From 5145dd3aa0c02c9fc496d1432fc4410674206e1d Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Mon, 20 Feb 2017 00:05:31 -0800 Subject: Import Upstream version 3a2 --- ncbi-dna.txi | 8 ++++++++ 1 file changed, 8 insertions(+) (limited to 'ncbi-dna.txi') diff --git a/ncbi-dna.txi b/ncbi-dna.txi index 9a5babc..160b9ee 100644 --- a/ncbi-dna.txi +++ b/ncbi-dna.txi @@ -5,17 +5,20 @@ Reads the NCBI-format DNA sequence following the word @samp{ORIGIN} from @var{port}. @end defun + @defun ncbi:read-file file Reads the NCBI-format DNA sequence following the word @samp{ORIGIN} from @var{file}. @end defun + @defun mrna<-cdna str Replaces @samp{T} with @samp{U} in @var{str} @end defun + @defun codons<-cdna cdna Returns a list of three-letter symbol codons comprising the protein @@ -23,12 +26,14 @@ sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + @defun protein<-cdna cdna Returns a list of three-letter symbols for the protein sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + @defun p<-cdna cdna Returns a string of one-letter amino acid codes for the protein @@ -36,6 +41,7 @@ sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + These cDNA count routines provide a means to check the nucleotide sequence with the @samp{BASE COUNT} line preceding the sequence from NCBI. @@ -47,8 +53,10 @@ Returns a list of counts of @samp{a}, @samp{c}, @samp{g}, and @samp{t} occurrencing in @var{cdna}. @end defun + @defun cdna:report-base-count cdna Prints the counts of @samp{a}, @samp{c}, @samp{g}, and @samp{t} occurrencing in @var{cdna}. @end defun + -- cgit v1.2.3