org doi_prefix:10.3389 (both PDF and XML!) + doi:* in_ia:false doi_prefix:10.3389 + 212,370 + doi:10.3389/conf.* => most seem to be just abstracts? how many like this? + container_id:kecnf6vtpngn7j2avgfpdyw5ym => "topics" (2.2k) + fatcat-cli search release 'doi:* in_ia:false doi_prefix:10.3389 !container_id:kecnf6vtpngn7j2avgfpdyw5ym' --index-json -n0 | jq '[.ident, .container_id, .doi] | @tsv' -r | rg -v 10.3389/conf | pv -l | gzip > frontiers_to_crawl.tsv.gz + => 191k + but many might be components? this is actually kind of a mess + fatcat-cli search release 'doi:* in_ia:false doi_prefix:10.3389 !container_id:kecnf6vtpngn7j2avgfpdyw5ym !type:component stage:published' --index-json -n0 | jq '[.ident, .container_id, .doi] | @tsv' -r | rg -v 10.3389/conf | pv -l | gzip > frontiers_to_crawl.tsv.gz + => 19.2k + ./fatcat_ingest.py --allow-non-oa query 'doi:* in_ia:false doi_prefix:10.3389 !container_id:kecnf6vtpngn7j2avgfpdyw5ym !type:component stage:published' | rg -v 10.3389/conf > /srv/fatcat/tasks/2021-09-03_frontiers.json + +# Remaining Tasks / Domains (TODO) + +more complex crawling/content: +- add video link to alternative content demo ingest: https://open.library.ubc.ca/cIRcle/collections/48630/items/1.0400764 +- watermark.silverchair.com: if terminal-bad-status, then do recrawl via heritrix with base_url +- www.morressier.com: interesting site for rich web crawling/preservation (video+slides+data) +- doi.ala.org.au: possible dataset ingest source +- peerj.com, at least reviews, should be HTML ingest? or are some PDF? +- publons.com should be HTML ingest, possibly special case for scope +- frontiersin.org: any 'component' releases with PDF file are probably a metadata bug + +other tasks: +- handle this related withdrawn notice? https://open.library.ubc.ca/cIRcle/collections/48630/items/1.0401512 +- push/deploy sandcrawler changes -- cgit v1.2.3