From 5da6d85175992fae019e1d4d1ebeb4accfec1820 Mon Sep 17 00:00:00 2001
From: Ellen Spertus <ellen.spertus@gmail.com>
Date: Sun, 3 Jun 2018 16:31:59 -0700
Subject: Added HBaseBuilder.parseColSpecs and tests, which pass.

---
 .../src/main/scala/sandcrawler/HBaseBuilder.scala  | 49 ++++++++++++++++++++++
 .../test/scala/sandcrawler/HBaseBuilderTest.scala  | 43 +++++++++++++++++++
 2 files changed, 92 insertions(+)
 create mode 100644 scalding/src/main/scala/sandcrawler/HBaseBuilder.scala
 create mode 100644 scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala

diff --git a/scalding/src/main/scala/sandcrawler/HBaseBuilder.scala b/scalding/src/main/scala/sandcrawler/HBaseBuilder.scala
new file mode 100644
index 0000000..c55aef6
--- /dev/null
+++ b/scalding/src/main/scala/sandcrawler/HBaseBuilder.scala
@@ -0,0 +1,49 @@
+package sandcrawler
+
+import cascading.tuple.Fields
+import parallelai.spyglass.hbase.HBaseConstants.SourceMode
+import parallelai.spyglass.hbase.HBaseSource
+import scala._
+
+object HBaseBuilder {
+  // map from column families to column names
+  val schema = Map("f" -> List("c"),
+    "file" -> List("size", "mime", "cdx"),
+    "grobid0" -> List("status_code", "quality", "status", "tei_xml", "tei_json", "metadata"),
+    "match0" -> List("status", "doi", "info"))
+  // map from colFamily:colName -> colFamily
+  // Code from https://stackoverflow.com/a/50595189/6310511
+  val inverseSchema = for ((k, vs) <- schema; v <- vs) yield (k + ":" + v, k)
+
+  @throws(classOf[IllegalArgumentException])
+  def parseColSpec(colSpecs: List[String]) : (List[String], List[Fields]) = {
+    // Verify that all column specifiers are legal.
+    for (colSpec <- colSpecs) {
+      if (!(inverseSchema contains colSpec)) {
+        throw new IllegalArgumentException("No such column: " + colSpec)
+      }
+      val pair = colSpec split(":")
+      if (colSpec.split(":").length != 2) {
+        throw new IllegalArgumentException("Bad column specifier " + colSpec + 
+          " (specifiers should be family:name)")
+      }
+    }
+
+    // Produce and return a tuple containing:
+    // 1. A list of column families.
+    // 2. A corresponding list of Fields, each containing column names.
+    val groupMap: Map[String, List[String]] = colSpecs.groupBy(c => (c split ":")(0))
+    val families = groupMap.keys.toList
+    val groupedColNames : List[List[String]] = families map {fam => {
+        val cols = {groupMap(fam).map(v => v.split(":")(1))}
+        cols}}
+    (families, groupedColNames.map({fields => new Fields(fields : _*)}))
+  }
+
+  /*
+  def build(table: String, server: String, colSpec: List[String], sourceMode: SourceMode, keyList: List[String]) {
+    val (families: List[String], fields: List[Fields]) = parseColSpec(colSpec)
+    new HBaseSource(table, server, new Fields("key"), families, fields, sourceMode = sourceMode, keyList = keyList)
+  }
+   */
+}
diff --git a/scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala b/scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala
new file mode 100644
index 0000000..b45751d
--- /dev/null
+++ b/scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala
@@ -0,0 +1,43 @@
+package example
+
+import cascading.tuple.Fields
+import org.scalatest._
+import sandcrawler.HBaseBuilder
+
+class HBaseBuilderTest extends FlatSpec with Matchers {
+  "parseColSpec()" should "work on legal nontrivial input" in {
+    val (fams, fields) = HBaseBuilder.parseColSpec(List("file:size", "file:cdx", "match0:status"))
+    fams should have length 2
+    fields should have length 2
+    val fileIndex = fams.indexOf("file")
+    fileIndex should not be -1
+    fields(fileIndex) should be (new Fields("size", "cdx"))
+    val match0Index = fams.indexOf("match0")
+    match0Index should not be -1
+    fields(match0Index) should be (new Fields("status"))
+  }
+
+  it should "work on empty input" in {
+    val (fams, fields) = HBaseBuilder.parseColSpec(List())
+    fams should have length 0
+    fields should have length 0
+  }
+
+  it should "throw IllegalArgumentException on malformed input" in {
+    a [IllegalArgumentException] should be thrownBy {
+      HBaseBuilder.parseColSpec(List("file_size"))
+    }
+  }
+
+  it should "throw IllegalArgumentException on nonexistent family" in {
+    a [IllegalArgumentException] should be thrownBy {
+      HBaseBuilder.parseColSpec(List("foo:bar"))
+    }
+  }
+
+  it should "throw IllegalArgumentException on nonexistent column" in {
+    a [IllegalArgumentException] should be thrownBy {
+      HBaseBuilder.parseColSpec(List("file:bar"))
+    }
+  }
+}
-- 
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