From 14cf4824f32727704c265bf9de1d209a5019f8f0 Mon Sep 17 00:00:00 2001 From: bnewbold Date: Wed, 9 Apr 2014 22:17:26 -0400 Subject: commit notes --- notes/lec01_intro | 17 +++++++++++++++++ notes/lec02_matlab1 | 24 ++++++++++++++++++++++++ notes/lec03_matlab2 | 14 ++++++++++++++ 3 files changed, 55 insertions(+) create mode 100644 notes/lec01_intro create mode 100644 notes/lec02_matlab1 create mode 100644 notes/lec03_matlab2 diff --git a/notes/lec01_intro b/notes/lec01_intro new file mode 100644 index 0000000..7785b73 --- /dev/null +++ b/notes/lec01_intro @@ -0,0 +1,17 @@ + +top down approach: + start with data, do stats, make predictions + see also Ma'ayan coursera course, "Network Analysis in Systems Bio" + +bottom up approach: + start with a model, run simulations to make predictions + scope: ODE, dynamics + beyond: parameter estimations, PDE, stochastics + +7 weeks, 25 lectures, 20 minutes each, 3-4 a week +questions at the end of lectures, "just for self" +5x homework assignments, required + +will discuss neuron firing a bit + +impression: will be very motivated diff --git a/notes/lec02_matlab1 b/notes/lec02_matlab1 new file mode 100644 index 0000000..53a8ac3 --- /dev/null +++ b/notes/lec02_matlab1 @@ -0,0 +1,24 @@ + +'format compact' => less syntax + +self assess: + C) 13x4 + E) vertcat; different columns + +### julia notes: + +built-in types seem to default to just an array instead of, eg, 3x1 or 1x3. + +can transform with "'"; A'' != A? + +to vert/horiz cat, need to explicitly + +julia> size([1,2,3]) +(3,) + +julia> size([1,2,3]') +(1,3) + +julia> size([1,2,3]'') +(3,1) + diff --git a/notes/lec03_matlab2 b/notes/lec03_matlab2 new file mode 100644 index 0000000..0d5b19a --- /dev/null +++ b/notes/lec03_matlab2 @@ -0,0 +1,14 @@ + +### julia notes + +for plotting, 'winston' is simple and matlab-like + 'gadfly' is nice/correct, using design paradigms + 'pyplot' is matplotlib + +for this class, at least to start, i'm going to try winston. + +Pkg.add("Winston") +using Winston +plot( cumsum(randn(1000)) ) + +in winston, fplot() is nice for plotting functions over ranges -- cgit v1.2.3